hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 113476963.fa
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Query sequence: gi|113476963|ref|YP_723024.1|
Accession: [none]
Description: YD repeat-containing protein [Trichodesmium erythraeum IMS101]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RHS_repeat RHS Repeat 215.4 1.5e-61 13
PPC Bacterial pre-peptidase C-terminal do 197.6 3.4e-56 10
FG-GAP FG-GAP repeat 85.7 4.7e-24 6
Cadherin Cadherin domain 27.8 3e-07 2
TIG IPT/TIG domain 24.7 1.4e-05 1
DoxA TQO small subunit DoxA 15.9 0.00027 1
PolC_DP2 DNA polymerase II large subunit DP2 4.2 0.0031 1
DUF552 Protein of unknown function (DUF552) 13.3 0.0044 7
PBP_dimer Penicillin-binding Protein dimerisati 7.9 0.086 1
DUF1654 Protein of unknown function (DUF1654) 9.5 0.091 2
SoxZ Sulphur oxidation protein SoxZ 7.3 0.12 1
GSPII_G Bacterial type II secretion system pr 6.7 0.17 4
PKD PKD domain 4.0 1.1 1
MTHFR Methylenetetrahydrofolate reductase 2.7 1.3 1
FlgD Flagellar hook capping protein 3.4 1.4 4
Staphylcoagulse Staphylocoagulase repeat 5.4 1.4 1
Head_binding Head binding 2.8 1.4 1
He_PIG Putative Ig domain 4.9 1.4 2
Nucleotid_trans Nucleotide-diphospho-sugar transferas 2.2 1.4 1
Vac_Fusion Chordopoxvirus fusion protein 1.7 1.4 1
AKAP7_RIRII_bdg PKA-RI-RII subunit binding domain of 4.9 1.4 2
UPF0020 Putative RNA methylase family UPF0020 2.9 1.5 1
TFIID_90kDa WD40 associated region in TFIID subun 3.6 1.8 1
Phage_tail_3 Phage tail protein 3.5 1.8 1
CheY-binding CheY binding 4.9 1.9 1
Peptidase_C65 Peptidase C65 Otubain 2.5 1.9 1
Sec3 Exocyst complex component Sec3 0.8 2 1
Pneumo_NS1 Pneumovirus NS1 protein 2.7 2.2 1
QH-AmDH_gamma Quinohemoprotein amine dehydrogenase, 3.8 2.4 1
Gmad2 Immunoglobulin-like domain of bacteri 2.9 2.5 1
YfhO Bacterial membrane protein YfhO 0.6 2.6 1
NKWYS Putative capsular polysaccharide synt 2.9 2.6 1
DUF74 Domain of unknown function DUF74 2.8 2.6 1
DHBP_synthase 3,4-dihydroxy-2-butanone 4-phosphate 2.8 2.9 1
RE_Eco47II Eco47II restriction endonuclease 2.3 2.9 1
EIF_2_alpha Eukaryotic translation initiation fac 3.0 3.1 1
Big_1 Bacterial Ig-like domain (group 1) 1.9 3.4 1
TIP120 TATA-binding protein interacting (TIP 1.9 3.5 1
DUF1577 Protein of unknown function (DUF1577) 0.2 3.6 1
EspB Enterobacterial EspB protein -1.2 5 1
Attacin_C Attacin, C-terminal region 2.4 5.3 1
DUF823 Salmonella repeat of unknown function 0.3 5.7 1
Ribosomal_L14 Ribosomal protein L14p/L23e 2.0 6 1
Abhydro_lipase ab-hydrolase associated lipase region 2.3 6.7 1
ATP_bind_1 Conserved hypothetical ATP binding pr 0.6 6.8 1
Mak16 Mak16 protein 0.3 7 1
PSI_PsaF Photosystem I reaction centre subunit 0.4 7.4 1
OapA Opacity-associated protein A LysM-lik 1.3 7.5 1
Phage_B Scaffold protein B -0.7 7.5 1
Flagellar_rod Paraflagellar rod protein 0.5 7.6 1
Cna_B Cna protein B-type domain 1.2 7.9 1
MetJ Met Apo-repressor, MetJ 1.0 8.1 1
6PGD 6-phosphogluconate dehydrogenase, C-t -1.6 8.4 1
SecD_SecF Protein export membrane protein 0.5 8.5 1
DUF2453 Protein of unknown function (DUF2453) 1.0 8.5 1
zf-CDGSH Iron-binding zinc finger CDGSH type 1.2 8.6 1
SLAP Bacterial surface layer protein -1.5 8.7 1
Peptidase_A25 Germination protease -0.6 8.8 1
Baculo_gp41 Structural glycoprotein p40/gp41 cons 0.1 8.9 1
NDT80_PhoG NDT80 / PhoG like DNA-binding family -0.2 9 1
TipAS TipAS antibiotic-recognition domain 1.3 9.1 1
Y_Y_Y Y_Y_Y domain 1.6 9.3 1
CLAG Cytoadherence-linked asexual protein -3.0 9.3 1
PSCyt3 Protein of unknown function (DUF1588) 1.1 9.4 1
DUF1983 Domain of unknown function (DUF1983) 1.2 9.4 1
CreD Inner membrane protein CreD -0.8 9.4 1
DUF1664 Protein of unknown function (DUF1664) 0.2 9.7 1
Leader_CPA1 arg-2/CPA1 leader peptide 2.0 9.7 2
HCV_env Hepatitis C virus envelope glycoprote -0.1 9.8 1
DUF1443 Protein of unknown function (DUF1443) 2.2 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Peptidase_A25 1/1 7 38 .. 33 64 .. -0.6 8.8
TFIID_90kDa 1/1 19 34 .. 137 152 .] 3.6 1.8
DUF1577 1/1 22 38 .. 1 17 [. 0.2 3.6
PPC 1/10 175 241 .. 1 85 [] 20.2 4.1e-05
DUF552 1/7 182 199 .. 11 28 .. 1.7 12
HCV_env 1/1 238 250 .. 1 13 [. -0.1 9.8
PPC 2/10 294 360 .. 1 85 [] 22.4 1e-05
DUF552 2/7 301 318 .. 11 28 .. 2.3 8.4
CLAG 1/1 304 334 .. 1288 1318 .] -3.0 9.3
GSPII_G 1/4 382 398 .. 97 114 .] 1.4 7.1
PPC 3/10 413 479 .. 1 85 [] 22.4 1e-05
DUF552 3/7 420 437 .. 11 28 .. 2.3 8.4
AKAP7_RIRII_bdg 1/2 498 513 .. 46 61 .] 2.0 8.1
GSPII_G 2/4 501 517 .. 97 114 .] 0.2 16
PPC 4/10 532 598 .. 1 85 [] 20.8 2.7e-05
DUF552 4/7 539 556 .. 11 28 .. 2.3 8.4
GSPII_G 3/4 620 636 .. 97 114 .] 2.6 3.2
PPC 5/10 651 717 .. 1 85 [] 20.8 2.7e-05
DUF552 5/7 658 675 .. 11 28 .. 2.3 8.4
GSPII_G 4/4 739 755 .. 97 114 .] 2.6 3.2
PPC 6/10 770 836 .. 1 85 [] 20.4 3.8e-05
DUF552 6/7 778 794 .. 12 28 .. 1.3 16
AKAP7_RIRII_bdg 2/2 855 870 .. 46 61 .] 2.8 5.1
PPC 7/10 889 955 .. 1 85 [] 20.9 2.7e-05
DUF552 7/7 897 913 .. 12 28 .. 1.3 16
DUF2453 1/1 965 985 .. 75 95 .. 1.0 8.5
PPC 8/10 1008 1074 .. 1 85 [] 22.3 1e-05
zf-CDGSH 1/1 1081 1103 .. 1 26 [. 1.2 8.6
MTHFR 1/1 1087 1100 .. 304 317 .] 2.7 1.3
TIP120 1/1 1113 1128 .. 182 197 .] 1.9 3.5
Nucleotid_trans 1/1 1123 1160 .. 1 39 [. 2.2 1.4
PPC 9/10 1127 1192 .. 1 85 [] 27.2 4e-07
Peptidase_C65 1/1 1137 1154 .. 218 236 .. 2.5 1.9
Head_binding 1/1 1152 1198 .. 70 114 .] 2.8 1.4
FlgD 1/4 1154 1168 .. 136 155 .] 2.1 3.3
Gmad2 1/1 1156 1175 .. 42 63 .. 2.9 2.5
PolC_DP2 1/1 1182 1196 .. 890 904 .. 4.2 0.0031
SLAP 1/1 1188 1193 .. 429 434 .] -1.5 8.7
TIG 1/1 1214 1300 .. 1 103 [] 24.7 1.4e-05
PPC 10/10 1223 1287 .. 8 85 .] 0.2 24
Phage_tail_3 1/1 1237 1254 .. 1 19 [. 3.5 1.8
Mak16 1/1 1255 1262 .. 1 8 [. 0.3 7
Big_1 1/1 1268 1300 .. 74 106 .] 1.9 3.4
DoxA 1/1 1276 1298 .. 122 146 .] 15.9 0.00027
Y_Y_Y 1/1 1276 1285 .. 38 47 .. 1.6 9.3
PKD 1/1 1282 1300 .. 73 92 .] 4.0 1.1
DUF1443 1/1 1339 1346 .. 36 43 .] 2.2 10
Attacin_C 1/1 1394 1430 .. 1 42 [. 2.4 5.3
Pneumo_NS1 1/1 1463 1479 .. 120 136 .] 2.7 2.2
CreD 1/1 1543 1561 .. 470 488 .] -0.8 9.4
Ribosomal_L14 1/1 1556 1569 .. 80 93 .. 2.0 6
OapA 1/1 1557 1567 .. 76 86 .] 1.3 7.5
RHS_repeat 1/13 1587 1623 .. 1 44 [] 17.7 0.00035
FlgD 2/4 1606 1618 .. 138 155 .] 0.2 13
Abhydro_lipase 1/1 1618 1626 .. 63 71 .] 2.3 6.7
RHS_repeat 2/13 1628 1665 .. 1 44 [] 17.8 0.00035
RHS_repeat 3/13 1670 1707 .. 1 44 [] 12.3 0.013
DUF1654 1/2 1683 1701 .. 48 66 .. 6.8 0.49
RHS_repeat 4/13 1713 1749 .. 2 44 .] 12.7 0.0094
Phage_B 1/1 1731 1741 .. 1 11 [. -0.7 7.5
RHS_repeat 5/13 1760 1792 .. 7 44 .] 6.1 0.69
DUF823 1/1 1762 1771 .. 1 10 [. 0.3 5.7
RHS_repeat 6/13 1797 1832 .. 1 44 [] 18.6 0.0002
Staphylcoagulse 1/1 1813 1839 .. 1 27 [] 5.4 1.4
RHS_repeat 7/13 1839 1876 .. 1 44 [] 26.5 1.1e-06
FlgD 3/4 1867 1881 .. 136 155 .] 0.5 11
DHBP_synthase 1/1 1873 1885 .. 10 22 .. 2.8 2.9
RHS_repeat 8/13 1880 1917 .. 1 44 [] 22.0 2.2e-05
PSCyt3 1/1 1920 1934 .. 90 104 .] 1.1 9.4
RHS_repeat 9/13 1921 1959 .. 1 44 [] 20.6 5.4e-05
RHS_repeat 10/13 1964 2001 .. 1 44 [] 10.2 0.048
RHS_repeat 11/13 2010 2053 .. 1 44 [] 9.1 0.1
PBP_dimer 1/1 2064 2084 .. 175 195 .] 7.9 0.086
RHS_repeat 12/13 2073 2109 .. 1 44 [] 36.8 1.3e-09
Sec3 1/1 2109 2127 .. 778 796 .] 0.8 2
RHS_repeat 13/13 2110 2130 .. 18 44 .] 4.9 1.5
PSI_PsaF 1/1 2143 2156 .. 169 182 .] 0.4 7.4
SecD_SecF 1/1 2197 2219 .. 1 23 [. 0.5 8.5
NKWYS 1/1 2278 2298 .. 1 21 [. 2.9 2.6
DUF74 1/1 2283 2296 .. 59 72 .. 2.8 2.6
Flagellar_rod 1/1 2283 2299 .. 1 17 [. 0.5 7.6
UPF0020 1/1 2287 2315 .. 192 222 .] 2.9 1.5
TipAS 1/1 2352 2363 .. 133 144 .] 1.3 9.1
YfhO 1/1 2370 2380 .. 925 935 .] 0.6 2.6
ATP_bind_1 1/1 2402 2409 .. 1 8 [. 0.6 6.8
Baculo_gp41 1/1 2423 2431 .. 1 9 [. 0.1 8.9
MetJ 1/1 2510 2517 .. 97 104 .] 1.0 8.1
Vac_Fusion 1/1 2548 2552 .. 53 57 .] 1.7 1.4
EspB 1/1 2575 2602 .. 1 28 [. -1.2 5
SoxZ 1/1 2595 2619 .. 80 104 .] 7.3 0.12
FlgD 4/4 2658 2690 .. 1 30 [. 0.5 10
Cna_B 1/1 2673 2705 .. 38 77 .] 1.2 7.9
Cadherin 1/2 2687 2775 .. 1 107 [] 18.7 0.00012
QH-AmDH_gamma 1/1 2698 2709 .. 1 12 [. 3.8 2.4
DUF1983 1/1 2708 2740 .. 62 84 .] 1.2 9.4
DUF1664 1/1 2732 2737 .. 120 125 .] 0.2 9.7
He_PIG 1/2 2748 2763 .. 45 61 .] 1.2 15
EIF_2_alpha 1/1 2750 2761 .. 108 119 .] 3.0 3.1
Cadherin 2/2 2791 2875 .. 5 107 .] 9.1 0.069
RE_Eco47II 1/1 2811 2825 .. 200 213 .. 2.3 2.9
CheY-binding 1/1 2831 2841 .. 55 65 .] 4.9 1.9
He_PIG 2/2 2832 2863 .. 29 61 .] 3.6 3
DUF1654 2/2 2874 2903 .. 44 73 .] 2.7 5.9
FG-GAP 1/6 2878 2910 .. 1 36 [] 13.3 0.0068
Leader_CPA1 1/2 2890 2902 .. 12 24 .] 1.6 13
FG-GAP 2/6 2929 2962 .. 1 36 [] 13.2 0.0071
Leader_CPA1 2/2 2942 2954 .. 12 24 .] 0.4 29
NDT80_PhoG 1/1 2975 2982 .. 254 261 .] -0.2 9
6PGD 1/1 2976 2984 .. 287 297 .] -1.6 8.4
FG-GAP 3/6 2981 3014 .. 1 36 [] 13.9 0.0046
FG-GAP 4/6 3033 3066 .. 1 36 [] 18.3 0.00023
FG-GAP 5/6 3086 3118 .. 1 36 [] 17.7 0.00036
FG-GAP 6/6 3138 3167 .. 1 36 [] 9.2 0.11
Alignments of top-scoring domains:
Peptidase_A25: domain 1 of 1, from 7 to 38: score -0.6, E = 8.8
CS EEETTEEEEEEEE-HHHHTTTTS--CEEEEEE
*->GvKirtvevtkEGAEliGKKkGRYltLEavGi<-*
GvK+ + + ++G E i K G+Yl L +v i
gi|1134769 7 GVKVVILNSIEDGVEQITKVIGKYLHLSSVHI 38
TFIID_90kDa: domain 1 of 1, from 19 to 34: score 3.6, E = 1.8
*->ggsiIikIlnqHlhiD<-*
g+++I+k++ ++lh+
gi|1134769 19 GVEQITKVIGKYLHLS 34
DUF1577: domain 1 of 1, from 22 to 38: score 0.2, E = 3.6
*->kkkhiikkYLlaqellf<-*
++ ++i kYL+ ++ +
gi|1134769 22 QITKVIGKYLHLSSVHI 38
PPC: domain 1 of 10, from 175 to 241: score 20.2, E = 4.1e-05
CS -EEEEEEEESTTCEEEEEEECTSSS...S...CCEEEEEEECCCSES
*->dvdvysFtvpaggtlsisldggsslrslsgnGdadtlLywlldgdps
++d+y+F++ ++ ++ +l+g+ d ++++ ++d + +
gi|1134769 175 RYDYYQFNLLQNSIVNFNLSGL----------DEAAYID-IYDQN-N 209
CS SSSTTCE-.....ECCTTEEEEEECC.-SEEEEEEEEE
lsaydaystTrdvdnggsdelisftapeaGtYyirVyg<-*
s ++ y ++ + de ++f++ ++GtYy+r++
gi|1134769 210 ESLRSQYF-----SGQDTDEPLNFNL-NSGTYYARISN 241
DUF552: domain 1 of 7, from 182 to 199: score 1.7, E = 12
*->aLknrkaVivNLermdee<-*
+L+++ +V +NL+++de+
gi|1134769 182 NLLQNSIVNFNLSGLDEA 199
HCV_env: domain 1 of 1, from 238 to 250: score -0.1, E = 9.8
*->evrnisglYhvtn<-*
+ n+sg Y vtn
gi|1134769 238 RISNSSGWYSVTN 250
PPC: domain 2 of 10, from 294 to 360: score 22.4, E = 1e-05
CS -EEEEEEEESTTCEEEEEEECTSSS...S...CCEEEEEEECCCSES
*->dvdvysFtvpaggtlsisldggsslrslsgnGdadtlLywlldgdps
+d+y+F++ +++ ++ +l+g+ d ++++ ++d ++
gi|1134769 294 NYDYYQFNLQENSIVNFNLSGL----------DEAAYID-IYDQNNQ 329
CS SSSTTCE-.....ECCTTEEEEEECC.-SEEEEEEEEE
lsaydaystTrdvdnggsdelisftapeaGtYyirVyg<-*
+ ++ s +++++ +l f++ ++GtYy+r++
gi|1134769 330 SLKSQYFS-----GQDTDEPLN-FNL-NSGTYYARISN 360
DUF552: domain 2 of 7, from 301 to 318: score 2.3, E = 8.4
*->aLknrkaVivNLermdee<-*
+L+++ +V +NL+++de+
gi|1134769 301 NLQENSIVNFNLSGLDEA 318
CLAG: domain 1 of 1, from 304 to 334: score -3.0, E = 9.3
*->edakkNknytYvDdedyFDDlddNEQFLNek<-*
e++ N n D+ +y D d+N Q L ++
gi|1134769 304 ENSIVNFNLSGLDEAAYIDIYDQNNQSLKSQ 334
GSPII_G: domain 1 of 4, from 382 to 398: score 1.4, E = 7.1
CS TTS--...EEE--.TT-E
*->aDGqpGGeGtdaDpIgnW<-*
aDG e ++ D Ign
gi|1134769 382 ADGVGDTEEDAKD-IGNL 398
PPC: domain 3 of 10, from 413 to 479: score 22.4, E = 1e-05
CS -EEEEEEEESTTCEEEEEEECTSSS...S...CCEEEEEEECCCSES
*->dvdvysFtvpaggtlsisldggsslrslsgnGdadtlLywlldgdps
+d+y+F++ +++ ++ +l+g+ d ++++ ++d ++
gi|1134769 413 NYDYYQFNLQENSIVNFNLSGL----------DEAAYID-IYDQNNQ 448
CS SSSTTCE-.....ECCTTEEEEEECC.-SEEEEEEEEE
lsaydaystTrdvdnggsdelisftapeaGtYyirVyg<-*
+ ++ s +++++ +l f++ ++GtYy+r++
gi|1134769 449 SLKSQYFS-----GQDTDEPLN-FNL-NSGTYYARISN 479
DUF552: domain 3 of 7, from 420 to 437: score 2.3, E = 8.4
*->aLknrkaVivNLermdee<-*
+L+++ +V +NL+++de+
gi|1134769 420 NLQENSIVNFNLSGLDEA 437
AKAP7_RIRII_bdg: domain 1 of 2, from 498 to 513: score 2.0, E = 8.1
*->aEeaDrnGddsennRK<-*
+E aDr Gd +en +
gi|1134769 498 TEIADRAGDTEENAKD 513
GSPII_G: domain 2 of 4, from 501 to 517: score 0.2, E = 16
CS TTS--...EEE--.TT-E
*->aDGqpGGeGtdaDpIgnW<-*
aD + e ++ D Ign
gi|1134769 501 ADRAGDTEENAKD-IGNL 517
PPC: domain 4 of 10, from 532 to 598: score 20.8, E = 2.7e-05
CS -EEEEEEEESTTCEEEEEEECTSSS...S...CCEEEEEEECCCSES
*->dvdvysFtvpaggtlsisldggsslrslsgnGdadtlLywlldgdps
+d+y+F++ +++ ++ +l+g+ d ++++ ++d ++
gi|1134769 532 NYDYYQFNLQENSIVNFNLSGL----------DEAAYID-IYDQNNQ 567
CS SSSTTCE-.....ECCTTEEEEEECC.-SEEEEEEEEE
lsaydaystTrdvdnggsdelisftapeaGtYyirVyg<-*
+ ++ s + +++ +l f++ ++GtYy+r++
gi|1134769 568 SLKSQYFS-----GEDTDEPLN-FNL-NSGTYYARISN 598
DUF552: domain 4 of 7, from 539 to 556: score 2.3, E = 8.4
*->aLknrkaVivNLermdee<-*
+L+++ +V +NL+++de+
gi|1134769 539 NLQENSIVNFNLSGLDEA 556
GSPII_G: domain 3 of 4, from 620 to 636: score 2.6, E = 3.2
CS TTS--...EEE--.TT-E
*->aDGqpGGeGtdaDpIgnW<-*
aDG e ++ D Ign
gi|1134769 620 ADGVGDTEENAKD-IGNL 636
PPC: domain 5 of 10, from 651 to 717: score 20.8, E = 2.7e-05
CS -EEEEEEEESTTCEEEEEEECTSSS...S...CCEEEEEEECCCSES
*->dvdvysFtvpaggtlsisldggsslrslsgnGdadtlLywlldgdps
+d+y+F++ +++ ++ +l+g+ d ++++ ++d ++
gi|1134769 651 NYDYYQFNLQENSIVNFNLSGL----------DEAAYID-IYDQNNQ 686
CS SSSTTCE-.....ECCTTEEEEEECC.-SEEEEEEEEE
lsaydaystTrdvdnggsdelisftapeaGtYyirVyg<-*
+ ++ s + +++ +l f++ ++GtYy+r++
gi|1134769 687 SLKSQYFS-----GEDTDEPLN-FNL-NSGTYYARISN 717
DUF552: domain 5 of 7, from 658 to 675: score 2.3, E = 8.4
*->aLknrkaVivNLermdee<-*
+L+++ +V +NL+++de+
gi|1134769 658 NLQENSIVNFNLSGLDEA 675
GSPII_G: domain 4 of 4, from 739 to 755: score 2.6, E = 3.2
CS TTS--...EEE--.TT-E
*->aDGqpGGeGtdaDpIgnW<-*
aDG e ++ D Ign
gi|1134769 739 ADGVGDTEENAKD-IGNL 755
PPC: domain 6 of 10, from 770 to 836: score 20.4, E = 3.8e-05
CS -EEEEEEEESTTCEEEEEEECTSSS...S...CCEEEEEEECCCSES
*->dvdvysFtvpaggtlsisldggsslrslsgnGdadtlLywlldgdps
+d+y+F + +++ ++ +l+g+ d ++++ ++d ++
gi|1134769 770 NYDYYQFKLQENSIVNFNLSGL----------DEAAYID-IYDQNNQ 805
CS SSSTTCE-.....ECCTTEEEEEECC.-SEEEEEEEEE
lsaydaystTrdvdnggsdelisftapeaGtYyirVyg<-*
+ ++ s + +++ +l f++ ++GtYy+r++
gi|1134769 806 SLKSQYFS-----GEDTDEPLN-FNL-NSGTYYARISN 836
DUF552: domain 6 of 7, from 778 to 794: score 1.3, E = 16
*->LknrkaVivNLermdee<-*
L+++ +V +NL+++de+
gi|1134769 778 LQENSIVNFNLSGLDEA 794
AKAP7_RIRII_bdg: domain 2 of 2, from 855 to 870: score 2.8, E = 5.1
*->aEeaDrnGddsennRK<-*
+E aDr Gd +e +K
gi|1134769 855 TEIADRAGDTEEDAKK 870
PPC: domain 7 of 10, from 889 to 955: score 20.9, E = 2.7e-05
CS -EEEEEEEESTTCEEEEEEECTSSS...S...CCEEEEEEECCCSES
*->dvdvysFtvpaggtlsisldggsslrslsgnGdadtlLywlldgdps
+d+y+F++ +++ ++ +l+g+ d +++ ++d ++
gi|1134769 889 NYDYYQFSLQENSIVNFNLSGL----------DEAAYIH-IYDQNNQ 924
CS SSSTTCE-.....ECCTTEEEEEECC.-SEEEEEEEEE
lsaydaystTrdvdnggsdelisftapeaGtYyirVyg<-*
+ ++ s + +++ +l f++ ++GtYy+r++
gi|1134769 925 SLKSEYFS-----GEDTDEPLN-FNL-NSGTYYARISN 955
DUF552: domain 7 of 7, from 897 to 913: score 1.3, E = 16
*->LknrkaVivNLermdee<-*
L+++ +V +NL+++de+
gi|1134769 897 LQENSIVNFNLSGLDEA 913
DUF2453: domain 1 of 1, from 965 to 985: score 1.0, E = 8.5
*->TkaQlkskstrrAthaGstlG<-*
T++ l++ +++ A ++G+t+G
gi|1134769 965 TPYELEMSAVSIADNSGNTIG 985
PPC: domain 8 of 10, from 1008 to 1074: score 22.3, E = 1e-05
CS -EEEEEEEESTTCEEEEEEECTSSS...S...CCEEEEEEECCCSES
*->dvdvysFtvpaggtlsisldggsslrslsgnGdadtlLywlldgdps
++d+y+F++++ ++++ l+g++ da ++ l++ + +
gi|1134769 1008 RYDYYQFELKEDSRINFHLSGLD---------DAA-YIH-LYNQN-N 1042
CS SSSTTCE-.....ECCTTEEEEEECC.-SEEEEEEEEE
lsaydaystTrdvdnggsdelisftapeaGtYyirVyg<-*
s ++ y ++ + de +f++ ++GtYy+r++
gi|1134769 1043 ESLRSEYF-----SGQDTDEPMNFNL-DSGTYYARISN 1074
zf-CDGSH: domain 1 of 1, from 1081 to 1103: score 1.2, E = 8.6
*->tgngPykveGvelegdveiveda.Ge.y<-*
n+Py +e +veiv d+ G+++
gi|1134769 1081 QTNTPYNLE----MSAVEIV-DKaGNsF 1103
MTHFR: domain 1 of 1, from 1087 to 1100: score 2.7, E = 1.3
*->NrEkatleIlenLG<-*
N+E+++ eI++ +G
gi|1134769 1087 NLEMSAVEIVDKAG 1100
TIP120: domain 1 of 1, from 1113 to 1128: score 1.9, E = 3.5
*->dknpvwsefvsqikkn<-*
+ n+++++f+s+i ++
gi|1134769 1113 VGNHSFNDFLSDIDTF 1128
Nucleotid_trans: domain 1 of 1, from 1123 to 1160: score 2.2, E = 1.4
*->nsvsfhferinenteF....rneFanslkkmpkapyviLlNss<-*
+++ + ++++F+ ++ +F +++++ ++ +viL++++
gi|1134769 1123 SDID-----TFDYYRFelnkDSSFELEIENLDRNAGVILYDNH 1160
PPC: domain 9 of 10, from 1127 to 1192: score 27.2, E = 4e-07
CS -EEEEEEEESTTCEEEEEEECTSSS...S...CCEEEEEEECCCSES
*->dvdvysFtvpaggtlsisldggsslrslsgnGdadtlLywlldgdps
+ d+y+F++++ ++ ++ +++++ +a ++Ly ++++ +
gi|1134769 1127 TFDYYRFELNKDSSFELEIENLDR--------NAGVILY--DNHGQV 1163
CS SSSTTCE-.....ECCTTEEEEEECC .-SEEEEEEEEE
lsaydaystTrdvdnggsdelisfta.peaGtYyirVyg<-*
+ + +a+s +ng s f+ ++eaG+Y++rV
gi|1134769 1164 IKSVTATS-----WNGAS-----FNQgLEAGDYFVRVAN 1192
Peptidase_C65: domain 1 of 1, from 1137 to 1154: score 2.5, E = 1.9
*->kpagvairVeYLDRsevGs<-*
k++ + +++e+LDR++ G+
gi|1134769 1137 KDSSFELEIENLDRNA-GV 1154
Head_binding: domain 1 of 1, from 1152 to 1198: score 2.8, E = 1.4
*->aGypvYn..GqiaKfvtvegHsmAvYDadGaqqfYfanvLKYdPdkf
aG + Y ++Gq++K vt + A + +Yf v ++ d f
gi|1134769 1152 AGVILYDnhGQVIKSVTATSWNGASFNQGLEAGDYFVRVANFGDDNF 1198
<-*
gi|1134769 - -
FlgD: domain 1 of 4, from 1154 to 1168: score 2.1, E = 3.3
*->vtikDaaGqvvnvelVrtid<-*
v+++D+ Gqv +++++
gi|1134769 1154 VILYDNHGQV-----IKSVT 1168
Gmad2: domain 1 of 1, from 1156 to 1175: score 2.9, E = 2.5
*->iqdgdGevlaeghatAsgGaps<-*
++d++G+v+ +++tA+ ++++
gi|1134769 1156 LYDNHGQVI--KSVTATSWNGA 1175
PolC_DP2: domain 1 of 1, from 1182 to 1196: score 4.2, E = 0.0031
*->saAeYLlkVAnFvDD<-*
+a++Y+++VAnF DD
gi|1134769 1182 EAGDYFVRVANFGDD 1196
SLAP: domain 1 of 1, from 1188 to 1193: score -1.5, E = 8.7
*->VKasNF<-*
V+++NF
gi|1134769 1188 VRVANF 1193
TIG: domain 1 of 1, from 1214 to 1300: score 24.7, E = 1.4e-05
CS SEEEEEES ESEETTTEEEEEEEESSBSSGG.........TTEEEEE
*->PvItsisP.sgplsGGteiTitGsnlgsgsePrirkntfdedisVtf
++I++i P++g+ sG t+i ++Gs + +s +V+
gi|1134769 1214 LKISDITPeTGSNSGETTISLQGSSFSLAS-------------QVSL 1247
CS TTEEE GGGEEEEESE SEEEEEE-SCS EEESSCCEEEEEEEETT C
ggtpv..pcdvisssss..tqivCktPpya.ggpsppvtvtvsvdggg.s
g+ ++++d i+++++++ q ++ ++ +++g ++v+v+ g++
gi|1134769 1248 VGNGSstNADEIVWQNErnLQATFDLGGLPpGK------YQVKVTDEGeT 1291
CS TTCEEEEEEEEEE
gdgrssspvtFtY<-*
++ +tF++
gi|1134769 1292 ----ATAQETFSV 1300
PPC: domain 10 of 10, from 1223 to 1287: score 0.2, E = 24
CS EESTTCEEEEEEECTSSS...S...CCEEEEEEECCCS ESSSSTTC
*->tvpaggtlsisldggsslrslsgnGdadtlLywlldgd.pslsayda
t +++g+ +isl g+s ++ + l++ ++++ ++ +
gi|1134769 1223 TGSNSGETTISLQGSSF--------SLASQVS-LVGNGsSTNADEIV 1260
CS E-.....ECCTTEEEEEECC.-SEEEEEEEEE
ystTrdvdnggsdelisftapeaGtYyirVyg<-*
++ + + + +++ + +G+Y ++V
gi|1134769 1261 WQ-----NERNLQATFDLGGLPPGKYQVKVTD 1287
Phage_tail_3: domain 1 of 1, from 1237 to 1254: score 3.5, E = 1.8
*->SGWakLndrvvrVgagtat<-*
S+++ L++ v++Vg+g++t
gi|1134769 1237 SSFS-LASQVSLVGNGSST 1254
Mak16: domain 1 of 1, from 1255 to 1262: score 0.3, E = 7
*->qsDdViWq<-*
+ D+++Wq
gi|1134769 1255 NADEIVWQ 1262
Big_1: domain 1 of 1, from 1268 to 1300: score 1.9, E = 3.4
CS EEEEEEE-SS-EEEEEEEEET.TECEEEEEEEE
*->kAtvtLTstkaGtytVtAslanngatsvdaktV<-*
+At++L + +G+y+V+++ +++ at++ + V
gi|1134769 1268 QATFDLGGLPPGKYQVKVTDEGETATAQETFSV 1300
DoxA: domain 1 of 1, from 1276 to 1298: score 15.9, E = 0.00027
*->LppGtYevklydPasGssaaakqkf<-*
LppG+Y vk++d G +a a +f
gi|1134769 1276 LPPGKYQVKVTD--EGETATAQETF 1298
Y_Y_Y: domain 1 of 1, from 1276 to 1285: score 1.6, E = 9.3
*->LppGkYtikv<-*
LppGkY++kv
gi|1134769 1276 LPPGKYQVKV 1285
PKD: domain 1 of 1, from 1282 to 1300: score 4.0, E = 1.1
CS EEEEEETTCEEEEEEEEEEE
*->tLtvsngvgsasattttvtV<-*
+++v+++ +a+a+ t+ V
gi|1134769 1282 QVKVTDEGETATAQ-ETFSV 1300
DUF1443: domain 1 of 1, from 1339 to 1346: score 2.2, E = 10
*->PepLlsyV<-*
P pLl++V
gi|1134769 1339 PAPLLNLV 1346
Attacin_C: domain 1 of 1, from 1394 to 1430: score 2.4, E = 5.3
*->ipgfgdtLtaagkanLFhndnhdLdAkAfasrnrpdiPnvPn<-*
+ g+g++ ++++a ++ + +d ++f+ r rpd nvP+
gi|1134769 1394 TVGVGEQINFTVNAV---TPDEEVDWNSFKERLRPD--NVPD 1430
Pneumo_NS1: domain 1 of 1, from 1463 to 1479: score 2.7, E = 2.2
*->selakYsnqLseLLGld<-*
s+l +Y n LLG++
gi|1134769 1463 SKLGEYTNDAGRLLGFE 1479
CreD: domain 1 of 1, from 1543 to 1561: score -0.8, E = 9.4
*->avMfLTRklDWYqvgekqr<-*
++M+LT+ D+Yq+ ++
gi|1134769 1543 ITMVLTKVEDVYQLRQSDG 1561
Ribosomal_L14: domain 1 of 1, from 1556 to 1569: score 2.0, E = 6
CS EE-TTSEEEEESS-
*->lkRkDGsfirFddN<-*
l+ DG++irF++N
gi|1134769 1556 LRQSDGTIIRFRSN 1569
OapA: domain 1 of 1, from 1557 to 1567: score 1.3, E = 7.5
*->RqSDGsFgRsK<-*
RqSDG+ +R +
gi|1134769 1557 RQSDGTIIRFR 1567
RHS_repeat: domain 1 of 13, from 1587 to 1623: score 17.7, E = 0.00035
*->YDanGrLtavtdpsgpvgqtYrYDaagrltaltlttstdasGtt<-*
Y nG+Lt+ +++g ++ ++ Y++ gr++++ td sG +
gi|1134769 1587 YT-NGHLTSWENSNGEKT-DFVYNSQGRIIRT-----TDSSGWV 1623
FlgD: domain 2 of 4, from 1606 to 1618: score 0.2, E = 13
*->ikDaaGqvvnvelVrtid<-*
+++++G + +rt d
gi|1134769 1606 VYNSQGRI-----IRTTD 1618
Abhydro_lipase: domain 1 of 1, from 1618 to 1626: score 2.3, E = 6.7
*->sSsnWVvNl<-*
+Ss+WV+N
gi|1134769 1618 DSSGWVTNY 1626
RHS_repeat: domain 2 of 13, from 1628 to 1665: score 17.8, E = 0.00035
*->YDanG.rLtavtdpsgpvgqtYrYDaagrltaltlttstdasGtt<-
YD +G++L++vt+p+g+v Y+Y++ +t++ td +Gt+
gi|1134769 1628 YDGTGeKLLSVTTPDGTVS--YTYNDSFAITSV-----TDIDGTK 1665
*
gi|1134769 - -
RHS_repeat: domain 3 of 13, from 1670 to 1707: score 12.3, E = 0.013
*->YDanGrLtavt.dpsgpvgq.tYrYDaagrltaltlttstdasGtt<
YD +GrL++ + ++ +++ tYr D+ + + +da+G+t
gi|1134769 1670 YDGQGRLIEESwGDGSEKVEyTYRDDGSVQ---V-----RDANGAT 1707
-*
gi|1134769 - -
DUF1654: domain 1 of 2, from 1683 to 1701: score 6.8, E = 0.49
*->aEtdgieLafedDgsVrir<-*
++ + +e +++dDgsV++r
gi|1134769 1683 DGSEKVEYTYRDDGSVQVR 1701
RHS_repeat: domain 4 of 13, from 1713 to 1749: score 12.7, E = 0.0094
*->DanGrLtavtdpsgpvgqtYrYDaagrltaltlttstdasGtt<-*
+++G++ ++td+ g+++ rYD g+l ++ ++G +
gi|1134769 1713 NDRGQVGQMTDALGRQT-QMRYDQNGNLSQV-----VAPDGSV 1749
Phage_B: domain 1 of 1, from 1731 to 1741: score -0.7, E = 7.5
*->ltenqngnlSq<-*
+ qngnlSq
gi|1134769 1731 MRYDQNGNLSQ 1741
RHS_repeat: domain 5 of 13, from 1760 to 1792: score 6.1, E = 0.69
*->LtavtdpsgpvgqtYrYD.aagrltaltlttstdasGtt<-*
L+a+t ++g+++ ++Y +++++l + tda+
gi|1134769 1760 LLAQTGADGNTT-NFEYEpNFNQLSVV-----TDAKDNQ 1792
DUF823: domain 1 of 1, from 1762 to 1771: score 0.3, E = 5.7
*->GvTgAdGtat<-*
++TgAdG++t
gi|1134769 1762 AQTGADGNTT 1771
RHS_repeat: domain 6 of 13, from 1797 to 1832: score 18.6, E = 0.0002
*->YDanGrLtavtdpsgpvgqtYrYDaagrltaltlttstdasGtt<-*
YD++G+ t + +++g++ ++ YD++g+l+ + t+++ +
gi|1134769 1797 YDDRGNATDIIYADGSRD-RFKYDSEGNLILT-----TNRR--E 1832
Staphylcoagulse: domain 1 of 1, from 1813 to 1839: score 5.4, E = 1.4
*->rptynkpsetnAYnvtthadGtvsYGa<-*
r +++ se n t ++G+v Y
gi|1134769 1813 RDRFKYDSEGNLILTTNRREGQVGYSY 1839
RHS_repeat: domain 7 of 13, from 1839 to 1876: score 26.5, E = 1.1e-06
*->YDanGrLtavt.dpsgpvgqtYrYDaagrltaltlttstdasGtt<-
YD+ +rL+ + ++++ Y+YD++g+l+ + td sG+t
gi|1134769 1839 YDDVDRLIHKQfGNGDSLN--YEYDDRGNLIKV-----TDESGET 1876
*
gi|1134769 - -
FlgD: domain 3 of 4, from 1867 to 1881: score 0.5, E = 11
*->vtikDaaGqvvnvelVrtid<-*
++++D++G++ V d
gi|1134769 1867 IKVTDESGET-----VMVYD 1881
DHBP_synthase: domain 1 of 1, from 1873 to 1885: score 2.8, E = 2.9
CS TT--EEEE--TTT
*->qGkiVlVmDDEDR<-*
+G+ V+V+DD DR
gi|1134769 1873 SGETVMVYDDADR 1885
RHS_repeat: domain 8 of 13, from 1880 to 1917: score 22.0, E = 2.2e-05
*->YDanGrLtavtdpsgpvgqtYrYDaagrltaltlttstdasGtt<-*
YD+++rLt +t+p+ + + +++Y + +r + +d +G +
gi|1134769 1880 YDDADRLTKITYPTERWL-EFTYENNRRSSMV-----DDSGGIV 1917
PSCyt3: domain 1 of 1, from 1920 to 1934: score 1.1, E = 9.4
*->nFDaiGrWRdqedgg<-*
++D++Gr R+ dg+
gi|1134769 1920 GYDGVGRLRKLTDGE 1934
RHS_repeat: domain 9 of 13, from 1921 to 1959: score 20.6, E = 5.4e-05
*->YDanGrLtavtdpsgpvgqt.YrYDaagrltaltlttstdasGtt<-
YD GrL td + +Y+YD+ grl +++Gt+
gi|1134769 1921 YDGVGRLRKLTDGENELI-VqYSYDNIGRLAKE-----ENGNGTA 1959
*
gi|1134769 - -
RHS_repeat: domain 10 of 13, from 1964 to 2001: score 10.2, E = 0.048
*->YDanGrLtavt..dpsgpvgq.t.YrYDaagrltaltlttstdasGt
YD+ G+L+ t+ d++++v + +Y+YD++gr + +a+
gi|1134769 1964 YDDVGQLVKLTnfDADNQVNSqFeYSYDDLGR---R-----STAK-- 2000
t<-*
t
gi|1134769 2001 T 2001
RHS_repeat: domain 11 of 13, from 2010 to 2053: score 9.1, E = 0.1
*->YDanGrLtavt.d......psgpvgqtYrYDaagrltaltlttstda
YDa G+L++ + d+++++ p+ + Y+YDa g+++++
gi|1134769 2010 YDAVGQLISAKfDssnseiPDQNLS--YTYDAVGNRIST-----KVN 2049
sGtt<-*
+ t
gi|1134769 2050 GQNT 2053
PBP_dimer: domain 1 of 1, from 2064 to 2084: score 7.9, E = 0.086
*->GkdGkrkyevDarGrviptls<-*
G++G ++ye Da+G+ i+ ++
gi|1134769 2064 GQVGDIEYEYDADGNLIEKTE 2084
RHS_repeat: domain 12 of 13, from 2073 to 2109: score 36.8, E = 1.3e-09
*->YDanGrLtavtdpsgpvgqtYrYDaagrltaltlttstdasGtt<-*
YDa+G+L+++t +g+v+ Y+Y+ ++rl+ + +++G +
gi|1134769 2073 YDADGNLIEKT-EGGNVW-QYEYNVENRLVKV-----VEPDGIE 2109
Sec3: domain 1 of 1, from 2109 to 2127: score 0.8, E = 2
*->efIkqynrleriiqkcYpG<-*
e++ +y+ l+++i+++Y G
gi|1134769 2109 ETEYEYDVLGNRIATVYDG 2127
RHS_repeat: domain 13 of 13, from 2110 to 2130: score 4.9, E = 1.5
*->gqtYrYDaagrltaltlttstdasGtt<-*
+ +Y+YD +g+++a+ + + +t
gi|1134769 2110 T-EYEYDVLGNRIAT-----VYDGNRT 2130
PSI_PsaF: domain 1 of 1, from 2143 to 2156: score 0.4, E = 7.4
CS HHHHHTT-SS--GG
*->lqEfsSGeLvakDe<-*
++Ef+ G+Lva+
gi|1134769 2143 VGEFQDGDLVARYV 2156
SecD_SecF: domain 1 of 1, from 2197 to 2219: score 0.5, E = 8.5
*->kveallketgpldkeiisvefVG<-*
+++++ k+++ + +++++efVG
gi|1134769 2197 HYAPFGKDVFEQEQVANQFEFVG 2219
NKWYS: domain 1 of 1, from 2278 to 2298: score 2.9, E = 2.6
*->ieiklnDssardmErtqllqe<-*
++ +nDs++r +Er +l e
gi|1134769 2278 KSKDKNDSIKRMIERAKKLRE 2298
DUF74: domain 1 of 1, from 2283 to 2296: score 2.8, E = 2.6
*->eiAleRMveeAkaL<-*
++ ++RM+e+Ak+L
gi|1134769 2283 NDSIKRMIERAKKL 2296
Flagellar_rod: domain 1 of 1, from 2283 to 2299: score 0.5, E = 7.6
*->tkeisavidakhrqkea<-*
+++i+++i++ + ++e+
gi|1134769 2283 NDSIKRMIERAKKLRER 2299
UPF0020: domain 1 of 1, from 2287 to 2315: score 2.9, E = 1.5
*->kkdlekaieerGlelrkkkernvhlgllryi<-*
k+++e+a +r e +kk++ n+++++l+++
gi|1134769 2287 KRMIERAKKLR--EREKKYLGNGGKSGLLTR 2315
TipAS: domain 1 of 1, from 2352 to 2363: score 1.3, E = 9.1
CS HHHHHHHHHHHH
*->AeflseAIeyYa<-*
Aefls+A ++a
gi|1134769 2352 AEFLSDATGIFA 2363
YfhO: domain 1 of 1, from 2370 to 2380: score 0.6, E = 2.6
*->PPglklGlliS<-*
+Pg ++Gl+i+
gi|1134769 2370 TPGYIIGLCIT 2380
ATP_bind_1: domain 1 of 1, from 2402 to 2409: score 0.6, E = 6.8
*->VvGpaGSG<-*
++GpaG+G
gi|1134769 2402 IIGPAGVG 2409
Baculo_gp41: domain 1 of 1, from 2423 to 2431: score 0.1, E = 8.9
*->tKRFdsDee<-*
t+RF++D e
gi|1134769 2423 TIRFENDAE 2431
MetJ: domain 1 of 1, from 2510 to 2517: score 1.0, E = 8.1
*->vdPEsWEY<-*
+dPE+ EY
gi|1134769 2510 IDPETGEY 2517
Vac_Fusion: domain 1 of 1, from 2548 to 2552: score 1.7, E = 1.4
*->DvQTG<-*
DvQTG
gi|1134769 2548 DVQTG 2552
EspB: domain 1 of 1, from 2575 to 2602: score -1.2, E = 5
*->mntiDynnqviavnsvsesttgsasata<-*
ntiD + v e t g++ ++
gi|1134769 2575 FNTIDITAPTSKVEELPETTSGAEIEVT 2602
SoxZ: domain 1 of 1, from 2595 to 2619: score 7.3, E = 0.12
CS -EE.EEEEEEETTS-EEEEEEEE--
*->aGdelkfsWtDnkGssetaeakItv<-*
+G e++++Wt+++++s+ a+ +I v
gi|1134769 2595 SGAEIEVTWTGEDQGSGVATYDIYV 2619
FlgD: domain 4 of 4, from 2658 to 2690: score 0.5, E = 10
*->mtsvssatgsssasttsasssss...selgkdd<-*
+ v ++t +++a+t+ ++s+++++ +el+k++
gi|1134769 2658 VGQVETTTAQAQATTKVKESNKAptaLELDKET 2690
Cna_B: domain 1 of 1, from 2673 to 2705: score 1.2, E = 7.9
CS EEEEEE.TTEEEEEEEEESSS-............EEEEEE
*->tvkEtklAPtGYtltttpveftitensdgeeekivtvtit<-*
+vkE++ APt +l++++++ ++++ns v +t++
gi|1134769 2673 KVKESNKAPTALELDKETIDENVAANS-------VVGTFS 2705
Cadherin: domain 1 of 2, from 2687 to 2775: score 18.7, E = 0.00012
CS --EEE-SS...S---EEEEE---S..-TTTT----------S S-
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg
++ En++ ++ v+t+ tD+D p +Y+++ g+ +++++
gi|1134769 2687 DKETIDENVAANSVVGTFSTTDPD----PGDTFTYALVAGEGdtdNQ 2729
CS ---B-TTSSEEE..E---S---S.....S-B--EEE----.........S
wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp
+F+I+ ++ +++ + D E+ ++Y++ v tD+
gi|1134769 2730 TFTIEG--NQ----LKINSSPDFETK--PTYNIRVQTTDR---------N 2762
CS ---EEEE--EEE-
plsstatvtitVl<-*
s ++ti+V
gi|1134769 2763 VASYQEQLTINVN 2775
QH-AmDH_gamma: domain 1 of 1, from 2698 to 2709: score 3.8, E = 2.4
CS -STTTS---SSS
*->nalvGCtsttDP<-*
n++vG sttDP
gi|1134769 2698 NSVVGTFSTTDP 2709
DUF1983: domain 1 of 1, from 2708 to 2740: score 1.2, E = 9.4
*->npnngGnittP............FVvqtenGQVfi<-*
+p++g++ t++ +++++++++F ++ ++Q+ i
gi|1134769 2708 DPDPGDTFTYAlvagegdtdnqtFTIE--GNQLKI 2740
DUF1664: domain 1 of 1, from 2732 to 2737: score 0.2, E = 9.7
*->rIEgnQ<-*
+IEgnQ
gi|1134769 2732 TIEGNQ 2737
He_PIG: domain 1 of 2, from 2748 to 2763: score 1.2, E = 15
*->vqpGsytftvtatdgsg<-*
+ p +y+++v+ td+ +
gi|1134769 2748 TKP-TYNIRVQTTDRNV 2763
EIF_2_alpha: domain 1 of 1, from 2750 to 2761: score 3.0, E = 3.1
CS SEEEEEEEES-G
*->PrYritvtapDy<-*
P Y i+v+++D+
gi|1134769 2750 PTYNIRVQTTDR 2761
Cadherin: domain 2 of 2, from 2791 to 2875: score 9.1, E = 0.069
CS E-SS...S---EEEEE---S..-TTTT----------S S----B
*->vpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...ggwFrI
+ En+++++ v+ + +D+D + +Y ++ g+ +++++ F+I
gi|1134769 2791 IDENVAPNSVVGEFYTVDPD----SGDSFTYELVTGEGdkdNQAFTI 2833
CS -TTSSEEE..E---S---S.....S-B--EEE----.........S---E
dpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggpplss
+ + +++ + D+E++ + Y++ v tD+ s
gi|1134769 2834 EA--DQ----LRINDSPDYESQ--SSYNIRVQTTDR---------NVASY 2866
CS EEE--EEE-
tatvtitVl<-*
++ti+V
gi|1134769 2867 QEQLTINVN 2875
RE_Eco47II: domain 1 of 1, from 2811 to 2825: score 2.3, E = 2.9
*->sgdqF.YeLVTGieD<-*
sgd+F+YeLVTG+ D
gi|1134769 2811 SGDSFtYELVTGEGD 2825
CheY-binding: domain 1 of 1, from 2831 to 2841: score 4.9, E = 1.9
CS TTS-GGGEEEE
*->FVIDpdQIeie<-*
F I++dQ++i
gi|1134769 2831 FTIEADQLRIN 2841
He_PIG: domain 2 of 2, from 2832 to 2863: score 3.6, E = 3
*->tLdsstGritGtPtptvqpGsytftvtatdgsg<-*
t++++ +ri+ +P++ +q sy+++v+ td+ +
gi|1134769 2832 TIEADQLRINDSPDYESQS-SYNIRVQTTDRNV 2863
DUF1654: domain 2 of 2, from 2874 to 2903: score 2.7, E = 5.9
*->leelaEtdgieLafedDgsVrirWerpked<-*
+ ++E + ++ +f+ Dg i W +
gi|1134769 2874 VNDIDESEPVQFDFNADGVADILWRHKSHK 2903
FG-GAP: domain 1 of 6, from 2878 to 2910: score 13.3, E = 0.0068
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d...gsvyll<-*
s ++ D+n DG +D+++ +++++++g +++
gi|1134769 2878 DESEPVQFDFNADGVADILW-------RHkShknGPNRIW 2910
Leader_CPA1: domain 1 of 2, from 2890 to 2902: score 1.6, E = 13
*->DYiSDHiWkalsh<-*
D + D +W+ +sh
gi|1134769 2890 DGVADILWRHKSH 2902
FG-GAP: domain 2 of 6, from 2929 to 2962: score 13.2, E = 0.0071
CS CCSCEEEC -TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaag.DlnGDGrpDlvvgaPgadggt.d...gsvyll<-*
++ va++ D+n DG +D+++ +++++++g +++
gi|1134769 2929 SAWDVAGVaDFNTDGVADILW-------RHqShknGPNRIW 2962
Leader_CPA1: domain 2 of 2, from 2942 to 2954: score 0.4, E = 29
*->DYiSDHiWkalsh<-*
D + D +W+ +sh
gi|1134769 2942 DGVADILWRHQSH 2954
NDT80_PhoG: domain 1 of 1, from 2975 to 2982: score -0.2, E = 9
CS -GGGSGGG
*->SPsnYqsr<-*
+P+n++s+
gi|1134769 2975 NPGNFHSA 2982
6PGD: domain 1 of 1, from 2976 to 2984: score -1.6, E = 8.4
CS T-E.B----S-
*->eGgeFFHTnWt<-*
+G FH W
gi|1134769 2976 PGN--FHSAWD 2984
FG-GAP: domain 3 of 6, from 2981 to 3014: score 13.9, E = 0.0046
CS CCSCEEEC -TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaag.DlnGDGrpDlvvgaPgadggt.d...gsvyll<-*
++ va++ D+n DG +D+++ +++++++g +++
gi|1134769 2981 SAWDVAGVaDFNTDGVDDILW-------RHqShknGPNRIW 3014
FG-GAP: domain 4 of 6, from 3033 to 3066: score 18.3, E = 0.00023
CS CCSCEEEC -TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaag.DlnGDGrpDlvvgaPgadggt.d...gsvyll<-*
++ va++ D+n DG +D+++ +++++++g+ +++
gi|1134769 3033 SAWDVAGVaDFNADGVDDILW-------RHqShnnGQNRIW 3066
FG-GAP: domain 5 of 6, from 3086 to 3118: score 17.7, E = 0.00036
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d...gsvyll<-*
++++D+n DG +D+++ +++++++g+ +++
gi|1134769 3086 AWDVAGVADFNADGVDDILW-------RHqShnnGQNRIW 3118
FG-GAP: domain 6 of 6, from 3138 to 3167: score 9.2, E = 0.11
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
++++D+n DG +D+ + ++++g+ +++
gi|1134769 3138 AWDVAGVADFNTDGVADIHW-------RDqSGANRIW 3167
//