hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 113475152.fa
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Query sequence: gi|113475152|ref|YP_721213.1|
Accession: [none]
Description: hemolysin-type calcium-binding region [Trichodesmium erythraeum IMS101]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FG-GAP FG-GAP repeat 74.4 9.3e-21 8
HemolysinCabind Hemolysin-type calcium-binding repeat 54.0 3.3e-15 3
Podoplanin Podoplanin 7.3 0.037 1
Dockerin_1 Dockerin type I repeat 8.4 0.2 5
Bac_surface_Ag Surface antigen 3.8 0.71 1
RTX RTX N-terminal domain 0.6 1.1 1
OSCP ATP synthase delta (OSCP) subunit 2.7 2.8 1
Herp-Cyclin Herpesviridae viral cyclin 2.0 3.1 1
Mgr1 Mgr1-like, i-AAA protease complex sub -0.6 3.3 1
Sigma70_r3 Sigma-70 region 3 3.4 4.1 1
Deme6 Breast cancer protein 0.3 4.7 1
CS CS domain 2.4 5 1
YaeQ YaeQ protein 0.9 5.5 1
TraH_2 TraH_2 -0.4 6.1 1
PngaseF_N Peptide-N-glycosidase F, N terminal 0.1 7.5 1
eIF2_C Initiation factor eIF2 gamma, C termi 1.5 8.6 1
A2M Alpha-2-macroglobulin family 0.7 9.1 1
Chordopox_E11 Chordopoxvirus E11 protein 0.0 9.4 1
DUF1303 Protein of unknown function (DUF1303) -0.1 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Herp-Cyclin 1/1 58 76 .. 88 106 .] 2.0 3.1
DUF1303 1/1 95 104 .. 1 10 [. -0.1 9.9
Mgr1 1/1 178 186 .. 478 486 .] -0.6 3.3
FG-GAP 1/8 255 279 .. 1 36 [] 6.7 0.56
RTX 1/1 297 306 .. 658 667 .] 0.6 1.1
FG-GAP 2/8 311 328 .. 1 18 [. 10.1 0.058
Dockerin_1 1/5 319 324 .. 1 6 [. 0.9 38
CS 1/1 339 349 .. 72 83 .] 2.4 5
FG-GAP 3/8 370 383 .. 4 17 .. 9.3 0.1
A2M 1/1 387 402 .. 86 101 .] 0.7 9.1
FG-GAP 4/8 421 450 .. 1 36 [] 11.0 0.032
Chordopox_E11 1/1 438 450 .. 119 131 .] 0.0 9.4
Sigma70_r3 1/1 455 503 .. 35 83 .] 3.4 4.1
Dockerin_1 2/5 493 498 .. 1 6 [. 0.9 38
FG-GAP 5/8 493 516 .. 9 36 .] 4.7 2.2
TraH_2 1/1 515 524 .. 200 209 .] -0.4 6.1
FG-GAP 6/8 536 561 .. 1 36 [] 16.1 0.0011
Dockerin_1 3/5 545 551 .. 1 7 [. 2.6 12
OSCP 1/1 579 598 .. 129 148 .. 2.7 2.8
FG-GAP 7/8 591 615 .. 1 36 [] 6.7 0.6
Dockerin_1 4/5 599 605 .. 1 7 [. 0.2 63
YaeQ 1/1 638 654 .. 160 176 .] 0.9 5.5
Deme6 1/1 642 841 .. 177 260 .. 0.3 4.7
FG-GAP 8/8 664 697 .. 1 36 [] 9.9 0.07
Dockerin_1 5/5 672 680 .. 1 9 [. 3.7 5.4
eIF2_C 1/1 724 731 .. 85 92 .] 1.5 8.6
Bac_surface_Ag 1/1 730 752 .. 1 29 [. 3.8 0.71
HemolysinCabind 1/3 752 769 .. 1 18 [] 20.1 6.1e-05
Podoplanin 1/1 767 806 .. 29 68 .. 7.3 0.037
HemolysinCabind 2/3 770 787 .. 1 18 [] 15.7 0.0014
HemolysinCabind 3/3 788 805 .. 1 18 [] 18.2 0.00024
PngaseF_N 1/1 835 856 .. 1 25 [. 0.1 7.5
Alignments of top-scoring domains:
Herp-Cyclin: domain 1 of 1, from 58 to 76: score 2.0, E = 3.1
CS HHHHHHHHHHHHCG-GGG-
*->RtvKDqvaEAlalYdlEil<-*
R + q++EAl+ + E l
gi|1134751 58 RDAISQISEALSQTNAESL 76
DUF1303: domain 1 of 1, from 95 to 104: score -0.1, E = 9.9
*->KAsdnDDHnY<-*
KAs+ D+ nY
gi|1134751 95 KASNIDEYNY 104
Mgr1: domain 1 of 1, from 178 to 186: score -0.6, E = 3.3
*->LSIKFvPtv<-*
L IKF+P+
gi|1134751 178 LEIKFIPSQ 186
FG-GAP: domain 1 of 8, from 255 to 279: score 6.7, E = 0.56
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
+++ + +g l+G+G D v+ t++ +
gi|1134751 255 NPTDIQIGELDGNGNLDAVA-------VTsA-----Y 279
RTX: domain 1 of 1, from 297 to 306: score 0.6, E = 1.1
*->dtGaLTIDgt<-*
dtG+LT D +
gi|1134751 297 DTGKLTVDTQ 306
FG-GAP: domain 2 of 8, from 311 to 328: score 10.1, E = 0.058
CS CCSCEEEC-TTSSSSSEE
*->fgssvaagDlnGDGrpDl<-*
++ ++++D+n+DG++Dl
gi|1134751 311 NTDLISFADVNNDGLDDL 328
Dockerin_1: domain 1 of 5, from 319 to 324: score 0.9, E = 38
CS -TT-SS
*->DvNgDG<-*
DvN+DG
gi|1134751 319 DVNNDG 324
CS: domain 1 of 1, from 339 to 349: score 2.4, E = 5
CS ETTTEEEEEEEE
*->edtkkveItLkK<-*
+++ k+eI L+K
gi|1134751 339 TPS-KIEIRLRK 349
FG-GAP: domain 3 of 8, from 370 to 383: score 9.3, E = 0.1
CS CEEEC-TTSSSSSE
*->svaagDlnGDGrpD<-*
+va+gD+nGDG++D
gi|1134751 370 PVALGDFNGDGLMD 383
A2M: domain 1 of 1, from 387 to 402: score 0.7, E = 9.1
*->tVfNYldkcikVrVtL<-*
+VfNY + ++++ L
gi|1134751 387 SVFNYSSGKTTISIDL 402
FG-GAP: domain 4 of 8, from 421 to 450: score 11.0, E = 0.032
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
v++g +nGDG Dl++ + +gs ++
gi|1134751 421 DDGLVGVGEFNGDGNLDLAI-------LSySGSSGYY 450
Chordopox_E11: domain 1 of 1, from 438 to 450: score 0.0, E = 9.4
*->yaviassnNrrfY<-*
+a++++s ++ +Y
gi|1134751 438 LAILSYSGSSGYY 450
Sigma70_r3: domain 1 of 1, from 455 to 503: score 3.4, E = 4.1
*->LgiseekVrevleaarepvSLdlpvgeeeDselgdlleDdeaesped
Lg s +k+ +l +++ +Ld++v eeDs + +eD + ++ +d
gi|1134751 455 LGPSKQKISLLLGDGKGKFTLDTEVAFEEDSFPFLSIEDVNNDGLDD 501
av<-*
+
gi|1134751 502 IT 503
Dockerin_1: domain 2 of 5, from 493 to 498: score 0.9, E = 38
CS -TT-SS
*->DvNgDG<-*
DvN+DG
gi|1134751 493 DVNNDG 498
FG-GAP: domain 5 of 8, from 493 to 516: score 4.7, E = 2.2
CS -TTSSSSSEEEEEETCCCSCC T SEEEEE
*->DlnGDGrpDlvvgaPgadggt.d..gsvyll<-*
D+n+DG++D+ v +++ ++ + ++
gi|1134751 493 DVNNDGLDDITV-------SStEtsRESSIR 516
TraH_2: domain 1 of 1, from 515 to 524: score -0.4, E = 6.1
*->iRIDLSgIGa<-*
iRIDLS +
gi|1134751 515 IRIDLSKTNG 524
FG-GAP: domain 6 of 8, from 536 to 561: score 16.1, E = 0.0011
CS CCSCEEEC -TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaag.DlnGDGrpDlvvgaPgadggt.dgsvyll<-*
+ +++g+D+n DG+ Dlvv +t++ +
gi|1134751 536 NLIDLVGGgDINKDGKQDLVV-------RTgG-----M 561
Dockerin_1: domain 3 of 5, from 545 to 551: score 2.6, E = 12
CS -TT-SS-
*->DvNgDGk<-*
D+N+DGk
gi|1134751 545 DINKDGK 551
OSCP: domain 1 of 1, from 579 to 598: score 2.7, E = 2.8
CS XXXXXXXXXXXXXXXXXXXX
*->ktgqakkVkLetkVDpsLIG<-*
k++ +k+VkLe ++D +++G
gi|1134751 579 KFKEGKTVKLEEQIDDAIVG 598
FG-GAP: domain 7 of 8, from 591 to 615: score 6.7, E = 0.6
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
+ +gD+nGDG D+++ + ++ +
gi|1134751 591 QIDDAIVGDFNGDGNFDIAT-------FKnN-----F 615
Dockerin_1: domain 4 of 5, from 599 to 605: score 0.2, E = 63
CS -TT-SS-
*->DvNgDGk<-*
D NgDG+
gi|1134751 599 DFNGDGN 605
YaeQ: domain 1 of 1, from 638 to 654: score 0.9, E = 5.5
*->qvwlsdddgsvevtpev<-*
+v+l++++g+ +tp +
gi|1134751 638 SVFLGNGKGNFSTTPKT 654
Deme6: domain 1 of 1, from 642 to 841: score 0.3, E = 4.7
CS XXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXX
*->ssksesdslnssdistslakegqsn..ellasaestnsdnnsdksga
+++ + +s+++++ t++++ qsn+ +l ++ e +n+d++ ++ ++
gi|1134751 642 GNGKGNFSTTPKTLETKSESFLQSNnfALGDFNEDGNIDIAQAQFST 688
CS XXXXXXXXXXXXXXXXXXX
aedsrssaahisgepainr...............................
+++ s ++ +ge ++ + +++++++ ++++ + + ++++ ++++++
gi|1134751 689 ETTNQFSVLYNQGEKPPEAiksnknhtlkdeevdlrligkgningtgnel 738
CS
..................................................
+++ ++++++++ ++ +++++ +++++++ ++++++ +++++++
gi|1134751 739 dnnitgntkrnrlkgldgndtltggqgndmlmggndddiltggkgndmlm 788
CS XXX XXXXX XXXXXXXXX
...............................ees.slrnl.sDdsdlsqa
+++++++ ++++++++ + +++++ ++++ + + +++++++D+ +lsq
gi|1134751 789 ggndddtltggqgkdrfkfssnssfkpedfgLDTiTDFKSgQDAILLSQK 838
CS XXX
tid<-*
t d
gi|1134751 839 TFD 841
FG-GAP: domain 8 of 8, from 664 to 697: score 9.9, E = 0.07
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d....gsvyll<-*
+ a+gD+n DG D++ ++ +++++++ ++l
gi|1134751 664 QSNNFALGDFNEDGNIDIAQ-------AQfStettNQFSVL 697
Dockerin_1: domain 5 of 5, from 672 to 680: score 3.7, E = 5.4
CS -TT-SS--S
*->DvNgDGkVn<-*
D N+DG+++
gi|1134751 672 DFNEDGNID 680
eIF2_C: domain 1 of 1, from 724 to 731: score 1.5, E = 8.6
CS EEEEEEEE
*->RLIGwGtI<-*
RLIG G I
gi|1134751 724 RLIGKGNI 731
Bac_surface_Ag: domain 1 of 1, from 730 to 752: score 3.8, E = 0.71
*->NlfGrGeslsvslslisnlntAtkeqsfs<-*
N++G+G+ l ++ + + tk+++++
gi|1134751 730 NINGTGNELDNNIT-GN-----TKRNRLK 752
HemolysinCabind: domain 1 of 3, from 752 to 769: score 20.1, E = 6.1e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
G +GnDtL+Gg+GnD l
gi|1134751 752 KGLDGNDTLTGGQGNDML 769
Podoplanin: domain 1 of 1, from 767 to 806: score 7.3, E = 0.037
*->ddiiGavEDdvvTpGtedgvvtPGaEDkvvTtgateelyk<-*
d + G++ Dd+ T G + ++ + G D+ T g ++ k
gi|1134751 767 DMLMGGNDDDILTGGKGNDMLMGGNDDDTLTGGQGKDRFK 806
HemolysinCabind: domain 2 of 3, from 770 to 787: score 15.7, E = 0.0014
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
GG+ +D+L+Gg+GnD l
gi|1134751 770 MGGNDDDILTGGKGNDML 787
HemolysinCabind: domain 3 of 3, from 788 to 805: score 18.2, E = 0.00024
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
GG+ +DtL+Gg+G D++
gi|1134751 788 MGGNDDDTLTGGQGKDRF 805
PngaseF_N: domain 1 of 1, from 835 to 856: score 0.1, E = 7.5
CS --EEEEEEEESEEE--STT--SEEE
*->DntvniKtFDKvKnAFGDGLsqsAE<-*
KtFDK G G s AE
gi|1134751 835 ---LSQKTFDKLESTLGKGFSVIAE 856
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