hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 113477819.fa
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Query sequence: gi|113477819|ref|YP_723880.1|
Accession: [none]
Description: hypothetical protein Tery_4419 [Trichodesmium erythraeum IMS101]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RBD-FIP FIP domain 6.8 0.78 1
OstA OstA-like protein 4.5 0.81 1
DUF1968 Domain of unknown function (DUF1968) 3.6 0.97 1
FliX Class II flagellar assembly regulator 2.6 1.3 1
TBCC Tubulin binding cofactor C 2.8 1.9 1
PAP_central Poly(A) polymerase central domain 2.3 2.5 1
Nucleoporin2 Nucleoporin autopeptidase 1.5 2.6 1
YaeQ YaeQ protein 1.9 2.7 1
Bundlin Bundlin 2.4 2.8 1
Tubulin_C Tubulin/FtsZ family, C-terminal domai 2.4 3.3 1
DUF892 Protein of unknown function (DUF892) 2.6 3.7 1
PEGA PEGA domain 3.2 3.7 1
Chlam_PMP Chlamydia polymorphic membrane protei 5.3 3.8 1
Filo_VP35 Filoviridae VP35 0.8 4.1 1
P4Ha_N Prolyl 4-Hydroxylase alpha-subunit, N 1.8 5.6 1
RecA recA bacterial DNA recombination prot -0.4 5.9 1
Kunitz_legume Trypsin and protease inhibitor 1.6 6.5 1
PsaL Photosystem I reaction centre subunit 0.9 6.5 1
Bact_transglu_N Bacterial transglutaminase-like N-ter 2.5 7.2 1
DUF1995 Domain of unknown function (DUF1995) 0.6 7.5 1
CholecysA-Rec_N Cholecystokinin A receptor, N-termina 1.5 8.9 1
TAF TATA box binding protein associated f 1.5 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Filo_VP35 1/1 49 57 .. 328 336 .] 0.8 4.1
YaeQ 1/1 63 77 .. 162 176 .] 1.9 2.7
DUF892 1/1 102 119 .. 146 163 .] 2.6 3.7
P4Ha_N 1/1 148 158 .. 130 140 .] 1.8 5.6
RBD-FIP 1/1 173 187 .. 34 48 .] 6.8 0.78
DUF1968 1/1 305 311 .. 1 7 [. 3.6 0.97
PAP_central 1/1 311 921 .. 45 67 .. 2.3 2.5
Bact_transglu_N 1/1 357 372 .. 66 81 .] 2.5 7.2
FliX 1/1 363 400 .. 1 42 [. 2.6 1.3
Nucleoporin2 1/1 521 531 .. 158 168 .. 1.5 2.6
PsaL 1/1 620 647 .. 95 122 .. 0.9 6.5
TBCC 1/1 743 756 .. 107 120 .] 2.8 1.9
TAF 1/1 752 761 .. 56 66 .] 1.5 10
Tubulin_C 1/1 752 774 .. 79 106 .. 2.4 3.3
Bundlin 1/1 767 784 .. 80 97 .] 2.4 2.8
RecA 1/1 793 813 .. 57 74 .. -0.4 5.9
Kunitz_legume 1/1 817 824 .. 1 8 [. 1.6 6.5
Chlam_PMP 1/1 818 848 .. 1 19 [] 5.3 3.8
PEGA 1/1 864 878 .. 1 15 [. 3.2 3.7
DUF1995 1/1 868 881 .. 277 290 .] 0.6 7.5
CholecysA-Rec_N 1/1 876 885 .. 1 11 [. 1.5 8.9
OstA 1/1 894 916 .. 141 163 .. 4.5 0.81
Alignments of top-scoring domains:
Filo_VP35: domain 1 of 1, from 49 to 57: score 0.8, E = 4.1
*->dGktlgLKI<-*
dGkt g KI
gi|1134778 49 DGKTSGIKI 57
YaeQ: domain 1 of 1, from 63 to 77: score 1.9, E = 2.7
*->wlsdddgsvevtpev<-*
+++d +g+v++t+++
gi|1134778 63 MITDAGGTVALTLTE 77
DUF892: domain 1 of 1, from 102 to 119: score 2.6, E = 3.7
*->TdekLtelaeatvnkkae<-*
Tde ++++ea++nkka
gi|1134778 102 TDETNLQHQEAGINKKAI 119
P4Ha_N: domain 1 of 1, from 148 to 158: score 1.8, E = 5.6
*->kdLAkGvLnGv<-*
++LA+GvL+G
gi|1134778 148 EELANGVLPGR 158
RBD-FIP: domain 1 of 1, from 173 to 187: score 6.8, E = 0.78
*->LvrImEetPsILevk<-*
+vr++Ee+P+ L +
gi|1134778 173 IVRVLEEHPQVLSIH 187
DUF1968: domain 1 of 1, from 305 to 311: score 3.6, E = 0.97
*->PAVYQLr<-*
PAVYQ r
gi|1134778 305 PAVYQIR 311
PAP_central: domain 1 of 1, from 311 to 921: score 2.3, E = 2.5
CS HHHHHHHHHHHHHHHHHH
RF xxxxxxxxxxxxxxxxxx
*->ReeVLgkLnqlVkewVke.............................
Re VL+ Ln l++e+++ ++++ + + + ++ ++ ++ +++
gi|1134778 311 REGVLKELNPLTREFIDIgdtgiasinaaglnradnymyamervtgt 357
CS
RF
..................................................
+++ + +++++ + ++++++++++ + + ++ +++++ ++ ++++
gi|1134778 358 shrlvridstgtveyvtssggtssnsadaftlttansskpaagdvddkgy 407
CS
RF
..................................................
+++++++ +++ + + +++++ ++++ ++ ++ + ++ ++
gi|1134778 408 lwvvfksededsinssvyrikltdpshvstgeintiwtnvdwheiaedva 457
CS
RF
..................................................
+ ++++ + ++ ++ + + + + + ++ + ++ +++ + +
gi|1134778 458 yvnadgkdylfgvnsvgrifeidisaaavdqdvntitqlvpdmsssvnir 507
CS
RF
..................................................
+ ++++++++ ++ + ++ ++ ++++ + ++++++ ++++ +
gi|1134778 508 dangnsttnrligdfisfdpitgversnfeaawtgsegglyvskngqayn 557
CS
RF
..................................................
+ ++++ +++ ++ +++++ + +++++ ++++ ++ + + + ++
gi|1134778 558 manfspdeqpdraaeelvsntdgqniretdgvstsdlssvfhiplidlng 607
CS
RF
..................................................
+++++++ ++ + + ++ +++++ + ++++++ +++++++++ +++
gi|1134778 608 tetgdknlddvdydagtftegdpavdivetttgtvpnpenpsnpvfnngl 657
CS
RF
..................................................
++ + +++++ ++ +++++++ + +++ + + + ++ ++++
gi|1134778 658 iikdyinisdpdnittatnnnnsgvvsagdrlatatvtltnaydgdellv 707
CS
RF
..................................................
++ + ++ +++ ++ + + +++++ ++++ + +++++++ + ++ +
gi|1134778 708 ssatvadgasttvgsitiaragtgntagtnnialtltpttgttasvddfn 757
CS
RF
..................................................
+ +++++ +++++++ ++ +++++++ ++++++++++++
gi|1134778 758 aaikaiqfkntseapnntnrtiqfvltdadgntsdeifgpdsggrkhttt 807
CS
RF
..................................................
++ + + +++++++ ++++ +++ +++++ ++++ + ++
gi|1134778 808 vavqavndapvldldgnnsstatgsdykttftegggavaigdsdvsitda 857
CS
RF
..................................................
++ + ++ + + ++++++++ ++ +++ +++ + + +++++ + ++
gi|1134778 858 ddiniesatitlgsrpdgdtvesllvngtlpgtisagaydsstgvitltg 907
CS SSS-B
RF xxxxx
.........alprv<-*
+ + + a+ ++
gi|1134778 908 satlsqyqaAIAQI 921
Bact_transglu_N: domain 1 of 1, from 357 to 372: score 2.5, E = 7.2
*->gphdeLtIeaesvVet<-*
+ h+ ++I+++++Ve
gi|1134778 357 TSHRLVRIDSTGTVEY 372
FliX: domain 1 of 1, from 363 to 400: score 2.6, E = 1.3
*->MrisGprgttaasggkakksrasGgksaFalplvaaagsase<-*
ri +++ ++ +++++++ ++ ++ aF+l+++++ +a++
gi|1134778 363 -RIDSTGTVEYVTSSGGT--SSNSA-DAFTLTTANSSKPAAG 400
Nucleoporin2: domain 1 of 1, from 521 to 531: score 1.5, E = 2.6
*->eFisYdPetGv<-*
+Fis+dP+tGv
gi|1134778 521 DFISFDPITGV 531
PsaL: domain 1 of 1, from 620 to 647: score 0.9, E = 6.5
*->YGvvsFqeGEPSpspalstvttpnppdd<-*
Y + +F+eG+P + ++++t++t +p++
gi|1134778 620 YDAGTFTEGDPAVDIVETTTGTVPNPEN 647
TBCC: domain 1 of 1, from 743 to 756: score 2.8, E = 1.9
*->LepetNnwadVdDF<-*
L p+t+ +a+VdDF
gi|1134778 743 LTPTTGTTASVDDF 756
TAF: domain 1 of 1, from 752 to 761: score 1.5, E = 10
CS -HHHHHHH.H-
*->TvdDidsALLR<-*
+vdD++ A ++
gi|1134778 752 SVDDFNAA-IK 761
Tubulin_C: domain 1 of 1, from 752 to 774: score 2.4, E = 3.3
CS -CCHHHHHHHHHHHCT-.--B-TTSEEE
*->slkEvneaiqrireknsdaqFVeWapii<-*
s +++n+ai +i+ kn+ +ap++
gi|1134778 752 SVDDFNAAIKAIQFKNT-----SEAPNN 774
Bundlin: domain 1 of 1, from 767 to 784: score 2.4, E = 2.8
*->ntsAiPDnyKdakrtklt<-*
nts P n ++ + +lt
gi|1134778 767 NTSEAPNNTNRTIQFVLT 784
RecA: domain 1 of 1, from 793 to 813: score -0.4, E = 5.9
CS EEEESTTSSH HHHHHHHH
*->EIYGPESSGK...TTlaLhaI<-*
EI+GP S G +++TT+a +a+
gi|1134778 793 EIFGPDSGGRkhtTTVAVQAV 813
Kunitz_legume: domain 1 of 1, from 817 to 824: score 1.6, E = 6.5
CS B-BETTSC
*->pVLDtdGn<-*
pVLD dGn
gi|1134778 817 PVLDLDGN 824
Chlam_PMP: domain 1 of 1, from 818 to 848: score 5.3, E = 3.8
*->ditFsgNsa............aggGGAiyas<-*
++++gN +++ ++++ +++ ++gGGA+
gi|1134778 818 VLDLDGNNSstatgsdykttfTEGGGAVAIG 848
PEGA: domain 1 of 1, from 864 to 878: score 3.2, E = 3.7
*->tgtLsvsSnPsGAtV<-*
++t+++ S+P G+tV
gi|1134778 864 SATITLGSRPDGDTV 878
DUF1995: domain 1 of 1, from 868 to 881: score 0.6, E = 7.5
*->efeeRPtgEeidal<-*
++ +RP+g++++ l
gi|1134778 868 TLGSRPDGDTVESL 881
CholecysA-Rec_N: domain 1 of 1, from 876 to 885: score 1.5, E = 8.9
CS -HCHCCCCCCC
*->mdvvdsLlvng<-*
d v+sLlvng
gi|1134778 876 -DTVESLLVNG 885
OstA: domain 1 of 1, from 894 to 916: score 4.5, E = 0.81
*->aeYdskkriivLtGnAvltsclp<-*
+ Yds++ +i+LtG A+l+++++
gi|1134778 894 GAYDSSTGVITLTGSATLSQYQA 916
//