hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 115493789.fa
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Query sequence: gi|115493789|gb|ABI98401.1|
Accession: [none]
Description: lung specific F-box and DH domain containing protein [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RhoGEF RhoGEF domain 116.3 4.7e-34 1
F-box F-box domain 30.3 1.2e-07 2
PsbI Photosystem II reaction centre I prot 8.7 0.098 1
FdhD-NarQ FdhD/NarQ family 6.4 0.22 1
DUF2227 Uncharacterized metal-binding protein 4.7 0.25 1
ANATO Anaphylotoxin-like domain 3.3 0.27 1
NikR_C NikR C terminal nickel binding domain 6.4 0.42 1
SMI1_KNR4 SMI1 / KNR4 family 5.6 0.47 1
Stb3 Putative Sin3 binding protein 4.5 0.64 1
CDC73 RNA pol II accessory factor, Cdc73 fa 3.3 0.87 1
Radical_SAM_N Radical SAM N-terminal 2.8 1 1
PH PH domain 4.7 1.1 1
DUF509 Protein of unknown function (DUF509) 3.7 1.1 1
ELK ELK domain 5.7 1.2 1
DUF444 Protein of unknown function (DUF444) 1.8 2.2 1
Tfb2 Transcription factor Tfb2 -1.7 2.5 1
ZipA_C ZipA, C-terminal FtsZ-binding domain 3.4 2.6 1
RPN7 26S proteasome subunit RPN7 2.4 3.4 1
Baculo_helicase Baculovirus DNA helicase -1.4 3.7 1
DUF1284 Protein of unknown function (DUF1284) 1.2 4.5 1
TolA TolA protein 0.1 4.7 1
Jnk-SapK_ap_N JNK_SAPK-associated protein-1 1.5 4.8 1
TraI_2 Putative helicase 0.6 4.8 1
PAAD_DAPIN PAAD/DAPIN/Pyrin domain 3.2 4.8 1
Herpes_U5 Herpesvirus U5-like family 0.8 4.8 1
Vps35 Vacuolar protein sorting-associated p -0.5 5.2 1
Phospholip_A2_1 Phospholipase A2 1.8 5.4 1
SfsA Sugar fermentation stimulation protei 1.1 5.5 1
PP1_inhibitor PKC-activated protein phosphatase-1 i 0.2 5.5 1
DASH_Dad1 DASH complex subunit Dad1 1.9 5.5 1
GerE Bacterial regulatory proteins, luxR f 3.0 5.6 1
RteC RteC protein 1.1 5.8 1
Mgm101p Mitochondrial genome maintenance MGM1 -1.0 6.3 1
DUF373 Domain of unknown function (DUF373) -0.9 7.4 1
PCI PCI domain 1.7 7.6 1
Citrate_ly_lig Citrate lyase ligase C-terminal domai 0.5 8.4 1
Peptidase_M74 Penicillin-insensitive murein endopep -0.2 8.4 1
TIP120 TATA-binding protein interacting (TIP 0.5 8.7 1
LON ATP-dependent protease La (LON) domai 0.0 9.4 1
DUF1374 Protein of unknown function (DUF1374) 2.3 9.7 1
DUF143 Domain of unknown function DUF143 -0.6 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PsbI 1/1 1 25 [. 1 25 [. 8.7 0.098
Baculo_helicase 1/1 5 17 .. 1271 1283 .] -1.4 3.7
F-box 1/2 7 54 .. 1 46 [] 29.3 2.4e-07
Mgm101p 1/1 34 40 .. 240 246 .] -1.0 6.3
DUF1284 1/1 45 54 .. 106 115 .] 1.2 4.5
GerE 1/1 83 91 .. 1 9 [. 3.0 5.6
TraI_2 1/1 97 131 .. 1 35 [. 0.6 4.8
ZipA_C 1/1 102 121 .. 112 131 .] 3.4 2.6
Herpes_U5 1/1 123 141 .. 531 551 .] 0.8 4.8
DUF509 1/1 161 171 .. 142 152 .] 3.7 1.1
FdhD-NarQ 1/1 217 242 .. 193 217 .. 6.4 0.22
Radical_SAM_N 1/1 227 237 .. 344 354 .] 2.8 1
SfsA 1/1 236 264 .. 196 223 .] 1.1 5.5
DUF373 1/1 240 264 .. 132 156 .. -0.9 7.4
NikR_C 1/1 240 251 .. 1 12 [. 6.4 0.42
DUF143 1/1 256 272 .. 1 17 [. -0.6 9.8
Peptidase_M74 1/1 270 278 .. 1 9 [. -0.2 8.4
CDC73 1/1 298 315 .. 297 314 .] 3.3 0.87
DUF2227 1/1 337 373 .. 155 189 .. 4.7 0.25
SMI1_KNR4 1/1 382 397 .. 127 142 .] 5.6 0.47
DASH_Dad1 1/1 388 397 .. 68 77 .] 1.9 5.5
Tfb2 1/1 393 407 .. 1 15 [. -1.7 2.5
Vps35 1/1 393 407 .. 1 15 [. -0.5 5.2
DUF1374 1/1 398 412 .. 1 15 [. 2.3 9.7
PAAD_DAPIN 1/1 441 456 .. 1 16 [. 3.2 4.8
PP1_inhibitor 1/1 484 508 .. 75 99 .. 0.2 5.5
LON 1/1 488 508 .. 209 229 .] 0.0 9.4
RhoGEF 1/1 501 684 .. 1 207 [] 116.3 4.7e-34
RteC 1/1 559 570 .. 218 229 .. 1.1 5.8
Phospholip_A2_1 1/1 584 608 .. 100 127 .] 1.8 5.4
RPN7 1/1 594 612 .. 85 103 .. 2.4 3.4
DUF444 1/1 613 624 .. 446 457 .] 1.8 2.2
Stb3 1/1 626 638 .. 1 16 [. 4.5 0.64
TIP120 1/1 673 688 .. 182 197 .] 0.5 8.7
Jnk-SapK_ap_N 1/1 675 689 .. 145 159 .] 1.5 4.8
ELK 1/1 676 690 .. 8 22 .] 5.7 1.2
PCI 1/1 679 693 .. 121 135 .] 1.7 7.6
ANATO 1/1 722 727 .. 33 38 .] 3.3 0.27
PH 1/1 746 830 .. 21 92 .] 4.7 1.1
TolA 1/1 766 786 .. 1 22 [. 0.1 4.7
F-box 2/2 767 787 .. 28 46 .] 1.0 28
Citrate_ly_lig 1/1 770 776 .. 184 190 .] 0.5 8.4
Alignments of top-scoring domains:
PsbI: domain 1 of 1, from 1 to 25: score 8.7, E = 0.098
*->mltLkifvYavvilFvsLFiFGfLs<-*
m + k+ +v+ F+sL+iF fLs
gi|1154937 1 MQVAKVDFSTVLPRFISLYIFSFLS 25
Baculo_helicase: domain 1 of 1, from 5 to 17: score -1.4, E = 3.7
*->kkDFntnvPkFKc<-*
k DF t+ P+F++
gi|1154937 5 KVDFSTVLPRFIS 17
F-box: domain 1 of 2, from 7 to 54: score 29.3, E = 2.4e-07
CS -HHHHS-HHHHHHHHTTS-HHHHHHHTTT-HHHHHHHCT- HHH HH
*->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
+ LP + l I+s+L+pkdl+++++VS+ w+ l + lw +k+
gi|1154937 7 DFSTVLPRFISLYIFSFLSPKDLCAAAQVSWPWKFLTEQDcLWMpKC 53
CS H
l<-*
gi|1154937 54 V 54
Mgm101p: domain 1 of 1, from 34 to 40: score -1.0, E = 6.3
*->qveYPYK<-*
qv+ P+K
gi|1154937 34 QVSWPWK 40
DUF1284: domain 1 of 1, from 45 to 54: score 1.2, E = 4.5
*->ggCeWlelGy<-*
++C W+++++
gi|1154937 45 QDCLWMPKCV 54
GerE: domain 1 of 1, from 83 to 91: score 3.0, E = 5.6
CS --SS-HHHH
*->ldsLspREr<-*
ld+L+pRE+
gi|1154937 83 LDWLTPREA 91
TraI_2: domain 1 of 1, from 97 to 131: score 0.6, E = 4.8
*->GltqPaavseqlLltprRqeLiekIwqrlslsrad<-*
l +P++ +e lL + r L +Iw+ +l++++
gi|1154937 97 TLNEPKTEDEELLERQREKCLRKRIWEKIALRKKE 131
ZipA_C: domain 1 of 1, from 102 to 121: score 3.4, E = 2.6
CS EETTSSB--HHHHHHHHHHH
*->LDeqRniltaQrieaYrdri<-*
++e ++l +Qr++ r+ri
gi|1154937 102 KTEDEELLERQREKCLRKRI 121
Herpes_U5: domain 1 of 1, from 123 to 141: score 0.8, E = 4.8
*->eeravrqkleslrkrllprvy<-*
e +a+r+k +l+k ++p+v
gi|1154937 123 EKIALRKK--ELFKVRPPWVS 141
DUF509: domain 1 of 1, from 161 to 171: score 3.7, E = 1.1
CS ...HH------
*->VlErvALvEav<-*
V+Erv+L Ea+
gi|1154937 161 VRERVGLHEAL 171
FdhD-NarQ: domain 1 of 1, from 217 to 242: score 6.4, E = 0.22
*->lrksfllvSGRiS.semvqKaaraGv<-*
lr f l S+Ri+ +emv+ +++aGv
gi|1154937 217 LRPHFMLISSRIPaYEMVMESVKAGV 242
Radical_SAM_N: domain 1 of 1, from 227 to 237: score 2.8, E = 1
*->kIPAyemIKfS<-*
+IPAyem+ S
gi|1154937 227 RIPAYEMVMES 237
SfsA: domain 1 of 1, from 236 to 264: score 1.1, E = 5.5
*->eAleaGVevlvyrvkvdlee.lrlvrpls<-*
e+++aGV ++vy+ +v+le l l++++
gi|1154937 236 ESVKAGVVSVVYEHSVTLESlLYLIEKAL 264
DUF373: domain 1 of 1, from 240 to 264: score -0.9, E = 7.4
*->eavkrVIVrQsegiEStYYlIakyL<-*
++v +V+ ++s ++ES YlI k+L
gi|1154937 240 AGVVSVVYEHSVTLESLLYLIEKAL 264
NikR_C: domain 1 of 1, from 240 to 251: score 6.4, E = 0.42
CS EEEEEEEEETTS
*->vGtitlVYDHhk<-*
+G++++VY H++
gi|1154937 240 AGVVSVVYEHSV 251
DUF143: domain 1 of 1, from 256 to 272: score -0.6, E = 9.8
*->llelivealdDkKAeDI<-*
ll li +ald KA+ I
gi|1154937 256 LLYLIEKALDGQKAQSI 272
Peptidase_M74: domain 1 of 1, from 270 to 278: score -0.2, E = 8.4
*->qSIGsYanG<-*
qSIG ++ G
gi|1154937 270 QSIGIFSDG 278
CDC73: domain 1 of 1, from 298 to 315: score 3.3, E = 0.87
*->ravvsqfWetLEkfvrkr<-*
r+ v+ fWe+L +v+
gi|1154937 298 RPEVRDFWEKLGSYVATE 315
DUF2227: domain 1 of 1, from 337 to 373: score 4.7, E = 0.25
*->lqshpeellafllA..GLelGawlHsIaDwvvsawkr<-*
l++ ++++++f+ A++G +G+ H+++Dw++s w +
gi|1154937 337 LSQLSQLTGTFFTAptGIATGSYQHILSDWLGSQWGK 373
SMI1_KNR4: domain 1 of 1, from 382 to 397: score 5.6, E = 0.47
*->deivvvAdSFeefLek<-*
+++ + ++SF++fLe+
gi|1154937 382 ESKLQTWSSFTDFLEE 397
DASH_Dad1: domain 1 of 1, from 388 to 397: score 1.9, E = 5.5
*->WkhFynglne<-*
W+ F ++l+e
gi|1154937 388 WSSFTDFLEE 397
Tfb2: domain 1 of 1, from 393 to 407: score -1.7, E = 2.5
*->dFLetipspvlqRLY<-*
dFLe+ + v+ LY
gi|1154937 393 DFLEETLKTVKKQLY 407
Vps35: domain 1 of 1, from 393 to 407: score -0.5, E = 5.2
*->klLeeAiavVkqQsf<-*
++Lee + Vk+Q +
gi|1154937 393 DFLEETLKTVKKQLY 407
DUF1374: domain 1 of 1, from 398 to 412: score 2.3, E = 9.7
*->efeeLksildkFFed<-*
++++k l++FF++
gi|1154937 398 TLKTVKKQLYPFFKE 412
PAAD_DAPIN: domain 1 of 1, from 441 to 456: score 3.2, E = 4.8
CS HHHHHHHHHHHS-HHH
*->krilLlkyLEeLndee<-*
+ + L ++L+eL++e+
gi|1154937 441 TAQALADGLMELSKED 456
PP1_inhibitor: domain 1 of 1, from 484 to 508: score 0.2, E = 5.5
CS SHHHHHHTSSTSCHHHHHHHHHHCC
*->vniDELLELesEEERsRKiqGLLks<-*
+n++ +L +s E R+R ++ LL+s
gi|1154937 484 INLERILQKDSAEKRARVVRELLQS 508
LON: domain 1 of 1, from 488 to 508: score 0.0, E = 9.4
*->elLEtldvkeRLekllelLek<-*
++L+ ++ ++R + + elL++
gi|1154937 488 RILQKDSAEKRARVVRELLQS 508
RhoGEF: domain 1 of 1, from 501 to 684: score 116.3, E = 4.7e-34
*->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
v++Ell++E+kYv+ Lei+++vy +pL++a +s +++L++ i++iF
gi|1154937 501 VVRELLQSERKYVQILEIVRDVYVAPLKAALSSNRAILSAANIQIIF 547
sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk
+i i++++r+FL+ L +r++++ ++a ++G ++ ++
gi|1154937 548 CDILQILSLNRQFLD-NLRDRLQEW-----------DPAHCVGEIVTKF- 584
aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd
++l+ Y+ + +n+p+ +++ek +++ +p+F+ fl++ + t
gi|1154937 585 GSQLNTYTNFFNNYPVILKTIEK--CREMIPAFRTFLKRHDKTIVTK--- 629
davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda
l+L+ LLl+P R Y LL +htp+ ++ ++ dL a+d+
gi|1154937 630 ---MLSLPELLLYPSRRFEEYLNLLYAVRLHTPA--EHVDRGDLTTAIDQ 674
lqdlaksiNe<-*
++ +i++
gi|1154937 675 IKKYKGYIDQ 684
RteC: domain 1 of 1, from 559 to 570: score 1.1, E = 5.8
*->yFLDrLkekLlK<-*
+FLD+L+++L++
gi|1154937 559 QFLDNLRDRLQE 570
Phospholip_A2_1: domain 1 of 1, from 584 to 608: score 1.8, E = 5.4
CS HHHTG-GG--GGGBTCGGCGSHSSHHHT
*->FarnlpnTYNkkywaYpsnicteeserC<-*
F l nTY + +Yp + t e+C
gi|1154937 584 FGSQL-NTYTNFFNNYPVILKT--IEKC 608
RPN7: domain 1 of 1, from 594 to 612: score 2.4, E = 3.4
*->ffnDwdlVskyiekAksli<-*
ffn++++++k iek++++i
gi|1154937 594 FFNNYPVILKTIEKCREMI 612
DUF444: domain 1 of 1, from 613 to 624: score 1.8, E = 2.2
*->pVfrelFqkeea<-*
p+fr+++++ ++
gi|1154937 613 PAFRTFLKRHDK 624
Stb3: domain 1 of 1, from 626 to 638: score 4.5, E = 0.64
*->iTPamLaKfhLPelLl<-*
i+ +mL+ LPelLl
gi|1154937 626 IVTKMLS---LPELLL 638
TIP120: domain 1 of 1, from 673 to 688: score 0.5, E = 8.7
*->dknpvwsefvsqikkn<-*
d++ +++ +++q+k n
gi|1154937 673 DQIKKYKGYIDQMKQN 688
Jnk-SapK_ap_N: domain 1 of 1, from 675 to 689: score 1.5, E = 4.8
*->LkkyvEyvErqkdei<-*
+kky+ y+++ k i
gi|1154937 675 IKKYKGYIDQMKQNI 689
ELK: domain 1 of 1, from 676 to 690: score 5.7, E = 1.2
*->rKYsgylssLreEfs<-*
+KY+gy+ ++++ +
gi|1154937 676 KKYKGYIDQMKQNIT 690
PCI: domain 1 of 1, from 679 to 693: score 1.7, E = 7.6
CS -EEEETTTTEEEE--
*->rgkIDqvngivvvsk<-*
+g+IDq+++ +++++
gi|1154937 679 KGYIDQMKQNITMKD 693
ANATO: domain 1 of 1, from 722 to 727: score 3.3, E = 0.27
CS HHHHHH
*->AFlqCC<-*
A+l+CC
gi|1154937 722 AQLHCC 727
PH: domain 1 of 1, from 746 to 830: score 4.7, E = 1.1
CS EEEETTEEEEEESTT SSEEEEEEGGCEEEEEECST
*->fvLfddvLlyykdkk............skpkgsipLsgiqvtkvedn
++Lf+d Ll ++++++ ++++++++ s+ L + ++ ++d+
gi|1154937 746 LFLFNDALLVSSRGTshtpfertskttYQFIASVALHRLLIENIPDS 792
CS TSTTEEEEEE TSEEEEEECSSHHHHHHHHHHHHHHHH
.krknvFeirt.dretlllqaeseeerkeWikaiqsair<-*
+ kn+F + + +++ ++e e+++ W++ +++ai+
gi|1154937 793 kYVKNAFILQGpKY-KWICATEIEDDKFLWLSVLRNAIK 830
TolA: domain 1 of 1, from 766 to 786: score 0.1, E = 4.7
CS XXXXXXXXXXXXXXXXXXXXXX
*->keqndklkrAiiISvvLHiiLi<-*
e+ +k + +i Sv+LH +Li
gi|1154937 766 -ERTSKTTYQFIASVALHRLLI 786
F-box: domain 2 of 2, from 767 to 787: score 1.0, E = 28
CS TT-HHHHHHHCT- HHH HHH
*->lVSkrwrslvdsl.lwk.kll<-*
++Sk+ ++++ s+ l++ +
gi|1154937 767 RTSKTTYQFIASVaLHRlLIE 787
Citrate_ly_lig: domain 1 of 1, from 770 to 776: score 0.5, E = 8.4
*->aTTlqYL<-*
+TT+q++
gi|1154937 770 KTTYQFI 776
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