hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 115920120.fa
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Query sequence: gi|115920120|ref|XP_001177167.1|
Accession: [none]
Description: PREDICTED: similar to Jacob [Strongylocentrotus purpuratus]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF2220 Uncharacterized protein conserved in 4.5 0.27 1
GN3L_Grn1 GNL3L/Grn1 putative GTPase 6.5 0.34 1
Abi_2 Abi-like protein 3.0 1 1
IQ IQ calmodulin-binding motif 6.0 1.4 1
CDI Cyclin-dependent kinase inhibitor 4.3 2.7 1
Sec15 Exocyst complex subunit Sec15-like 1.0 3.6 1
DUF471 Family of unknown function (DUF471) 2.3 5.6 1
IMPDH IMP dehydrogenase / GMP reductase dom 0.5 6.5 1
Psf3 Partner of SLD five, PSF3 0.4 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Sec15 1/1 6 23 .. 378 395 .] 1.0 3.6
IQ 1/1 96 110 .. 1 15 [. 6.0 1.4
DUF2220 1/1 101 116 .. 1 16 [. 4.5 0.27
IMPDH 1/1 104 120 .. 355 371 .] 0.5 6.5
Abi_2 1/1 143 158 .. 1 17 [. 3.0 1
GN3L_Grn1 1/1 147 176 .. 51 80 .] 6.5 0.34
DUF471 1/1 162 181 .. 1 18 [. 2.3 5.6
Psf3 1/1 183 197 .. 174 188 .] 0.4 9.7
CDI 1/1 190 212 .. 1 23 [. 4.3 2.7
Alignments of top-scoring domains:
Sec15: domain 1 of 1, from 6 to 23: score 1.0, E = 3.6
CS XXXXXXXXXXXXXXXXXX
*->dskkllstvakqlralei<-*
++kk+ stv k+lra +
gi|1159201 6 SKKKPESTVQKKLRAAAA 23
IQ: domain 1 of 1, from 96 to 110: score 6.0, E = 1.4
CS HHHCHHHHHHHHHHH
*->rraaikIQaawRGyl<-*
+ ++kIQ+++R+++
gi|1159201 96 FDKVTKIQRQFRRHR 110
DUF2220: domain 1 of 1, from 101 to 116: score 4.5, E = 0.27
*->qvrrlWdshrgslLaa<-*
+++r++++hr+s+L++
gi|1159201 101 KIQRQFRRHRSSILSE 116
IMPDH: domain 1 of 1, from 104 to 120: score 0.5, E = 6.5
CS EEEEEESHHHHCHHSSS
RF xxxxxxxxxxxxxxxxx
*->rffVRitsAglrEshvH<-*
r+f R s++l Es+v
gi|1159201 104 RQFRRHRSSILSESDVQ 120
Abi_2: domain 1 of 1, from 143 to 158: score 3.0, E = 1
*->KpaltyeeQielLksRG<-*
K lt+eeQ+++L +R+
gi|1159201 143 K-KLTIEEQMKILSERK 158
GN3L_Grn1: domain 1 of 1, from 147 to 176: score 6.5, E = 0.34
*->iEerKqkqeEekearKearkaeraakrklg<-*
iEe+ ++ E+ke r+++++a r+ + ++
gi|1159201 147 IEEQMKILSERKEHRRQRARAWRDTQGTDT 176
DUF471: domain 1 of 1, from 162 to 181: score 2.3, E = 5.6
*->keiSdaWLagkg..grEKGF<-*
++ + aW++++g++++ K F
gi|1159201 162 RQRARAWRDTQGtdTKDKEF 181
Psf3: domain 1 of 1, from 183 to 197: score 0.4, E = 9.7
*->fleGhkkerdflkWl<-*
f+ G+k++++f +++
gi|1159201 183 FEIGKKTKQEFGNFQ 197
CDI: domain 1 of 1, from 190 to 212: score 4.3, E = 2.7
*->rnlfgPvdhElEeffaaaEkqLk<-*
+++fg ++ E++e++ +aE+qL+
gi|1159201 190 KQEFGNFQDEITELKWYAEQQLE 212
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