hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            115920118.fa
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Query sequence: gi|115920118|ref|XP_001177035.1|
Accession:      [none]
Description:    PREDICTED: similar to NELF protein [Strongylocentrotus purpuratus]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
TIR             TIR domain                                2.6        1.7   1
FA_desaturase_2 Fatty acid desaturase                    -0.2        6.6   1
Mtr2            Nuclear pore RNA shuttling protein Mt     0.3        7.5   1
B56             Protein phosphatase 2A regulatory B s    -0.6        8.6   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
TIR               1/1      19    47 ..   118   150 .]     2.6      1.7
B56               1/1      30    49 ..   395   415 .]    -0.6      8.6
Mtr2              1/1      53    60 ..   201   208 .]     0.3      7.5
FA_desaturase_2   1/1      68    94 ..     1    27 [.    -0.2      6.6

Alignments of top-scoring domains:
TIR: domain 1 of 1, from 19 to 47: score 2.6, E = 1.7
                CS    HHHHCT-SEE--SSG.....GGCCHHHHHHHHH
                   *->FgkaflktlkwsgdktersqsdrikfWkkalya<-*
                      ++k++l+t+k +++++     d+ +fWk++ +
  gi|1159201    19    LKKKVLTTAKLKKENEA----DQVRFWKELGKM    47

B56: domain 1 of 1, from 30 to 49: score -0.6, E = 8.6
                   *->ekekekkrektWkklieeaAs<-*
                      +ke+e++  ++Wk+ + ++ s
  gi|1159201    30    KKENEADQVRFWKE-LGKMMS    49

Mtr2: domain 1 of 1, from 53 to 60: score 0.3, E = 7.5
                CS    --------
                   *->PeDSlikI<-*
                      PeD++i I
  gi|1159201    53    PEDTVIHI    60

FA_desaturase_2: domain 1 of 1, from 68 to 94: score -0.2, E = 6.6
                   *->ppekieifksLegwaeknllpllkpve<-*
                          +++f++Le + + n ++++ p+e
  gi|1159201    68    SESGLQLFDDLEDLMRPNFVRFESPLE    94

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