hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            113478229.fa
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Query sequence: gi|113478229|ref|YP_724290.1|
Accession:      [none]
Description:    hypothetical protein Tery_4891 [Trichodesmium erythraeum IMS101]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
AMMECR1         AMMECR1                                   4.7       0.51   1
Plasmid_Txe     Plasmid encoded toxin Txe                 0.8        1.8   1
Sigma70_r3      Sigma-70 region 3                         3.1        5.1   1
Podoplanin      Podoplanin                                0.1        6.4   1
DsrH            DsrH like protein                         1.8        6.8   1
Bac_transf      Bacterial sugar transferase              -0.7        9.7   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
AMMECR1           1/1      45    65 ..   115   137 ..     4.7     0.51
Bac_transf        1/1      45    59 ..   145   159 ..    -0.7      9.7
Plasmid_Txe       1/1     188   196 ..     1     9 [.     0.8      1.8
DsrH              1/1     227   238 ..    87    98 .]     1.8      6.8
Podoplanin        1/1     286   293 ..   172   179 .]     0.1      6.4
Sigma70_r3        1/1     309   322 ..     1    14 [.     3.1      5.1

Alignments of top-scoring domains:
AMMECR1: domain 1 of 1, from 45 to 65: score 4.7, E = 0.51
                CS    .S-CCCGGGG--..TTT-EEEEE
                   *->VkdpeelpekldWevGrHGLiie<-*
                      V+d+++l++ ++  +G +G++++
  gi|1134782    45    VDDYQQLLHSIK--PGIDGVVLN    65

Bac_transf: domain 1 of 1, from 45 to 59: score -0.7, E = 9.7
                   *->ipeyarRrhrVkPGI<-*
                      +++y++  h++kPGI
  gi|1134782    45    VDDYQQLLHSIKPGI    59

Plasmid_Txe: domain 1 of 1, from 188 to 196: score 0.8, E = 1.8
                   *->FteeaWeDY<-*
                      Ft+e++ DY
  gi|1134782   188    FTSESLADY    196

DsrH: domain 1 of 1, from 227 to 238: score 1.8, E = 6.8
                CS    HHHHTTTTSS--
                   *->VdLtvkhdkvit<-*
                      V+Lt+++dk  +
  gi|1134782   227    VSLTETEDKITA    238

Podoplanin: domain 1 of 1, from 286 to 293: score 0.1, E = 6.4
                   *->KiSGRySP<-*
                      K SG +SP
  gi|1134782   286    KFSGEFSP    293

Sigma70_r3: domain 1 of 1, from 309 to 322: score 3.1, E = 5.1
                   *->PvHvvEllnkikrA<-*
                      P  ++E+lnk+ ++
  gi|1134782   309    PNNIQEQLNKVGKV    322

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