hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 114609614.fa
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Query sequence: gi|114609614|ref|XP_518768.2|
Accession: [none]
Description: PREDICTED: similar to OTTHUMP00000017301 [Pan troglodytes]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RhoGEF RhoGEF domain 119.1 7.2e-35 1
F-box F-box domain 30.3 1.2e-07 2
PsbI Photosystem II reaction centre I prot 8.7 0.098 1
DUF2227 Uncharacterized metal-binding protein 4.7 0.25 1
ANATO Anaphylotoxin-like domain 3.3 0.27 1
vATP-synt_E ATP synthase (E/31 kDa) subunit 4.5 0.36 1
Pox_P4A Poxvirus P4A protein 2.4 0.41 1
NikR_C NikR C terminal nickel binding domain 6.4 0.42 1
SMI1_KNR4 SMI1 / KNR4 family 5.6 0.47 1
Tfb2 Transcription factor Tfb2 -0.1 0.47 1
Stb3 Putative Sin3 binding protein 4.5 0.64 1
CDC73 RNA pol II accessory factor, Cdc73 fa 3.3 0.87 1
PH PH domain 4.7 1.1 1
DUF509 Protein of unknown function (DUF509) 3.7 1.1 1
FdhD-NarQ FdhD/NarQ family 3.4 1.5 1
Radical_SAM_N Radical SAM N-terminal 2.0 1.7 1
IL6 Interleukin-6/G-CSF/MGF family 2.8 1.9 1
DUF444 Protein of unknown function (DUF444) 1.8 2.2 1
ELK ELK domain 4.7 2.3 1
Tsp45I Tsp45I type II restriction enzyme 0.5 2.4 1
ZipA_C ZipA, C-terminal FtsZ-binding domain 3.4 2.6 1
RPN7 26S proteasome subunit RPN7 2.4 3.4 1
Baculo_helicase Baculovirus DNA helicase -1.4 3.7 1
DUF1284 Protein of unknown function (DUF1284) 1.2 4.5 1
TolA TolA protein 0.1 4.7 1
Jnk-SapK_ap_N JNK_SAPK-associated protein-1 1.5 4.8 1
TraI_2 Putative helicase 0.6 4.8 1
PAAD_DAPIN PAAD/DAPIN/Pyrin domain 3.2 4.8 1
Herpes_U5 Herpesvirus U5-like family 0.8 4.8 1
DUF2362 Uncharacterized conserved protein (DU -0.2 5.3 1
Phospholip_A2_1 Phospholipase A2 1.8 5.4 1
SfsA Sugar fermentation stimulation protei 1.1 5.5 1
DASH_Dad1 DASH complex subunit Dad1 1.9 5.5 1
GerE Bacterial regulatory proteins, luxR f 3.0 5.6 1
RteC RteC protein 1.1 5.8 1
Mgm101p Mitochondrial genome maintenance MGM1 -1.0 6.3 1
DUF373 Domain of unknown function (DUF373) -0.9 7.4 1
Citrate_ly_lig Citrate lyase ligase C-terminal domai 0.5 8.4 1
Peptidase_M74 Penicillin-insensitive murein endopep -0.2 8.4 1
TIP120 TATA-binding protein interacting (TIP 0.5 8.7 1
PCI PCI domain 1.5 8.7 1
DUF143 Domain of unknown function DUF143 -0.6 9.8 1
LON ATP-dependent protease La (LON) domai -0.0 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PsbI 1/1 70 94 .. 1 25 [. 8.7 0.098
Baculo_helicase 1/1 74 86 .. 1271 1283 .] -1.4 3.7
F-box 1/2 76 123 .. 1 46 [] 29.3 2.4e-07
Mgm101p 1/1 103 109 .. 240 246 .] -1.0 6.3
DUF1284 1/1 114 123 .. 106 115 .] 1.2 4.5
GerE 1/1 152 160 .. 1 9 [. 3.0 5.6
TraI_2 1/1 166 200 .. 1 35 [. 0.6 4.8
ZipA_C 1/1 171 190 .. 112 131 .] 3.4 2.6
Herpes_U5 1/1 192 210 .. 531 551 .] 0.8 4.8
DUF509 1/1 230 240 .. 142 152 .] 3.7 1.1
FdhD-NarQ 1/1 286 311 .. 193 217 .. 3.4 1.5
Radical_SAM_N 1/1 296 306 .. 344 354 .] 2.0 1.7
SfsA 1/1 305 333 .. 196 223 .] 1.1 5.5
DUF373 1/1 309 333 .. 132 156 .. -0.9 7.4
NikR_C 1/1 309 320 .. 1 12 [. 6.4 0.42
DUF143 1/1 325 341 .. 1 17 [. -0.6 9.8
Peptidase_M74 1/1 339 347 .. 1 9 [. -0.2 8.4
CDC73 1/1 367 384 .. 297 314 .] 3.3 0.87
DUF2227 1/1 406 442 .. 155 189 .. 4.7 0.25
SMI1_KNR4 1/1 451 466 .. 127 142 .] 5.6 0.47
DASH_Dad1 1/1 457 466 .. 68 77 .] 1.9 5.5
IL6 1/1 458 472 .. 140 154 .] 2.8 1.9
Tfb2 1/1 462 476 .. 1 15 [. -0.1 0.47
vATP-synt_E 1/1 463 476 .. 196 209 .] 4.5 0.36
DUF2362 1/1 508 533 .. 1 26 [. -0.2 5.3
PAAD_DAPIN 1/1 510 525 .. 1 16 [. 3.2 4.8
LON 1/1 568 590 .. 207 229 .] -0.0 9.8
RhoGEF 1/1 583 766 .. 1 207 [] 119.1 7.2e-35
RteC 1/1 641 652 .. 218 229 .. 1.1 5.8
Phospholip_A2_1 1/1 666 690 .. 100 127 .] 1.8 5.4
RPN7 1/1 676 694 .. 85 103 .. 2.4 3.4
DUF444 1/1 695 706 .. 446 457 .] 1.8 2.2
Tsp45I 1/1 707 732 .. 309 334 .] 0.5 2.4
Stb3 1/1 708 720 .. 1 16 [. 4.5 0.64
TIP120 1/1 755 770 .. 182 197 .] 0.5 8.7
Jnk-SapK_ap_N 1/1 757 771 .. 145 159 .] 1.5 4.8
ELK 1/1 758 772 .. 8 22 .] 4.7 2.3
PCI 1/1 761 775 .. 121 135 .] 1.5 8.7
Pox_P4A 1/1 761 780 .. 1324 1343 .] 2.4 0.41
ANATO 1/1 804 809 .. 33 38 .] 3.3 0.27
PH 1/1 828 912 .. 21 92 .] 4.7 1.1
TolA 1/1 848 868 .. 1 22 [. 0.1 4.7
F-box 2/2 849 869 .. 28 46 .] 1.0 28
Citrate_ly_lig 1/1 852 858 .. 184 190 .] 0.5 8.4
Alignments of top-scoring domains:
PsbI: domain 1 of 1, from 70 to 94: score 8.7, E = 0.098
*->mltLkifvYavvilFvsLFiFGfLs<-*
m + k+ +v+ F+sL+iF fLs
gi|1146096 70 MQVAKVDFSTVLPRFISLYIFSFLS 94
Baculo_helicase: domain 1 of 1, from 74 to 86: score -1.4, E = 3.7
*->kkDFntnvPkFKc<-*
k DF t+ P+F++
gi|1146096 74 KVDFSTVLPRFIS 86
F-box: domain 1 of 2, from 76 to 123: score 29.3, E = 2.4e-07
CS -HHHHS-HHHHHHHHTTS-HHHHHHHTTT-HHHHHHHCT- HHH HH
*->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
+ LP + l I+s+L+pkdl+++++VS+ w+ l + lw +k+
gi|1146096 76 DFSTVLPRFISLYIFSFLSPKDLCAAAQVSWPWKFLTEQDcLWMpKC 122
CS H
l<-*
gi|1146096 123 V 123
Mgm101p: domain 1 of 1, from 103 to 109: score -1.0, E = 6.3
*->qveYPYK<-*
qv+ P+K
gi|1146096 103 QVSWPWK 109
DUF1284: domain 1 of 1, from 114 to 123: score 1.2, E = 4.5
*->ggCeWlelGy<-*
++C W+++++
gi|1146096 114 QDCLWMPKCV 123
GerE: domain 1 of 1, from 152 to 160: score 3.0, E = 5.6
CS --SS-HHHH
*->ldsLspREr<-*
ld+L+pRE+
gi|1146096 152 LDWLTPREA 160
TraI_2: domain 1 of 1, from 166 to 200: score 0.6, E = 4.8
*->GltqPaavseqlLltprRqeLiekIwqrlslsrad<-*
l +P++ +e lL + r L +Iw+ +l++++
gi|1146096 166 TLNEPKTEDEELLERQREKCLRKRIWEKIALRKKE 200
ZipA_C: domain 1 of 1, from 171 to 190: score 3.4, E = 2.6
CS EETTSSB--HHHHHHHHHHH
*->LDeqRniltaQrieaYrdri<-*
++e ++l +Qr++ r+ri
gi|1146096 171 KTEDEELLERQREKCLRKRI 190
Herpes_U5: domain 1 of 1, from 192 to 210: score 0.8, E = 4.8
*->eeravrqkleslrkrllprvy<-*
e +a+r+k +l+k ++p+v
gi|1146096 192 EKIALRKK--ELFKVRPPWVS 210
DUF509: domain 1 of 1, from 230 to 240: score 3.7, E = 1.1
CS ...HH------
*->VlErvALvEav<-*
V+Erv+L Ea+
gi|1146096 230 VRERVGLHEAL 240
FdhD-NarQ: domain 1 of 1, from 286 to 311: score 3.4, E = 1.5
*->lrksfllvSGRiS.semvqKaaraGv<-*
lr f l S+Ri+ +emv +++aGv
gi|1146096 286 LRPHFMLISSRIPaYEMVVESVKAGV 311
Radical_SAM_N: domain 1 of 1, from 296 to 306: score 2.0, E = 1.7
*->kIPAyemIKfS<-*
+IPAyem+ S
gi|1146096 296 RIPAYEMVVES 306
SfsA: domain 1 of 1, from 305 to 333: score 1.1, E = 5.5
*->eAleaGVevlvyrvkvdlee.lrlvrpls<-*
e+++aGV ++vy+ +v+le l l++++
gi|1146096 305 ESVKAGVVSVVYEHSVTLESlLYLIEKAL 333
DUF373: domain 1 of 1, from 309 to 333: score -0.9, E = 7.4
*->eavkrVIVrQsegiEStYYlIakyL<-*
++v +V+ ++s ++ES YlI k+L
gi|1146096 309 AGVVSVVYEHSVTLESLLYLIEKAL 333
NikR_C: domain 1 of 1, from 309 to 320: score 6.4, E = 0.42
CS EEEEEEEEETTS
*->vGtitlVYDHhk<-*
+G++++VY H++
gi|1146096 309 AGVVSVVYEHSV 320
DUF143: domain 1 of 1, from 325 to 341: score -0.6, E = 9.8
*->llelivealdDkKAeDI<-*
ll li +ald KA+ I
gi|1146096 325 LLYLIEKALDGQKAQSI 341
Peptidase_M74: domain 1 of 1, from 339 to 347: score -0.2, E = 8.4
*->qSIGsYanG<-*
qSIG ++ G
gi|1146096 339 QSIGIFSDG 347
CDC73: domain 1 of 1, from 367 to 384: score 3.3, E = 0.87
*->ravvsqfWetLEkfvrkr<-*
r+ v+ fWe+L +v+
gi|1146096 367 RPEVRDFWEKLGSYVATE 384
DUF2227: domain 1 of 1, from 406 to 442: score 4.7, E = 0.25
*->lqshpeellafllA..GLelGawlHsIaDwvvsawkr<-*
l++ ++++++f+ A++G +G+ H+++Dw++s w +
gi|1146096 406 LSQLSQLTGTFFTAptGIATGSYQHILSDWLGSQWGK 442
SMI1_KNR4: domain 1 of 1, from 451 to 466: score 5.6, E = 0.47
*->deivvvAdSFeefLek<-*
+++ + ++SF++fLe+
gi|1146096 451 ESKLQTWSSFTDFLEE 466
DASH_Dad1: domain 1 of 1, from 457 to 466: score 1.9, E = 5.5
*->WkhFynglne<-*
W+ F ++l+e
gi|1146096 457 WSSFTDFLEE 466
IL6: domain 1 of 1, from 458 to 472: score 2.8, E = 1.9
CS HHHHHHHHHHHHHHH
*->rsLeeFLefslRAlR<-*
+s+ +FLe +l +R
gi|1146096 458 SSFTDFLEETLKTVR 472
Tfb2: domain 1 of 1, from 462 to 476: score -0.1, E = 0.47
*->dFLetipspvlqRLY<-*
dFLe+ + v+ LY
gi|1146096 462 DFLEETLKTVRKQLY 476
vATP-synt_E: domain 1 of 1, from 463 to 476: score 4.5, E = 0.36
*->vfeqlLpeIrkaLF<-*
+ e+ L+++rk+L+
gi|1146096 463 FLEETLKTVRKQLY 476
DUF2362: domain 1 of 1, from 508 to 533: score -0.2, E = 5.3
*->qenvseleqqimklqqmPpGKfmeyl<-*
q+ ++ l++ +m l + ++ K++e+l
gi|1146096 508 QDTAQALADGLMELSKEDSDKPLEFL 533
PAAD_DAPIN: domain 1 of 1, from 510 to 525: score 3.2, E = 4.8
CS HHHHHHHHHHHS-HHH
*->krilLlkyLEeLndee<-*
+ + L ++L+eL++e+
gi|1146096 510 TAQALADGLMELSKED 525
LON: domain 1 of 1, from 568 to 590: score -0.0, E = 9.8
*->KQelLEtldvkeRLekllelLek<-*
K ++L+ ++ ++R + + elL++
gi|1146096 568 KERILQKDSAEKRARVVRELLQS 590
RhoGEF: domain 1 of 1, from 583 to 766: score 119.1, E = 7.2e-35
*->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
v++Ell++E+kYv+ Lei+++vy +pL++a +s +++L++ i++iF
gi|1146096 583 VVRELLQSERKYVQILEIVRDVYVAPLKAALSSNRAILSAANIQIIF 629
sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk
+i i++++r+FL+ L +r++++ +a ++G ++ ++
gi|1146096 630 CDILQILSLNRQFLD-NLRDRLQEW-----------GPAHCVGEIVTKF- 666
aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd
++l+ Y+ + +n+p+ +++ek +++ +p+F+ fl++ + t
gi|1146096 667 GSQLNTYTNFFNNYPVILKTIEK--CREMIPAFRTFLKRHDKTIVTK--- 711
davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda
l+L+ LLl+P qR Y LL +htp+ ++ ++ dL a+d+
gi|1146096 712 ---MLSLPELLLYPSQRFEEYLNLLYAVRLHTPA--EHVDRGDLTTAIDQ 756
lqdlaksiNe<-*
++ +i++
gi|1146096 757 IKKYKGYIDQ 766
RteC: domain 1 of 1, from 641 to 652: score 1.1, E = 5.8
*->yFLDrLkekLlK<-*
+FLD+L+++L++
gi|1146096 641 QFLDNLRDRLQE 652
Phospholip_A2_1: domain 1 of 1, from 666 to 690: score 1.8, E = 5.4
CS HHHTG-GG--GGGBTCGGCGSHSSHHHT
*->FarnlpnTYNkkywaYpsnicteeserC<-*
F l nTY + +Yp + t e+C
gi|1146096 666 FGSQL-NTYTNFFNNYPVILKT--IEKC 690
RPN7: domain 1 of 1, from 676 to 694: score 2.4, E = 3.4
*->ffnDwdlVskyiekAksli<-*
ffn++++++k iek++++i
gi|1146096 676 FFNNYPVILKTIEKCREMI 694
DUF444: domain 1 of 1, from 695 to 706: score 1.8, E = 2.2
*->pVfrelFqkeea<-*
p+fr+++++ ++
gi|1146096 695 PAFRTFLKRHDK 706
Tsp45I: domain 1 of 1, from 707 to 732: score 0.5, E = 2.4
*->yivtSvLlLrdliAELY..QKGEEALGl<-*
+ivt L L++l LY++Q+ EE L l
gi|1146096 707 TIVTKMLSLPEL--LLYpsQRFEEYLNL 732
Stb3: domain 1 of 1, from 708 to 720: score 4.5, E = 0.64
*->iTPamLaKfhLPelLl<-*
i+ +mL+ LPelLl
gi|1146096 708 IVTKMLS---LPELLL 720
TIP120: domain 1 of 1, from 755 to 770: score 0.5, E = 8.7
*->dknpvwsefvsqikkn<-*
d++ +++ +++q+k n
gi|1146096 755 DQIKKYKGYIDQMKQN 770
Jnk-SapK_ap_N: domain 1 of 1, from 757 to 771: score 1.5, E = 4.8
*->LkkyvEyvErqkdei<-*
+kky+ y+++ k i
gi|1146096 757 IKKYKGYIDQMKQNI 771
ELK: domain 1 of 1, from 758 to 772: score 4.7, E = 2.3
*->rKYsgylssLreEfs<-*
+KY+gy+ ++++ +
gi|1146096 758 KKYKGYIDQMKQNIN 772
PCI: domain 1 of 1, from 761 to 775: score 1.5, E = 8.7
CS -EEEETTTTEEEE--
*->rgkIDqvngivvvsk<-*
+g+IDq+++ + +++
gi|1146096 761 KGYIDQMKQNINMKD 775
Pox_P4A: domain 1 of 1, from 761 to 780: score 2.4, E = 0.41
*->RpYFnsmKKNLNmnDgsavS<-*
++Y ++mK N Nm+D ++
gi|1146096 761 KGYIDQMKQNINMKDHLSDI 780
ANATO: domain 1 of 1, from 804 to 809: score 3.3, E = 0.27
CS HHHHHH
*->AFlqCC<-*
A+l+CC
gi|1146096 804 AQLHCC 809
PH: domain 1 of 1, from 828 to 912: score 4.7, E = 1.1
CS EEEETTEEEEEESTT SSEEEEEEGGCEEEEEECST
*->fvLfddvLlyykdkk............skpkgsipLsgiqvtkvedn
++Lf+d Ll ++++++ ++++++++ s+ L + ++ ++d+
gi|1146096 828 LFLFNDALLVSSRGTshtpfertskttYQFIASVALHRLLIENIPDS 874
CS TSTTEEEEEE TSEEEEEECSSHHHHHHHHHHHHHHHH
.krknvFeirt.dretlllqaeseeerkeWikaiqsair<-*
+ kn+F + + +++ ++e e+++ W++ +++ai+
gi|1146096 875 kYVKNAFILQGpKY-KWICATEIEDDKFLWLSVLRNAIK 912
TolA: domain 1 of 1, from 848 to 868: score 0.1, E = 4.7
CS XXXXXXXXXXXXXXXXXXXXXX
*->keqndklkrAiiISvvLHiiLi<-*
e+ +k + +i Sv+LH +Li
gi|1146096 848 -ERTSKTTYQFIASVALHRLLI 868
F-box: domain 2 of 2, from 849 to 869: score 1.0, E = 28
CS TT-HHHHHHHCT- HHH HHH
*->lVSkrwrslvdsl.lwk.kll<-*
++Sk+ ++++ s+ l++ +
gi|1146096 849 RTSKTTYQFIASVaLHRlLIE 869
Citrate_ly_lig: domain 1 of 1, from 852 to 858: score 0.5, E = 8.4
*->aTTlqYL<-*
+TT+q++
gi|1146096 852 KTTYQFI 858
//