hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 115358596.fa
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Query sequence: gi|115358596|ref|YP_775734.1|
Accession: [none]
Description: peptidoglycan-binding LysM [Burkholderia ambifaria AMMD]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
LysM LysM domain 23.4 8.5e-06 1
DUF2390 Protein of unknown function (DUF2390) 8.6 0.037 2
SSV1_ORF_D-335 ORF D-335-like protein 6.5 0.17 1
Peptidase_M16_C Peptidase M16 inactive domain 6.7 0.21 2
DUF1013 Protein of unknown function (DUF1013) 4.3 0.25 1
DUF1974 Domain of unknown function (DUF1974) 2.8 0.47 1
LR8 LR8 protein 5.3 0.52 1
Pro-kuma_activ Pro-kumamolisin, activation domain 5.6 0.62 1
DDE DDE superfamily endonuclease 3.5 1.2 1
DUF2125 Uncharacterized protein conserved in 1.1 1.4 1
PSCyt1 Planctomycete cytochrome C 3.7 1.4 1
PNPase Polyribonucleotide nucleotidyltransfe 2.0 1.4 1
GRASP55_65 GRASP55/65 family 2.9 1.5 1
Phage_tail_T Minor tail protein T 2.5 1.5 1
XPC-binding XPC-binding domain 4.7 1.8 1
DUF243 Domain of unknown function (DUF243) 1.5 1.8 1
Peptidase_M15 D-ala-D-ala dipeptidase 2.7 1.9 1
GumN GumN protein 2.8 2 1
Methyltransf_11 Methyltransferase domain 4.3 2 2
Type_III_YscX Type III secretion system YscX (type_ 2.7 2.1 1
MspA MspA 3.1 2.1 1
Apidaecin Apidaecin 3.0 2.1 1
Chlam_PMP Chlamydia polymorphic membrane protei 6.2 2.2 1
MCC-bdg_PDZ PDZ domain of MCC-2 bdg protein for U 4.2 2.3 1
HyaE Hydrogenase-1 expression protein HyaE 2.3 2.4 1
Pyr_redox Pyridine nucleotide-disulphide oxidor 3.3 2.6 1
ABM Antibiotic biosynthesis monooxygenase 4.4 2.6 1
EST1_DNA_bind Est1 DNA/RNA binding domain 3.1 2.8 1
DUF1112 Protein of unknown function (DUF1112) 1.9 2.9 1
Ribosomal_S3_N Ribosomal protein S3, N-terminal doma 2.8 3 1
Opi1 Transcription factor Opi1 1.4 3 1
VWA_N VWA N-terminal 1.8 3.1 1
DUF438 Family of unknown function (DUF438) 2.4 3.2 1
PGM_PMM_II Phosphoglucomutase/phosphomannomutase 2.1 3.2 1
MTP18 Mitochondrial 18 KDa protein (MTP18) 2.3 3.4 1
Leader_Thr Threonine leader peptide 4.4 3.5 1
DUF2550 Protein of unknown function (DUF2550) 2.8 3.8 1
Ribonuc_2-5A Ribonuclease 2-5A 2.2 3.9 1
Kinin Insect kinin peptide 3.5 4 1
DUF1970 Domain of unknown function (DUF1970) 0.4 4 1
Plasmid_RAQPRD Plasmid protein of unknown function ( 1.8 4 2
Mu-transpos_C Mu transposase, C-terminal 3.2 4.3 1
CARD Caspase recruitment domain 3.1 4.5 1
Glyco_hydro_79n Glycosyl hydrolase family 79, N-termi -0.1 4.6 1
Drf_FH3 Diaphanous FH3 Domain 0.8 4.6 1
RE_Eco47II Eco47II restriction endonuclease 1.5 4.7 1
DUF1990 Domain of unknown function (DUF1990) 1.9 4.7 1
EspF EspF protein repeat 1.4 4.9 1
DUF2164 Uncharacterized conserved protein (DU 3.0 4.9 1
DUF2190 Uncharacterized conserved protein (DU 2.1 5 1
Toxin_13 Neurotoxin B-IV-like protein 1.9 5.1 1
Cbl_N2 CBL proto-oncogene N-terminus, EF han 2.6 5.1 1
CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISP 0.5 5.1 1
MutS_IV MutS family domain IV 2.8 5.1 1
FTHFS Formate--tetrahydrofolate ligase -0.4 5.3 1
DUF2134 Predicted membrane protein (DUF2134) 1.9 5.4 1
Hydrolase haloacid dehalogenase-like hydrolase 1.5 5.4 1
GerE Bacterial regulatory proteins, luxR f 3.0 5.8 1
Oxidored_nitro Nitrogenase component 1 type Oxidored -0.7 5.8 1
YjeF_N YjeF-related protein N-terminus 1.0 5.8 1
Transposase_Tc5 Tc5 transposase 0.5 5.8 1
SRR1 SRR1 3.5 5.9 1
DUF952 Protein of unknown function (DUF952) 2.5 6.2 1
DUF526 Protein of unknown function (DUF526) 2.1 6.2 1
Type_III_YscP Type III secretion system (type_III_ 1.3 6.2 1
HrpB2 Bacterial type III secretion protein -0.3 6.3 1
Alpha_E1_glycop Alphavirus E1 glycoprotein 0.2 6.3 1
HisG ATP phosphoribosyltransferase 1.5 6.8 1
ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valin 0.6 6.8 1
DUF702 Domain of unknown function (DUF702) 0.5 6.8 1
GAF GAF domain 1.8 6.9 1
Morbilli_P Morbillivirus RNA polymerase alpha su 0.1 6.9 1
Pas_Saposin Pas factor saposin fold 2.0 7 1
SUR7 SUR7 protein 1.0 7 1
DUF494 Protein of unknown function (DUF494) 0.8 7.1 1
DUF2296 Predicted integral membrane metal-bin 2.2 7.2 1
PRCH Photosynthetic reaction centre, H-cha 0.8 7.2 1
PT PT repeat 2.5 7.3 1
tRNA-synt_2c tRNA synthetases class II (A) -0.3 7.3 1
Glyco_hydro_42M Beta-galactosidase trimerisation doma 0.5 7.3 1
DUF2036 Uncharacterized conserved protein (DU 0.6 7.6 1
Nha1_C Alkali metal cation/H+ antiporter Nha 1.0 7.7 1
BRK BRK domain 2.6 7.7 1
BicD Microtubule-associated protein Bicaud -1.8 7.9 1
DUF1175 Protein of unknown function (DUF1175) -0.1 7.9 1
Flagellin_N Bacterial flagellin N-terminus 1.6 8 1
DUF1094 Protein of unknown function (DUF1094) 1.6 8 1
NDUF_B6 NADH:ubiquinone oxidoreductase, NDUFB 0.6 8 1
DUF632 Protein of unknown function (DUF632) 0.1 8 1
RAG2 Recombination activating protein 2 -1.7 8.2 1
LEA_3 Late embryogenesis abundant protein 0.9 8.3 1
DUF1452 Protein of unknown function (DUF1452) 2.1 8.3 1
OpcA Outer membrane protein OpcA -0.7 8.4 1
Metallophos Calcineurin-like phosphoesterase 1.6 8.6 1
APS_kinase Adenylylsulphate kinase -0.0 8.6 1
Sipho_tail Siphovirus tail component protein -1.5 8.6 1
DUF124 Protein of unknown function DUF124 0.4 8.8 1
gpW gpW 1.6 9.2 1
Cytomega_TRL10 Cytomegalovirus TRL10 protein 0.3 9.2 1
Prog_receptor Progesterone receptor -2.5 9.3 1
PhyH Phytanoyl-CoA dioxygenase (PhyH) -0.3 9.4 1
Syntaxin Syntaxin 1.9 9.4 1
Phage_attach Phage Head-Tail Attachment -1.1 9.5 1
DUF1349 Protein of unknown function (DUF1349) 0.2 9.6 1
DUF1035 Protein of unknown function (DUF1035) 1.1 9.7 1
DUF1493 Protein of unknown function (DUF1493) 0.1 9.8 1
DUF2029 Protein of unknown function (DUF2029) 0.6 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Pyr_redox 1/1 34 41 .. 95 102 .] 3.3 2.6
HrpB2 1/1 61 78 .. 1 19 [. -0.3 6.3
Plasmid_RAQPRD 1/2 65 81 .. 1 17 [. 1.2 6.5
GAF 1/1 75 125 .. 1 62 [. 1.8 6.9
Peptidase_M16_C 1/2 80 118 .. 158 198 .] 0.2 15
DUF1974 1/1 95 111 .. 114 130 .. 2.8 0.47
Phage_attach 1/1 95 110 .. 1 16 [. -1.1 9.5
DUF702 1/1 101 109 .. 161 169 .] 0.5 6.8
DUF1013 1/1 107 122 .. 127 143 .] 4.3 0.25
MCC-bdg_PDZ 1/1 113 127 .. 55 69 .] 4.2 2.3
Toxin_13 1/1 118 134 .. 1 17 [. 1.9 5.1
BicD 1/1 126 139 .. 1 14 [. -1.8 7.9
Plasmid_RAQPRD 2/2 174 184 .. 1 11 [. 0.6 9.8
Morbilli_P 1/1 175 191 .. 267 283 .. 0.1 6.9
Syntaxin 1/1 216 257 .. 69 110 .] 1.9 9.4
CARD 1/1 239 263 .. 64 89 .] 3.1 4.5
MspA 1/1 305 324 .. 1 24 [. 3.1 2.1
APS_kinase 1/1 467 480 .. 149 162 .] -0.0 8.6
Phage_tail_T 1/1 486 492 .. 97 103 .] 2.5 1.5
DUF1493 1/1 561 568 .. 112 119 .] 0.1 9.8
Type_III_YscX 1/1 665 693 .. 80 114 .. 2.7 2.1
DUF1112 1/1 684 692 .. 230 238 .] 1.9 2.9
VWA_N 1/1 722 763 .. 1 49 [. 1.8 3.1
DUF2036 1/1 725 734 .. 1 10 [. 0.6 7.6
OpcA 1/1 753 773 .. 95 116 .. -0.7 8.4
DUF1035 1/1 835 850 .. 41 57 .. 1.1 9.7
DUF1990 1/1 911 942 .. 6 39 .. 1.9 4.7
SUR7 1/1 956 978 .. 188 210 .] 1.0 7
DUF2190 1/1 962 980 .. 87 107 .. 2.1 5
Cbl_N2 1/1 1106 1115 .. 77 86 .] 2.6 5.1
YjeF_N 1/1 1133 1143 .. 1 11 [. 1.0 5.8
Oxidored_nitro 1/1 1161 1171 .. 455 465 .] -0.7 5.8
ELFV_dehydrog 1/1 1165 1173 .. 270 278 .] 0.6 6.8
DUF1349 1/1 1209 1222 .. 168 181 .. 0.2 9.6
DUF2164 1/1 1309 1323 .. 62 81 .] 3.0 4.9
SSV1_ORF_D-335 1/1 1315 1328 .. 17 31 .. 6.5 0.17
Methyltransf_11 1/2 1564 1587 .. 1 28 [. 1.3 13
Kinin 1/1 1664 1671 .. 1 8 [] 3.5 4
gpW 1/1 1680 1687 .. 61 68 .] 1.6 9.2
LR8 1/1 1681 1691 .. 220 230 .] 5.3 0.52
DUF1175 1/1 1683 1692 .. 233 242 .] -0.1 7.9
XPC-binding 1/1 1739 1756 .. 35 59 .] 4.7 1.8
RAG2 1/1 1852 1869 .. 519 536 .] -1.7 8.2
Pas_Saposin 1/1 1864 1873 .. 67 76 .] 2.0 7
DUF2390 1/2 1880 1905 .. 34 59 .. 0.5 12
EspF 1/1 1936 1950 .. 33 47 .] 1.4 4.9
DUF243 1/1 1937 1970 .. 1 33 [. 1.5 1.8
DDE 1/1 2040 2050 .. 1 11 [. 3.5 1.2
DUF952 1/1 2045 2053 .. 1 9 [. 2.5 6.2
Prog_receptor 1/1 2052 2079 .. 319 346 .. -2.5 9.3
Ribosomal_S3_N 1/1 2072 2088 .. 50 71 .] 2.8 3
PSCyt1 1/1 2126 2134 .. 54 62 .] 3.7 1.4
Pro-kuma_activ 1/1 2168 2183 .. 46 61 .. 5.6 0.62
DUF124 1/1 2170 2184 .. 227 241 .] 0.4 8.8
PRCH 1/1 2198 2208 .. 135 145 .] 0.8 7.2
DUF1452 1/1 2221 2236 .. 1 17 [. 2.1 8.3
tRNA-synt_2c 1/1 2256 2267 .. 598 609 .] -0.3 7.3
Apidaecin 1/1 2285 2318 .. 1 28 [] 3.0 2.1
PT 1/1 2299 2321 .. 1 23 [. 2.5 7.3
Methyltransf_11 2/2 2350 2370 .. 76 97 .. 3.0 4.6
PGM_PMM_II 1/1 2351 2363 .. 108 120 .] 2.1 3.2
DUF1094 1/1 2381 2397 .. 81 97 .] 1.6 8
Peptidase_M15 1/1 2458 2490 .. 31 63 .. 2.7 1.9
Type_III_YscP 1/1 2502 2519 .. 1 25 [. 1.3 6.2
NDUF_B6 1/1 2636 2662 .. 129 155 .] 0.6 8
Alpha_E1_glycop 1/1 2658 2670 .. 1 13 [. 0.2 6.3
Glyco_hydro_79n 1/1 2665 2670 .. 351 356 .] -0.1 4.6
PNPase 1/1 2675 2681 .. 78 84 .] 2.0 1.4
RE_Eco47II 1/1 2741 2751 .. 222 232 .] 1.5 4.7
BRK 1/1 2828 2848 .. 1 20 [. 2.6 7.7
DUF2125 1/1 2886 2895 .. 356 365 .] 1.1 1.4
SRR1 1/1 2967 2983 .. 40 56 .] 3.5 5.9
DUF632 1/1 2974 2992 .. 329 347 .] 0.1 8
Chlam_PMP 1/1 2981 3004 .. 1 19 [] 6.2 2.2
Ribonuc_2-5A 1/1 2984 2998 .. 64 78 .. 2.2 3.9
Mu-transpos_C 1/1 3008 3020 .. 65 81 .] 3.2 4.3
DUF526 1/1 3088 3094 .. 64 70 .] 2.1 6.2
ABM 1/1 3099 3118 .. 44 65 .] 4.4 2.6
DUF2390 2/2 3102 3139 .. 38 75 .. 8.1 0.052
HyaE 1/1 3119 3130 .. 1 14 [. 2.3 2.4
MutS_IV 1/1 3126 3141 .. 1 16 [. 2.8 5.1
LEA_3 1/1 3276 3281 .. 1 6 [. 0.9 8.3
FTHFS 1/1 3281 3291 .. 547 557 .. -0.4 5.3
Hydrolase 1/1 3282 3346 .. 95 169 .. 1.5 5.4
Opi1 1/1 3321 3331 .. 1 11 [. 1.4 3
DUF494 1/1 3336 3347 .. 146 157 .] 0.8 7.1
DUF2550 1/1 3369 3388 .. 117 136 .] 2.8 3.8
Cytomega_TRL10 1/1 3408 3415 .. 1 9 [. 0.3 9.2
Sipho_tail 1/1 3417 3424 .. 684 691 .] -1.5 8.6
Drf_FH3 1/1 3447 3460 .. 1 14 [. 0.8 4.6
Glyco_hydro_42M 1/1 3448 3463 .. 215 231 .] 0.5 7.3
DUF2029 1/1 3475 3495 .. 179 199 .. 0.6 10
EST1_DNA_bind 1/1 3499 3507 .. 67 75 .] 3.1 2.8
Peptidase_M16_C 2/2 3528 3555 .. 172 198 .] 6.5 0.24
PhyH 1/1 3532 3557 .. 1 31 [. -0.3 9.4
DUF438 1/1 3539 3552 .. 42 56 .. 2.4 3.2
CRISPR_Cse1 1/1 3566 3581 .. 542 557 .] 0.5 5.1
Leader_Thr 1/1 3690 3708 .. 1 23 [] 4.4 3.5
MTP18 1/1 3751 3762 .. 176 187 .] 2.3 3.4
DUF2296 1/1 3753 3764 .. 1 12 [. 2.2 7.2
GumN 1/1 3764 3774 .. 276 286 .] 2.8 2
HisG 1/1 3814 3830 .. 171 189 .] 1.5 6.8
GerE 1/1 3904 3915 .. 47 58 .] 3.0 5.8
DUF1970 1/1 3909 3928 .. 98 117 .] 0.4 4
Transposase_Tc5 1/1 3956 3967 .. 1 13 [. 0.5 5.8
Nha1_C 1/1 3968 3973 .. 1 6 [. 1.0 7.7
DUF2134 1/1 3981 3998 .. 94 115 .] 1.9 5.4
Metallophos 1/1 4003 4117 .. 98 124 .] 1.6 8.6
GRASP55_65 1/1 4018 4042 .. 358 382 .] 2.9 1.5
LysM 1/1 4089 4158 .] 1 45 [] 23.4 8.5e-06
Flagellin_N 1/1 4119 4129 .. 1 11 [. 1.6 8
Alignments of top-scoring domains:
Pyr_redox: domain 1 of 1, from 34 to 41: score 3.3, E = 2.6
CS SEEEECSE
*->DlVlvAiG<-*
D+Vl+A+G
gi|1153585 34 DMVLMAVG 41
HrpB2: domain 1 of 1, from 61 to 78: score -0.3, E = 6.3
*->aagtaAaaPvapavpqeLv<-*
+gt++a+P++ + q+L+
gi|1153585 61 -NGTGGAPPAQTPEQQALA 78
Plasmid_RAQPRD: domain 1 of 2, from 65 to 81: score 1.2, E = 6.5
*->aaaAdaaaERerLaavl<-*
+a + ++E+++Laa++
gi|1153585 65 GAPPAQTPEQQALAAAQ 81
GAF: domain 1 of 1, from 75 to 125: score 1.8, E = 6.9
CS CHHHHHHHHHHHHHHHHTEEEEEEEEEEEETTTCEEEEEEEECCGGC
*->dleeilqtiveelrellgadrvaiyllladedglllelvagdglsdi
+++q+ +++l +l +a+ +a+ ++d+++++
gi|1153585 75 QALAAAQAETQRLLQLAQAEMAAL-------------KRLHDQGASQ 108
CS -HHCC EET SHHHHHH
plaar.lpl.gglvgev<-*
+ + ++ ++ +g v
gi|1153585 109 ADLDNqVKKaETAWGAV 125
Peptidase_M16_C: domain 1 of 2, from 80 to 118: score 0.2, E = 15
CS E ECCCCHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHH
*->a.tdpegenldeRvlelileeleklaeeGiteeelerakaql<-*
a+++++ +l + + ++ ++ l++l ++G ++++l+ +
gi|1153585 80 AqAETQ--RLLQ-LAQAEMAALKRLHDQGASQADLDNQVKKA 118
DUF1974: domain 1 of 1, from 95 to 111: score 2.8, E = 0.47
*->SAvLKRyeDeGrpeaDl<-*
+A+LKR +D+G +aDl
gi|1153585 95 MAALKRLHDQGASQADL 111
Phage_attach: domain 1 of 1, from 95 to 110: score -1.1, E = 9.5
*->MadfdNLFDeAisrAD<-*
Ma L D+ s+AD
gi|1153585 95 MAALKRLHDQGASQAD 110
DUF702: domain 1 of 1, from 101 to 109: score 0.5, E = 6.8
*->LYDQGpehq<-*
L+DQG ++
gi|1153585 101 LHDQGASQA 109
DUF1013: domain 1 of 1, from 107 to 122: score 4.3, E = 0.25
*->sQidLDaaVekkAakrr<-*
sQ+dLD V+k A+
gi|1153585 107 SQADLDNQVKK-AETAW 122
MCC-bdg_PDZ: domain 1 of 1, from 113 to 127: score 4.2, E = 2.3
*->ervkelysvllAlve<-*
++vk++++++ A+++
gi|1153585 113 NQVKKAETAWGAVQA 127
Toxin_13: domain 1 of 1, from 118 to 134: score 1.9, E = 5.1
CS --S--SSS-THHHHHHH
*->AsatWGaaYPACEnnCR<-*
A + WGa A En R
gi|1153585 118 AETAWGAVQAAVENQMR 134
BicD: domain 1 of 1, from 126 to 139: score -1.8, E = 7.9
*->gqaysnqrkvAkdG<-*
+ a+ nq +vA+dG
gi|1153585 126 QAAVENQMRVAADG 139
Plasmid_RAQPRD: domain 2 of 2, from 174 to 184: score 0.6, E = 9.8
*->aaaAdaaaERe<-*
a+ A++a+ER+
gi|1153585 174 AVSAESAPERA 184
Morbilli_P: domain 1 of 1, from 175 to 191: score 0.1, E = 6.9
*->AsAgNVrqsvsNAkmtQ<-*
+sA+++++ ++N+k Q
gi|1153585 175 VSAESAPERATNVKAFQ 191
Syntaxin: domain 1 of 1, from 216 to 257: score 1.9, E = 9.4
CS HHHHH HHHCHCHHHHHHHHHHHHHHHHHHHHH..HHHHHHHH
*->lkale.kanlseegsqlsssdtrirktqtsllsGlrkkfkevm<-*
+++++++ +++ ++++ s++dt +++++t+l+++lr ++ ++
gi|1153585 216 IRRADpDIGAQLRQTA-STADTNANNAYTALTTSLRHEYSTSA 257
CARD: domain 1 of 1, from 239 to 263: score 3.1, E = 4.5
CS CCHHHHHHHHHHHTT-HHHHHHHHCC
*->peafqiFleaLretgqphLadllels<-*
++a+ ++ +Lr+ ++ +a l+l+
gi|1153585 239 NNAYTALTTSLRH-EYSTSAATLRLD 263
MspA: domain 1 of 1, from 305 to 324: score 3.1, E = 2.1
*->PDGwevGpglTVgakDEsavvvPp<-*
+D+++ lT +DE+ +vv++
gi|1153585 305 GDDTA----LTYVTTDEQKQVVAS 324
APS_kinase: domain 1 of 1, from 467 to 480: score -0.0, E = 8.6
CS SS-SEEEETTTS-H
*->enPElvldttkqsv<-*
++PE++l t+q v
gi|1153585 467 AAPEVRLQYTQQQV 480
Phage_tail_T: domain 1 of 1, from 486 to 492: score 2.5, E = 1.5
*->GPDSepg<-*
GPDS+pg
gi|1153585 486 GPDSNPG 492
DUF1493: domain 1 of 1, from 561 to 568: score 0.1, E = 9.8
*->KAGRWLYD<-*
KAG+W D
gi|1153585 561 KAGKWMQD 568
Type_III_YscX: domain 1 of 1, from 665 to 693: score 2.7, E = 2.1
*->ldtTlaRLrsLLqesgsseLqaAaeLLestqeDeR<-*
+d+ +r++L + +++L + +LL ++q D+R
gi|1153585 665 FDG----VRQALSSGVDPALSK--SLLSKMQNDDR 693
DUF1112: domain 1 of 1, from 684 to 692: score 1.9, E = 2.9
*->LLskLqsrD<-*
LLsk+q++D
gi|1153585 684 LLSKMQNDD 692
VWA_N: domain 1 of 1, from 722 to 763: score 1.8, E = 3.1
*->AEnvLqeahefnedlkannfqYYnAkainelqesieedgnlaelgdk
A ++ + f++d++++ ++Y+++ ++n++++ + +++ +d+
gi|1153585 722 ANAS---YKLFQADPDKQLKAYFDDFQKNFGDK----SYTFTTGSDQ 761
pn<-*
++
gi|1153585 762 MT 763
DUF2036: domain 1 of 1, from 725 to 734: score 0.6, E = 7.6
*->dYkLLELded<-*
+YkL+++d+d
gi|1153585 725 SYKLFQADPD 734
OpcA: domain 1 of 1, from 753 to 773: score -0.7, E = 8.4
CS EEEEEEEETTEEEEEEEEEEEE
*->YtYtqtLsDsLnFRvGAGLGle<-*
Yt+t t sD + vGAGLGl+
gi|1153585 753 YTFT-TGSDQMTNFVGAGLGLQ 773
DUF1035: domain 1 of 1, from 835 to 850: score 1.1, E = 9.7
*->vGssnAtivsLVplFYl<-*
vG + +vsLVp++Y+
gi|1153585 835 VGG-DHAVVSLVPIYYV 850
DUF1990: domain 1 of 1, from 911 to 942: score 1.9, E = 4.7
*->GatraegatpleedsdlvpsGyrildvrvrlGsG<-*
Gat g++ +e+ + ++++y++l++ v+ G+G
gi|1153585 911 GAT--GGYSQYESIDAHKTEWYQHLEHYVEMGTG 942
SUR7: domain 1 of 1, from 956 to 978: score 1.0, E = 7
*->GikaslGtkmfAftWaAVaflLl<-*
Gi a +G +++++W+AV++ ++
gi|1153585 956 GIGAPVGGLLLGAAWTAVGAGMA 978
DUF2190: domain 1 of 1, from 962 to 980: score 2.1, E = 5
*->gNtliGvAwaaaAagsGaatv<-*
g+ l G+Aw+a++ag+ a++
gi|1153585 962 GGLLLGAAWTAVGAGM--AVG 980
Cbl_N2: domain 1 of 1, from 1106 to 1115: score 2.6, E = 5.1
CS GHHHHHHHHC
*->tLlrNWqtLa<-*
+L++NW+ L
gi|1153585 1106 SLVKNWDALS 1115
YjeF_N: domain 1 of 1, from 1133 to 1143: score 1.0, E = 5.8
*->lGipglvLMEr<-*
+G+ +++LMEr
gi|1153585 1133 MGLGSHTLMER 1143
Oxidored_nitro: domain 1 of 1, from 1161 to 1171: score -0.7, E = 5.8
CS HHHHHHHHHHH
*->lareianains<-*
+a+++ana+++
gi|1153585 1161 VAFDVANAMFA 1171
ELFV_dehydrog: domain 1 of 1, from 1165 to 1173: score 0.6, E = 6.8
CS HHHHHHHCS
*->VAdAMkarG<-*
VA+AM a+G
gi|1153585 1165 VANAMFANG 1173
DUF1349: domain 1 of 1, from 1209 to 1222: score 0.2, E = 9.6
*->SPereGfkVtFsef<-*
+P ++G+ ++Fs++
gi|1153585 1209 APADKGLRARFSDW 1222
DUF2164: domain 1 of 1, from 1309 to 1323: score 3.0, E = 4.9
*->kledLDieieedlyeLEkKp<-*
+led +e+ +y+LE
gi|1153585 1309 RLED----VEYYVYALE-DA 1323
SSV1_ORF_D-335: domain 1 of 1, from 1315 to 1328: score 6.5, E = 0.17
*->YYVYkIEkDneGkvr<-*
YYVY +E eG+vr
gi|1153585 1315 YYVYALED-AEGNVR 1328
Methyltransf_11: domain 1 of 2, from 1564 to 1587: score 1.3, E = 13
*->LDvGcGtGllaraLarrvgpgarvtGvD<-*
L + cG G + +La++ a+v GvD
gi|1153585 1564 LYA-CGAGSRVSPLAQL---LANVLGVD 1587
Kinin: domain 1 of 1, from 1664 to 1671: score 3.5, E = 4
*->sPaFnsWG<-*
+Pa n WG
gi|1153585 1664 RPASNQWG 1671
gpW: domain 1 of 1, from 1680 to 1687: score 1.6, E = 9.2
CS --------
*->RrPlGvrl<-*
R PlGv++
gi|1153585 1680 RVPLGVYV 1687
LR8: domain 1 of 1, from 1681 to 1691: score 5.3, E = 0.52
*->tsLglylrkmf<-*
++Lg+y+++m
gi|1153585 1681 VPLGVYVWRML 1691
DUF1175: domain 1 of 1, from 1683 to 1692: score -0.1, E = 7.9
*->LGVYRlnfLk<-*
LGVY ++ L+
gi|1153585 1683 LGVYVWRMLT 1692
XPC-binding: domain 1 of 1, from 1739 to 1756: score 4.7, E = 1.8
*->NPqLlqlIqqNqeeFlrLLnepaeg<-*
NP+Llq eF +L+++p+ g
gi|1153585 1739 NPELLQ-------EFADLIQAPVFG 1756
RAG2: domain 1 of 1, from 1852 to 1869: score -1.7, E = 8.2
*->tmkkltpaKKsFLRRLFe<-*
+m+ t a K F RRL e
gi|1153585 1852 IMNGKTIAPKEFARRLLE 1869
Pas_Saposin: domain 1 of 1, from 1864 to 1873: score 2.0, E = 7
*->avalLEdpey<-*
a++lLEdp y
gi|1153585 1864 ARRLLEDPAY 1873
DUF2390: domain 1 of 2, from 1880 to 1905: score 0.5, E = 12
*->LLlalWLaqrGlaldaerlqaLqaaa<-*
LL +++La+ G+++ +e + Lqa +
gi|1153585 1880 LLTGCYLASGGYSFAQELAYELQAPV 1905
EspF: domain 1 of 1, from 1936 to 1950: score 1.4, E = 4.9
*->PDvAqRLvqHLAEHG<-*
PDvA RL H+ E
gi|1153585 1936 PDVATRLYLHVPEAP 1950
DUF243: domain 1 of 1, from 1937 to 1970: score 1.5, E = 1.8
*->ivtKhfYvHvAPeeepeee.kekhllagppqKnY<-*
+v + Y Hv+ +++ +++ + gpp +++
gi|1153585 1937 DVATRLYLHVPEAPDASDPpTVFAQRGGPPSRPL 1970
DDE: domain 1 of 1, from 2040 to 2050: score 3.5, E = 1.2
*->ippediFNaDE<-*
i+p +iF+aDE
gi|1153585 2040 IEPRQIFTADE 2050
DUF952: domain 1 of 1, from 2045 to 2053: score 2.5, E = 6.2
*->IataseWea<-*
I+ta+eW+a
gi|1153585 2045 IFTADEWAA 2053
Prog_receptor: domain 1 of 1, from 2052 to 2079: score -2.5, E = 9.3
*->AaRTRQLLevesydgGaaagvaFAPPRs<-*
AaRT QL e e+ dg ++ PP s
gi|1153585 2052 AARTEQLAEAEADDGLSGKTQKIYPPTS 2079
Ribosomal_S3_N: domain 1 of 1, from 2072 to 2088: score 2.8, E = 3
*->nknlknaSnegisrieIeRkid<-*
+k ++++ sr++ Rki+
gi|1153585 2072 QKIYPPT-----SRVYTDRKIA 2088
PSCyt1: domain 1 of 1, from 2126 to 2134: score 3.7, E = 1.4
*->ddgeMPPpd<-*
d+++MPP+d
gi|1153585 2126 DTLLMPPDD 2134
Pro-kuma_activ: domain 1 of 1, from 2168 to 2183: score 5.6, E = 0.62
*->gkfLsreevaalfaPs<-*
g++L++++va+++aP+
gi|1153585 2168 GRPLTPDQVAERVAPH 2183
DUF124: domain 1 of 1, from 2170 to 2184: score 0.4, E = 8.8
CS SS-HHHHHHHHHHHT
*->srelsrfagrlapal<-*
++ +++ a+r+ap+l
gi|1153585 2170 PLTPDQVAERVAPHL 2184
PRCH: domain 1 of 1, from 2198 to 2208: score 0.8, E = 7.2
CS SSBSEEETTT-
*->GhnKIkPlrva<-*
G nK Plrva
gi|1153585 2198 GSNKHDPLRVA 2208
DUF1452: domain 1 of 1, from 2221 to 2236: score 2.1, E = 8.3
*->FdrFAsavarwaGrPla<-*
+++A+++++++GrP +
gi|1153585 2221 -AALAQRLSEITGRPIT 2236
tRNA-synt_2c: domain 1 of 1, from 2256 to 2267: score -0.3, E = 7.3
CS XXXXXXXXXXXX
*->GdtVtavvDedr<-*
G+ t++vD+dr
gi|1153585 2256 GTRLTGQVDRDR 2267
Apidaecin: domain 1 of 1, from 2285 to 2318: score 3.0, E = 2.1
*->lrakPEAEPG......nnRPvYiPqPRPPHPRlr<-*
l a P AEP ++++++ RP+ P PRP PR+
gi|1153585 2285 LPAGPHAEPTptttrtASRPIADPPPRPTVPRVA 2318
PT: domain 1 of 1, from 2299 to 2321: score 2.5, E = 7.3
CS --S--------SS-----SS-SS
*->qPTaqPTaqPTvqPTgqPtaqPT<-*
++++P a+P++ PT++ +a PT
gi|1153585 2299 RTASRPIADPPPRPTVPRVADPT 2321
Methyltransf_11: domain 2 of 2, from 2350 to 2370: score 3.0, E = 4.6
*->laedperalrEiaRVLKPGGkl<-*
l +d++ ++ +aRV PGG++
gi|1153585 2350 L-ADRPGVIDDAARVTQPGGTV 2370
PGM_PMM_II: domain 1 of 1, from 2351 to 2363: score 2.1, E = 3.2
CS SBEEEEETT--EE
*->GDRngivDelGnf<-*
+DR+g++D+ ++
gi|1153585 2351 ADRPGVIDDAARV 2363
DUF1094: domain 1 of 1, from 2381 to 2397: score 1.6, E = 8
*->GreaeeIaanLteAFde<-*
G e+ ++++ ++AFd
gi|1153585 2381 GPEPTRVIDDVMQAFDS 2397
Peptidase_M15: domain 1 of 1, from 2458 to 2490: score 2.7, E = 1.9
CS --TTB-SSS-EEEHHHHHHHHHHHHHHHTTTEE
*->PvdlyqvaRcLvhkeaaeaLakaaavaalaGqq<-*
P +l+++aR+++h e+ aL +a+ + + ++
gi|1153585 2458 PLALPEGARTVAHDELGHALDAAQTGPRNHAYV 2490
Type_III_YscP: domain 1 of 1, from 2502 to 2519: score 1.3, E = 6.2
*->tqGDllsPLHEPRYLagmeAastaq<-*
+qGDl+ + +++A++ta+
gi|1153585 2502 AQGDLT-------PQERVAASATAN 2519
NDUF_B6: domain 1 of 1, from 2636 to 2662: score 0.6, E = 8
*->prvfPGDtiletgeviptmsdyaerhh<-*
p+ +PG+ + + ++ ++ +d+++
gi|1153585 2636 PAAVPGQSGVPATPETSAVADTPQARA 2662
Alpha_E1_glycop: domain 1 of 1, from 2658 to 2670: score 0.2, E = 6.3
*->ppArAasfletla<-*
p ArAas l+tl+
gi|1153585 2658 PQARAASWLDTLG 2670
Glyco_hydro_79n: domain 1 of 1, from 2665 to 2670: score -0.1, E = 4.6
*->YLDqLG<-*
+LD+LG
gi|1153585 2665 WLDTLG 2670
PNPase: domain 1 of 1, from 2675 to 2681: score 2.0, E = 1.4
CS B-TTS-B
*->pRIDGRe<-*
+R+DGR+
gi|1153585 2675 TRVDGRH 2681
RE_Eco47II: domain 1 of 1, from 2741 to 2751: score 1.5, E = 4.7
*->LPiaiekivse<-*
+P+a++k+++
gi|1153585 2741 IPHALNKALEH 2751
BRK: domain 1 of 1, from 2828 to 2848: score 2.6, E = 7.7
*->sldgeeR.VpVinrktGkrLt<-*
++ge R ++V++ +tGk+L+
gi|1153585 2828 AVSGEQRwIHVVEDETGKVLG 2848
DUF2125: domain 1 of 1, from 2886 to 2895: score 1.1, E = 1.4
*->GpiPLGqiPp<-*
G iP+G+ P+
gi|1153585 2886 GGIPVGPSPR 2895
SRR1: domain 1 of 1, from 2967 to 2983: score 3.5, E = 5.9
*->YDPvFnalekefleelG<-*
+DP + +++k++l+ ++
gi|1153585 2967 VDPHLLPSDKSALNAVD 2983
DUF632: domain 1 of 1, from 2974 to 2992: score 0.1, E = 8
*->pdkevleAIksFasvvhai<-*
+dk +l+A++ ++v ++
gi|1153585 2974 SDKSALNAVDFSGNSVSHL 2992
Chlam_PMP: domain 1 of 1, from 2981 to 3004: score 6.2, E = 2.2
*->ditFsgNsa.....aggGGAiyas<-*
+++FsgNs+++ +a ++GA+ +
gi|1153585 2981 AVDFSGNSVshllsAIRNGALDGG 3004
Ribonuc_2-5A: domain 1 of 1, from 2984 to 2998: score 2.2, E = 3.9
*->YkgsSvrDLLRaiRN<-*
++g+Sv +LL aiRN
gi|1153585 2984 FSGNSVSHLLSAIRN 2998
Mu-transpos_C: domain 1 of 1, from 3008 to 3020: score 3.2, E = 4.3
*->VlVyrqdGNeerflceA<-*
++V+r dG ++eA
gi|1153585 3008 IYVFRTDG----AVAEA 3020
DUF526: domain 1 of 1, from 3088 to 3094: score 2.1, E = 6.2
*->RlaaLEa<-*
R+aaLEa
gi|1153585 3088 RVAALEA 3094
ABM: domain 1 of 1, from 3099 to 3118: score 4.4, E = 2.6
CS EEEEESSHHHHHHHHTSHHHHH
*->ilevWedeaAfeahlqsphfka<-*
++ +W+d++A + l+s+ f+a
gi|1153585 3099 LHDQWKDAEA--RSLNSAPFRA 3118
DUF2390: domain 2 of 2, from 3102 to 3139: score 8.1, E = 0.052
*->lWLaqrGlaldaerlqaLqaaaepWreevvqPLRalRr<-*
+W +++ ++l+ + ++aL a++++ +ev++ LR+lRr
gi|1153585 3102 QWKDAEARSLNSAPFRALAARTRHGYNEVLGDLRRLRR 3139
HyaE: domain 1 of 1, from 3119 to 3130: score 2.3, E = 2.4
*->LiqRLltrfGwpvV<-*
L++R tr+G+++V
gi|1153585 3119 LAAR--TRHGYNEV 3130
MutS_IV: domain 1 of 1, from 3126 to 3141: score 2.8, E = 5.1
*->gfdeeLDelrdlleel<-*
g++e L lr+l++++
gi|1153585 3126 GYNEVLGDLRRLRRNG 3141
LEA_3: domain 1 of 1, from 3276 to 3281: score 0.9, E = 8.3
*->MARSls<-*
MARS+s
gi|1153585 3276 MARSFS 3281
FTHFS: domain 1 of 1, from 3281 to 3291: score -0.4, E = 5.3
*->SlSdDPkllGa<-*
SlSdDP+l Ga
gi|1153585 3281 SLSDDPALMGA 3291
Hydrolase: domain 1 of 1, from 3282 to 3346: score 1.5, E = 5.4
CS EESSEH HHHHHHHHTTHG GTSEEEECHHHTEEGSTTSTTTSHHHH
*->lTggdr.naeallealgla.lfdvivdsdevggvgpivvgKPkpeif
l++++ + + + ++ g+ + + +vd + ++ ++ gK ++ f
gi|1153585 3282 LSDDPAlMGALVERYGGVMpVATLVVDPHSLA---AVL-GKAHDPDF 3324
CS HHHHHHHTSSGGGE.....EEEESSCHHHH
llalerlgvkpeevakpevlmVGDgvnDap<-*
l+a+++lg + +++ Dg+n+++
gi|1153585 3325 LRAVRALGDQKN-------AVF-DGANGMI 3346
Opi1: domain 1 of 1, from 3321 to 3331: score 1.4, E = 3
*->DvdvlraaSaL<-*
D+d+lra+ aL
gi|1153585 3321 DPDFLRAVRAL 3331
DUF494: domain 1 of 1, from 3336 to 3347: score 0.8, E = 7.1
*->eLlFdeeegllH<-*
+ +Fd ++g++H
gi|1153585 3336 NAVFDGANGMIH 3347
DUF2550: domain 1 of 1, from 3369 to 3388: score 2.8, E = 3.8
*->mdpdAlTGFlSWLESaPpgr<-*
+d++A TGF LE aP++
gi|1153585 3369 LDEAARTGFAIRLETAPSRA 3388
Cytomega_TRL10: domain 1 of 1, from 3408 to 3415: score 0.3, E = 9.2
*->mYprvmhav<-*
Y+rvm+a+
gi|1153585 3408 -YVRVMSAL 3415
Sipho_tail: domain 1 of 1, from 3417 to 3424: score -1.5, E = 8.6
*->sWntkpPd<-*
sW++++Pd
gi|1153585 3417 SWSNAHPD 3424
Drf_FH3: domain 1 of 1, from 3447 to 3460: score 0.8, E = 4.6
CS THHHHHHHHHHHHH
*->gGhelvleaiinfk<-*
gGhe++l+a+++ k
gi|1153585 3447 GGHEKLLRAVLERK 3460
Glyco_hydro_42M: domain 1 of 1, from 3448 to 3463: score 0.5, E = 7.3
CS HHHHHHHHHHHH.TT--
*->fldallekllaevagle<-*
++++ll+++l++ +gle
gi|1153585 3448 GHEKLLRAVLER-KGLE 3463
DUF2029: domain 1 of 1, from 3475 to 3495: score 0.6, E = 10
*->plafagNQSlrGvLaRLgged<-*
+++f+gNQ l+G+La L +e+
gi|1153585 3475 GADFVGNQDLTGALAKLIVEN 3495
EST1_DNA_bind: domain 1 of 1, from 3499 to 3507: score 3.1, E = 2.8
*->edipDrLvG<-*
+di++rL+G
gi|1153585 3499 PDIINRLHG 3507
Peptidase_M16_C: domain 2 of 2, from 3528 to 3555: score 6.5, E = 0.24
CS HHHHHHHHHHHHT T-SHHHHHHHHHHH
*->elileeleklaee.Giteeelerakaql<-*
+l+++e+e++ +G+t++e++++++ +
gi|1153585 3528 QLLFAEVERIGIAdGMTPAEVAALRQKI 3555
PhyH: domain 1 of 1, from 3532 to 3557: score -0.3, E = 9.4
CS HHHHHHSEEEETT..-S-HHHHHHHHHHHHH
*->affredGylviegErflspeevaalraeaer<-*
a+ ++ + i + ++p+evaalr+ +++
gi|1153585 3532 AEVER---IGIAD--GMTPAEVAALRQKIYE 3557
DUF438: domain 1 of 1, from 3539 to 3552: score 2.4, E = 3.2
*->iaeGgmppeEiqkLC<-*
ia+G m+p+E++ L+
gi|1153585 3539 IADG-MTPAEVAALR 3552
CRISPR_Cse1: domain 1 of 1, from 3566 to 3581: score 0.5, E = 5.1
*->tArkalrrlAlrlFda<-*
+Arka ++A +l++a
gi|1153585 3566 QARKATIEHAKQLWEA 3581
Leader_Thr: domain 1 of 1, from 3690 to 3708: score 4.4, E = 3.5
*->mkrislnttiittieittGyGAG<-*
+ri+ it ++t G GAG
gi|1153585 3690 -RRIA---GDITAATLTGGAGAG 3708
MTP18: domain 1 of 1, from 3751 to 3762: score 2.3, E = 3.4
*->pypFDepVEeav<-*
p +FD+ V+++v
gi|1153585 3751 PRVFDRVVDRLV 3762
DUF2296: domain 1 of 1, from 3753 to 3764: score 2.2, E = 7.2
*->wyDRilDiLvGe<-*
++DR++D Lv++
gi|1153585 3753 VFDRVVDRLVRG 3764
GumN: domain 1 of 1, from 3764 to 3774: score 2.8, E = 2
*->GvldlLRarGy<-*
G++++L+a G+
gi|1153585 3764 GLQAQLKANGF 3774
HisG: domain 1 of 1, from 3814 to 3830: score 1.5, E = 6.8
CS HCHH.HHHHHHHHHHHHCH
*->ekedlelidelvtrLegVi<-*
++++ + ++++++++gV+
gi|1153585 3814 HTKA--IAADMLAQMQGVV 3830
GerE: domain 1 of 1, from 3904 to 3915: score 3.0, E = 5.8
CS T-SSHHHHHHHH
*->nvhsrvelirla<-*
n+ +r +l+r a
gi|1153585 3904 NAENRSQLARIA 3915
DUF1970: domain 1 of 1, from 3909 to 3928: score 0.4, E = 4
*->sqLnnYAesLnDYLAsqAGv<-*
sqL A++ DYL s +
gi|1153585 3909 SQLARIASATGDYLTSAVSI 3928
Transposase_Tc5: domain 1 of 1, from 3956 to 3967: score 0.5, E = 5.8
*->ifeLrkkFPdplp<-*
+ L+ +FP+ +p
gi|1153585 3956 -GRLHSHFPNATP 3967
Nha1_C: domain 1 of 1, from 3968 to 3973: score 1.0, E = 7.7
*->WMqRLP<-*
WM+RLP
gi|1153585 3968 WMERLP 3973
DUF2134: domain 1 of 1, from 3981 to 3998: score 1.9, E = 5.4
*->agilGilfGlppsrtlsAtAtA<-*
++i+Gi+ ++ +l ++AtA
gi|1153585 3981 VAIFGIM----QGINLYTSATA 3998
Metallophos: domain 1 of 1, from 4003 to 4117: score 1.6, E = 8.6
CS SSSSSCC
*->Hgplsps........................................
H p+ +s+ +++++ + + ++ + ++++ + + ++ + ++++
gi|1153585 4003 HKPPGSSpqpsgsnagtpapgasfapspgatsapaqpsasaapspsa 4049
CS HHH
...............................................lee
+ +++ + + + +++ ++ + + +++++ + + + +++l+
gi|1153585 4050 saspsasatstagaqpssapsqptqtptnspsptptpltvnvvagdsLWT 4099
CS HHH TTSSEEEEESSSSE
llk.ngvdlvirGHtHvp<-*
++++++ l++++H+ +
gi|1153585 4100 IAErHEGSLLAAAHVPAD 4117
GRASP55_65: domain 1 of 1, from 4018 to 4042: score 2.9, E = 1.5
*->sasqttyspPsaPvsvqAtadesas<-*
+ ++++ s++++P+++ A a++sas
gi|1153585 4018 GTPAPGASFAPSPGATSAPAQPSAS 4042
LysM: domain 1 of 1, from 4089 to 4158: score 23.4, E = 8.5e-06
CS EE--TT--HHHHHHHT TS-IIII
*->YtVkkGDTLwsIArry........................gvsvseL
+ V GD+Lw IA r++++ + + +++++ +++++ +v ++e+
gi|1153585 4089 VNVVAGDSLWTIAERHegsllaaahvpadeqqrmsdgqriNVALNEI 4135
CS IITS-TT-SS. .--TT-EEEET
aelNpgLsspn.tlyvGQvLkiP<-*
++lN++L+++ +++ +GQ+ ++
gi|1153585 4136 LQLNRNLAGNPgEIAPGQQVIVG 4158
Flagellin_N: domain 1 of 1, from 4119 to 4129: score 1.6, E = 8
CS HHHHTS--TTT
*->qeRLSSGlRIN<-*
q+R+S G RIN
gi|1153585 4119 QQRMSDGQRIN 4129
//