hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 113474447.fa
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Query sequence: gi|113474447|ref|YP_720508.1|
Accession: [none]
Description: FG-GAP [Trichodesmium erythraeum IMS101]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HemolysinCabind Hemolysin-type calcium-binding repeat 168.3 7.3e-50 9
FG-GAP FG-GAP repeat 111.6 1.2e-31 7
SpoIIE Stage II sporulation protein E (SpoII 3.2 1.1 1
STN Secretin and TonB N terminus short do 5.0 1.3 1
Mlo Mlo family 0.9 3.2 1
Pterin_bind Pterin binding enzyme 1.7 4.1 1
PTS_EIIB phosphotransferase system, EIIB 3.5 4.4 1
SBDS Shwachman-Bodian-Diamond syndrome (SB 2.8 4.6 1
DUF844 Baculovirus protein of unknown functi 0.4 6.3 1
CM2 Influenza C virus M2 protein 1.2 7 1
Cu_bind_like Plastocyanin-like domain 0.6 7.2 1
TFIIIC_subunit TFIIIC subunit 2.8 8.4 1
Candida_ALS Candida agglutinin-like protein (ALS) -1.6 9.6 1
SSV1_ORF_D-335 ORF D-335-like protein 0.8 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SSV1_ORF_D-335 1/1 168 203 .. 35 73 .] 0.8 9.9
FG-GAP 1/7 204 227 .. 8 36 .] 14.8 0.0025
FG-GAP 2/7 246 276 .. 1 36 [] 28.5 2.5e-07
SpoIIE 1/1 269 282 .. 1 14 [. 3.2 1.1
FG-GAP 3/7 295 326 .. 1 36 [] 18.5 0.0002
Candida_ALS 1/1 314 748 .. 614 646 .] -1.6 9.6
Mlo 1/1 314 336 .. 507 529 .] 0.9 3.2
FG-GAP 4/7 343 366 .. 1 36 [] 5.1 1.8
FG-GAP 5/7 396 426 .. 1 36 [] 9.0 0.13
DUF844 1/1 413 431 .. 360 378 .] 0.4 6.3
FG-GAP 6/7 445 475 .. 1 36 [] 26.7 8.1e-07
SBDS 1/1 469 483 .. 1 15 [. 2.8 4.6
FG-GAP 7/7 495 526 .. 1 36 [] 9.1 0.12
TFIIIC_subunit 1/1 499 508 .. 1 10 [. 2.8 8.4
STN 1/1 522 542 .. 1 22 [. 5.0 1.3
HemolysinCabind 1/9 531 548 .. 1 18 [] 7.5 0.41
PTS_EIIB 1/1 545 558 .. 1 15 [. 3.5 4.4
HemolysinCabind 2/9 558 575 .. 1 18 [] 19.9 7.4e-05
HemolysinCabind 3/9 576 593 .. 1 18 [] 23.8 4.9e-06
HemolysinCabind 4/9 594 611 .. 1 18 [] 20.9 3.7e-05
HemolysinCabind 5/9 612 629 .. 1 18 [] 19.5 9.5e-05
HemolysinCabind 6/9 630 647 .. 1 18 [] 17.2 0.00047
HemolysinCabind 7/9 648 665 .. 1 18 [] 18.5 0.0002
Pterin_bind 1/1 659 678 .. 211 230 .] 1.7 4.1
HemolysinCabind 8/9 666 683 .. 1 18 [] 20.0 6.8e-05
HemolysinCabind 9/9 684 701 .. 1 18 [] 21.1 3.2e-05
Cu_bind_like 1/1 719 735 .. 55 73 .. 0.6 7.2
CM2 1/1 747 755 .. 131 139 .] 1.2 7
Alignments of top-scoring domains:
SSV1_ORF_D-335: domain 1 of 1, from 168 to 203: score 0.8, E = 9.9
*->vGpLddVVetYlklKegrgGvwltp.nagrgGlePgtpgs<-*
+++L +VVe Y +++ + + p++ + gGleP +
gi|1134744 168 LALLPEVVESYPGVLA----TFGEPtTYPTGGLEPIYLKT 203
FG-GAP: domain 1 of 7, from 204 to 227: score 14.8, E = 0.0025
CS C-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->gDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
gDln+D +pD+v+ g++ +++v+++
gi|1134744 204 GDLNNDNIPDVVT-------GNgEsDNVSIF 227
FG-GAP: domain 2 of 7, from 246 to 276: score 28.5, E = 2.5e-07
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
++++v +gD+n DG++D+vv ++ d+++v+++
gi|1134744 246 GPTGVNIGDFNKDGFNDIVV-------SNfDeDTVSVF 276
SpoIIE: domain 1 of 1, from 269 to 282: score 3.2, E = 1.1
*->pdgrvalviGDVmG<-*
++++v ++++D+mG
gi|1134744 269 DEDTVSVFLADGMG 282
FG-GAP: domain 3 of 7, from 295 to 326: score 18.5, E = 0.0002
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d..gsvyll<-*
++ + ++D+n DG D+vv t+++++s+ l
gi|1134744 295 APTEIQVADFNKDGNQDIVV-------TTqSrgNSIITL 326
Candida_ALS: domain 1 of 1, from 314 to 748: score -1.6, E = 9.6
*->it.tertvsiiTc.g................................
+t+ r+ siiT g+++++ ++ +++ ++ + +++ ++++ +
gi|1134744 314 VTtQSRGNSIITLlGngngdfnqlttqatgawlsakgdfnqdsildl 360
..................................................
+ + +++ ++ + +++ ++ +++ + ++++++++ + ++ ++++
gi|1134744 361 atvqaigggltsyvsiylgngiggfstpaqyntggnsgdvevgnfnndrf 410
..................................................
+ ++++++++ + ++++++ +++ + ++ +++ + ++++ +
gi|1134744 411 idlvttneesdnisillgngngtfenpllldasdapdgvavadlnkdgfd 460
..................................................
+ ++++++ ++++ + ++ + ++++ + + + ++ +++++
gi|1134744 461 diavahnssnnvlvflgkgkakfaspidlptggadarilklsdldsdndl 510
..................................................
+ +++++++ + +++ +++++++ +++++ + ++ +++++ +++
gi|1134744 511 divvpnrdssnisvilntslignnknntlkgnnkanfingvggkdnlkgs 560
..................................................
+++++ +++++++ ++++++++ +++ ++++ ++++++++ +++++++
gi|1134744 561 ggndtilggggndrldgnsgndtltgeagndslnggsgndklnggggndi 610
..................................................
++++++++ +++++++ ++++++++ ++++++++ ++++++++ +++
gi|1134744 611 lnggsgrdrldgsggndilnggssndklnggggndklnggsgrdrlignn 660
..................................................
+++ ++++++++ +++++++ ++++++ ++++++++ ++++ +
gi|1134744 661 gkdiltggsgndtilggggddeliggsgndllnggsgddkfiyssrkafn 710
..................il.EenpttTtTstwseslft<-*
+++ ++++ + +++++i+ + +++t+ st es f+
gi|1134744 711 rktfgkdrianfapgsdkIIlDKTTFTSLDSTAGES-FS 748
Mlo: domain 1 of 1, from 314 to 336: score 0.9, E = 3.2
*->vgtlsrgsSpvsllhksnnrsdq<-*
v t srg S ++ll+++n+ +q
gi|1134744 314 VTTQSRGNSIITLLGNGNGDFNQ 336
FG-GAP: domain 4 of 7, from 343 to 366: score 5.1, E = 1.8
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCCTSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggtdgsvyll<-*
+++ +a gD+n D + Dl++ v++
gi|1134744 343 GAWLSAKGDFNQDSILDLAT------------VQAI 366
FG-GAP: domain 5 of 7, from 396 to 426: score 9.0, E = 0.13
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+ v +g +n+D + Dlv+ ++ ++++++l
gi|1134744 396 NSGDVEVGNFNNDRFIDLVT-------TNeEsDNISIL 426
DUF844: domain 1 of 1, from 413 to 431: score 0.4, E = 6.3
*->fvekvavgDsLniyLgsts<-*
+v +++ +D ++i Lg+ +
gi|1134744 413 LVTTNEESDNISILLGNGN 431
FG-GAP: domain 6 of 7, from 445 to 475: score 26.7, E = 8.1e-07
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+ +va++Dln DG++D++v +++++++v ++
gi|1134744 445 APDGVAVADLNKDGFDDIAV-------AHnSsNNVLVF 475
SBDS: domain 1 of 1, from 469 to 483: score 2.8, E = 4.6
CS --SEEEEEE-SSSEE
*->tnvavVrYKkggkrF<-*
+n ++V++ kg+ +F
gi|1134744 469 SNNVLVFLGKGKAKF 483
FG-GAP: domain 7 of 7, from 495 to 526: score 9.1, E = 0.12
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
++ + + Dl+ D D+vv P ++++++ ++l
gi|1134744 495 DARILKLSDLDSDNDLDIVV--P---NRDsSNISVIL 526
TFIIIC_subunit: domain 1 of 1, from 499 to 508: score 2.8, E = 8.4
*->lqisGLetdn<-*
l++s+L++dn
gi|1134744 499 LKLSDLDSDN 508
STN: domain 1 of 1, from 522 to 542: score 5.0, E = 1.3
CS -EEE--HHHHTT------E.EE
*->lnvvydpalvsgkrtvslrvgd<-*
++v+++ +l+ ++++++l+ g+
gi|1134744 522 ISVILNTSLIGNNKNNTLK-GN 542
HemolysinCabind: domain 1 of 9, from 531 to 548: score 7.5, E = 0.41
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G++ n+tL G++ ++ +
gi|1134744 531 IGNNKNNTLKGNNKANFI 548
PTS_EIIB: domain 1 of 1, from 545 to 558: score 3.5, E = 4.4
CS HHHHHHHHCTGCCEE
*->AkeilaAlGGkeNIv<-*
+ ++++GGk+N++
gi|1134744 545 -ANFINGVGGKDNLK 558
HemolysinCabind: domain 2 of 9, from 558 to 575: score 19.9, E = 7.4e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
G +GnDt+ Gg+GnD+l
gi|1134744 558 KGSGGNDTILGGGGNDRL 575
HemolysinCabind: domain 3 of 9, from 576 to 593: score 23.8, E = 4.9e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G+ GnDtL+G aGnD l
gi|1134744 576 DGNSGNDTLTGEAGNDSL 593
HemolysinCabind: domain 4 of 9, from 594 to 611: score 20.9, E = 3.7e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG GnD L+Gg+GnD+l
gi|1134744 594 NGGSGNDKLNGGGGNDIL 611
HemolysinCabind: domain 5 of 9, from 612 to 629: score 19.5, E = 9.5e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG G+D+L+G +GnD+l
gi|1134744 612 NGGSGRDRLDGSGGNDIL 629
HemolysinCabind: domain 6 of 9, from 630 to 647: score 17.2, E = 0.00047
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG nD L+Gg+GnD l
gi|1134744 630 NGGSSNDKLNGGGGNDKL 647
HemolysinCabind: domain 7 of 9, from 648 to 665: score 18.5, E = 0.0002
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG G+D+L G++G D+l
gi|1134744 648 NGGSGRDRLIGNNGKDIL 665
Pterin_bind: domain 1 of 1, from 659 to 678: score 1.7, E = 4.1
CS HHSS-EEEEECCGHHCCHHT
*->rlgyPlLvGgSRKsfiglll<-*
++g+ +L+GgS++ +i +
gi|1134744 659 NNGKDILTGGSGNDTILGGG 678
HemolysinCabind: domain 8 of 9, from 666 to 683: score 20.0, E = 6.8e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG GnDt+ Gg+G+D l
gi|1134744 666 TGGSGNDTILGGGGDDEL 683
HemolysinCabind: domain 9 of 9, from 684 to 701: score 21.1, E = 3.2e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG GnD L+Gg+G+D +
gi|1134744 684 IGGSGNDLLNGGSGDDKF 701
Cu_bind_like: domain 1 of 1, from 719 to 735: score 0.6, E = 7.2
CS SEEE-..SSEEEEEE-SSE
*->irtytrgtGndkipLtkpG<-*
i++++ G+dki L+k++
gi|1134744 719 IANFA--PGSDKIILDKTT 735
CM2: domain 1 of 1, from 747 to 755: score 1.2, E = 7
*->FsnDGvFEi<-*
FsnD FEi
gi|1134744 747 FSNDSEFEI 755
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