hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 117306921.fa
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Query sequence: gi|117306921|emb|CAJ90394.1|
Accession: [none]
Description: putative cytotoxin RtxA [Yersinia enterocolitica (type 0:3)]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RtxA RtxA repeat 427.3 2e-126 39
HemolysinCabind Hemolysin-type calcium-binding repeat 43.2 6.2e-12 9
Gp5_C Gp5 C-terminal repeat (3 copies) 10.0 0.059 3
Glyco_hydro_16 Glycosyl hydrolases family 16 7.4 0.091 2
DED Death effector domain 8.1 0.11 1
FdtA WxcM-like, C-terminal 7.3 0.15 1
SpoIIE Stage II sporulation protein E (SpoII 4.9 0.32 1
DUF1667 Protein of unknown function (DUF1667) 6.3 0.55 1
TrbC TrbC/VIRB2 family 6.4 0.62 2
RTX RTX N-terminal domain 1.2 0.67 1
DUF2439 Protein of unknown function (DUF2439) 5.3 0.72 1
Spore_III_AE Stage III sporulation protein AE (spo 4.1 0.86 1
Saf-Nte_pilin Saf-pilin pilus formation protein 4.3 0.91 1
Fil_haemagg Haemagluttinin repeat 4.6 1.3 1
Pro_racemase Proline racemase 2.2 1.4 1
Trp_Tyr_perm Tryptophan/tyrosine permease family 1.8 1.5 1
XLF XLF (XRCC4-like factor) 3.3 1.7 1
Peptidase_M29 Thermophilic metalloprotease (M29) -0.8 1.8 1
Nup133 Nup133 nucleoporin 0.7 1.8 1
Vmethyltransf_C Viral methyltransferase C-terminal 1.6 1.9 1
DUF244 Uncharacterized protein family (ORF7) 3.0 1.9 1
DUF1417 Protein of unknown function (DUF1417) 3.9 2.2 1
Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase 2.2 2.3 1
DUF1641 Protein of unknown function (DUF1641) 5.1 2.4 2
KdpC K+-transporting ATPase, c chain 0.9 2.5 1
Orthopox_F6 Orthopoxvirus F6 protein 3.2 2.6 1
IFNGR1 Interferon gamma receptor alpha chain -0.5 2.6 1
OmpH Outer membrane protein (OmpH-like) 2.5 2.6 1
SRR Seven Residue Repeat 6.4 2.7 1
Salt_tol_Pase Glucosylglycerol-phosphate phosphatas 1.1 3 1
DUF2399 Protein of unknown function (DUF2399) 0.7 3.5 1
DUF1371 Protein of unknown function (DUF1371) 2.7 3.6 1
KGK KGK domain 1.8 3.8 1
Myco_haema Mycoplasma haemagglutinin 0.7 3.9 1
DUF1863 MTH538 TIR-like domain (DUF1863) 2.5 3.9 1
SLT Transglycosylase SLT domain 2.6 3.9 1
PCMT Protein-L-isoaspartate(D-aspartate) O 1.6 3.9 1
FlgN FlgN protein 2.3 3.9 1
Halogen_Hydrol 5-bromo-4-chloroindolyl phosphate hyd 1.1 4 1
Adeno_shaft Adenoviral fibre protein (repeat/shaf 4.6 4.2 4
MTTB Trimethylamine methyltransferase (MTT 0.5 4.3 1
W_rich_C Tryptophan-rich Synechocystis species 1.6 4.3 1
KAP_NTPase KAP family P-loop domain 0.4 4.4 1
SIR2 Sir2 family 2.5 4.4 1
SurA_N SurA N-terminal domain 1.7 4.5 1
DUF469 Protein with unknown function (DUF469 0.2 4.6 1
ubiquitin Ubiquitin family 3.0 4.7 1
DUF1791 Domain of unknown function (DUF1791) 2.6 4.9 2
DUF1510 Protein of unknown function (DUF1510) 0.3 5.1 1
Vps16_C Vps16, C-terminal region 0.7 5.1 1
Sad1_UNC Sad1 / UNC-like C-terminal 2.3 5.4 1
ZipA_C ZipA, C-terminal FtsZ-binding domain 2.2 5.5 1
Xol-1_N Switch protein XOL-1, N-terminal 0.7 5.8 1
RNA_helicase RNA helicase 2.7 5.8 1
DUF313 Domain of unknown function (DUF313) 1.3 5.9 1
CNF1 Rho-activating domain of cytotoxic ne 0.3 6 1
DUF2004 Protein of unknown function (DUF2004) 0.1 6.1 1
gerPA Spore germination protein gerPA/gerPF 1.8 6.3 1
Peptidase_M16_C Peptidase M16 inactive domain 1.4 6.6 1
nsp8 nsp8 replicase 0.3 6.8 1
Myc-LZ Myc leucine zipper domain 2.7 6.8 1
z-alpha Adenosine deaminase z-alpha domain 2.4 7 1
GSHPx Glutathione peroxidase 1.8 7.1 1
Sulfolobus_pRN Sulfolobus plasmid regulatory protein 1.1 7.6 1
TBCA Tubulin binding cofactor A 1.4 7.6 1
Antimicrobial_8 Uperin family 3.5 7.9 2
Transposase_1 Transposase 2.0 8.1 1
RepC Replication protein C (RepC) -0.7 8.2 1
fn3 Fibronectin type III domain 1.9 8.3 1
V-ATPase_G Vacuolar (H+)-ATPase G subunit 1.6 8.7 1
Alpha-2-MRAP_C Alpha-2-macroglobulin RAP, C-terminal 0.1 8.7 1
Peptidase_M24 metallopeptidase family M24 0.1 9 1
Rad4 Rad4 transglutaminase-like domain 1.6 9 1
Wbp11 WW domain binding protein 11 1.7 9.1 1
NAC NAC domain 2.5 9.1 1
DUF1895 Protein of unknown function (DUF1895) 0.8 9.1 1
MAN1_C MAN1 C terminal 1.4 9.2 1
DUF1207 Protein of unknown function (DUF1207) -0.3 9.3 1
RplB Rare lipoprotein B family -0.0 9.4 1
Pescadillo_N Pescadillo N-terminus -0.4 9.5 1
RHSP Retrotransposon hot spot protein -1.9 9.7 1
AhpC-TSA AhpC/TSA family 0.7 9.7 1
DUF2492 Protein of unknown function (DUF2492) 1.6 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
HemolysinCabind 1/9 19 31 .. 1 13 [. 7.9 0.31
SLT 1/1 65 112 .. 80 137 .] 2.6 3.9
RtxA 1/39 66 84 .. 1 19 [] 14.9 0.003
RtxA 2/39 86 108 .. 1 19 [] 13.6 0.0075
DUF2004 1/1 140 157 .. 47 64 .. 0.1 6.1
DUF469 1/1 200 205 .. 100 105 .] 0.2 4.6
Sulfolobus_pRN 1/1 232 239 .. 66 73 .] 1.1 7.6
ubiquitin 1/1 239 265 .. 51 78 .] 3.0 4.7
Alpha-2-MRAP_C 1/1 366 376 .. 1 11 [. 0.1 8.7
Sad1_UNC 1/1 396 420 .. 1 29 [. 2.3 5.4
RtxA 3/39 400 418 .. 1 19 [] 16.1 0.0013
gerPA 1/1 403 420 .. 58 75 .] 1.8 6.3
Fil_haemagg 1/1 411 509 .. 1 75 [] 4.6 1.3
HemolysinCabind 2/9 413 427 .. 4 18 .] 0.1 74
RtxA 4/39 420 438 .. 1 19 [] 16.1 0.0013
ZipA_C 1/1 422 451 .. 1 30 [. 2.2 5.5
RtxA 5/39 440 458 .. 1 19 [] 21.0 4.6e-05
RtxA 6/39 460 478 .. 1 19 [] 17.1 0.00069
Gp5_C 1/3 474 498 .. 1 24 [] 0.5 49
RtxA 7/39 480 497 .. 1 19 [] 7.6 0.45
RtxA 8/39 500 516 .. 2 19 .] 0.2 75
RtxA 9/39 537 555 .. 1 19 [] 8.6 0.23
TrbC 1/2 554 566 .. 70 82 .] 4.3 2.3
DUF1791 1/2 561 581 .. 1 21 [. 2.3 5.9
RtxA 10/39 575 593 .. 1 19 [] 11.4 0.033
RtxA 11/39 597 614 .. 1 19 [] 13.8 0.0062
DUF1641 1/2 611 629 .. 24 42 .] 3.8 5.2
RtxA 12/39 617 633 .. 2 19 .] 3.9 5.9
RtxA 13/39 636 652 .. 2 19 .] 13.7 0.0068
Trp_Tyr_perm 1/1 652 663 .. 430 441 .] 1.8 1.5
RtxA 14/39 654 664 .. 1 11 [. 6.4 1
Spore_III_AE 1/1 671 682 .. 317 328 .] 4.1 0.86
TrbC 2/2 672 685 .. 69 82 .] 2.1 9.8
RtxA 15/39 675 693 .. 1 19 [] 15.4 0.0022
RtxA 16/39 694 712 .. 1 19 [] 11.8 0.026
W_rich_C 1/1 707 731 .. 1 25 [. 1.6 4.3
RtxA 17/39 713 731 .. 1 19 [] 16.2 0.0012
Antimicrobial_8 1/2 715 723 .. 1 9 [. 2.3 18
DUF2492 1/1 727 741 .. 8 22 .. 1.6 10
RtxA 18/39 732 750 .. 1 19 [] 18.1 0.00034
RtxA 19/39 755 770 .. 4 19 .] 6.6 0.88
RNA_helicase 1/1 760 783 .. 28 54 .] 2.7 5.8
RtxA 20/39 771 789 .. 1 19 [] 8.7 0.21
RtxA 21/39 790 808 .. 1 19 [] 15.7 0.0018
SIR2 1/1 801 808 .. 1 8 [. 2.5 4.4
Myco_haema 1/1 806 815 .. 258 267 .. 0.7 3.9
RtxA 22/39 834 850 .. 3 19 .] 9.0 0.17
RtxA 23/39 851 868 .. 1 19 [] 14.7 0.0035
DUF1510 1/1 857 879 .. 183 205 .. 0.3 5.1
RtxA 24/39 870 887 .. 1 19 [] 8.0 0.36
PCMT 1/1 874 891 .. 143 160 .. 1.6 3.9
RtxA 25/39 889 907 .. 1 19 [] 18.0 0.00035
RtxA 26/39 910 926 .. 3 19 .] 7.5 0.49
Adeno_shaft 1/4 925 945 .. 11 30 .] 1.7 26
RtxA 27/39 931 946 .. 4 19 .] 8.1 0.32
RtxA 28/39 947 965 .. 1 19 [] 6.5 0.94
RtxA 29/39 966 984 .. 1 19 [] 16.4 0.0011
Glyco_hydro_16 1/2 978 1021 .. 1 55 [. 2.0 3.3
DUF313 1/1 982 994 .. 119 131 .] 1.3 5.9
RtxA 30/39 986 1003 .. 2 19 .] 12.5 0.016
RtxA 31/39 1025 1043 .. 1 19 [] 10.6 0.057
RtxA 32/39 1044 1062 .. 1 19 [] 12.4 0.017
Glyco_hydro_16 2/2 1056 1081 .. 1 30 [. 5.4 0.35
RtxA 33/39 1068 1081 .. 6 19 .] 4.8 3.2
Vmethyltransf_C 1/1 1075 1102 .. 401 428 .] 1.6 1.9
OmpH 1/1 1079 1097 .. 150 168 .] 2.5 2.6
RtxA 34/39 1082 1100 .. 1 19 [] 4.0 5.5
Adeno_shaft 2/4 1087 1099 .. 18 30 .] 1.2 38
NAC 1/1 1097 1109 .. 49 61 .] 2.5 9.1
RtxA 35/39 1101 1119 .. 1 19 [] 12.0 0.023
Adeno_shaft 3/4 1106 1118 .. 18 30 .] 1.1 40
RtxA 36/39 1120 1138 .. 1 19 [] 13.2 0.0095
RtxA 37/39 1139 1157 .. 1 19 [] 10.0 0.088
RtxA 38/39 1163 1175 .. 6 19 .] 2.5 15
KAP_NTPase 1/1 1262 1294 .. 295 328 .. 0.4 4.4
Pescadillo_N 1/1 1274 1313 .. 259 298 .] -0.4 9.5
Vps16_C 1/1 1334 1365 .. 304 336 .] 0.7 5.1
DED 1/1 1337 1356 .. 1 20 [. 8.1 0.11
XLF 1/1 1362 1391 .. 162 207 .] 3.3 1.7
FlgN 1/1 1365 1406 .. 107 150 .] 2.3 3.9
Pro_racemase 1/1 1406 1414 .. 330 338 .] 2.2 1.4
Antimicrobial_8 2/2 1412 1428 .. 1 17 [] 1.2 39
AhpC-TSA 1/1 1413 1431 .. 94 113 .. 0.7 9.7
KdpC 1/1 1421 1434 .. 150 163 .. 0.9 2.5
Orthopox_F6 1/1 1426 1442 .. 56 72 .] 3.2 2.6
KGK 1/1 1429 1442 .. 1 20 [. 1.8 3.8
TBCA 1/1 1480 1507 .. 20 47 .. 1.4 7.6
RHSP 1/1 1537 1554 .. 878 901 .] -1.9 9.7
MAN1_C 1/1 1670 1695 .. 1 28 [. 1.4 9.2
Salt_tol_Pase 1/1 1716 1730 .. 367 381 .] 1.1 3
MTTB 1/1 1785 1793 .. 509 517 .] 0.5 4.3
CNF1 1/1 1800 1815 .. 299 319 .] 0.3 6
Nup133 1/1 1800 1852 .. 494 548 .] 0.7 1.8
DUF1895 1/1 1804 1816 .. 56 68 .] 0.8 9.1
DUF1863 1/1 1900 1916 .. 1 18 [. 2.5 3.9
FdtA 1/1 1937 1949 .. 123 135 .] 7.3 0.15
Peptidase_M29 1/1 1948 1959 .. 1 12 [. -0.8 1.8
RepC 1/1 1984 1994 .. 278 288 .] -0.7 8.2
Rad4 1/1 2000 2046 .. 1 57 [. 1.6 9
V-ATPase_G 1/1 2002 2030 .. 64 92 .. 1.6 8.7
fn3 1/1 2028 2069 .. 26 68 .. 1.9 8.3
DUF1417 1/1 2029 2039 .. 170 180 .] 3.9 2.2
Wbp11 1/1 2113 2127 .. 1 15 [. 1.7 9.1
DUF2439 1/1 2142 2160 .. 76 94 .] 5.3 0.72
DUF1791 2/2 2143 2177 .. 1 39 [. 0.3 20
nsp8 1/1 2145 2178 .. 170 210 .] 0.3 6.8
Transposase_1 1/1 2165 2176 .. 71 82 .] 2.0 8.1
HemolysinCabind 3/9 2201 2218 .. 1 18 [] 0.6 52
IFNGR1 1/1 2251 2265 .. 478 492 .] -0.5 2.6
DUF1641 2/2 2265 2277 .. 30 42 .] 1.3 28
Myc-LZ 1/1 2305 2338 .. 1 32 [] 2.7 6.8
Adeno_shaft 4/4 2411 2421 .. 1 11 [. 0.7 52
Peptidase_M24 1/1 2416 2428 .. 278 290 .] 0.1 9
Gp5_C 2/3 2431 2447 .. 9 24 .] 3.1 8
RtxA 39/39 2432 2444 .. 6 19 .] 0.2 74
Saf-Nte_pilin 1/1 2446 2453 .. 139 146 .] 4.3 0.91
DUF1667 1/1 2613 2624 .. 103 114 .] 6.3 0.55
DUF1207 1/1 2629 2656 .. 1 28 [. -0.3 9.3
RplB 1/1 2669 2689 .. 142 162 .] -0.0 9.4
DUF2399 1/1 2707 2727 .. 455 475 .] 0.7 3.5
Peptidase_M16_C 1/1 2796 2850 .. 139 198 .] 1.4 6.6
DUF1371 1/1 2802 2815 .. 1 16 [. 2.7 3.6
Peptidase_C12 1/1 2817 2834 .. 291 310 .] 2.2 2.3
SurA_N 1/1 2817 2833 .. 15 31 .. 1.7 4.5
DUF244 1/1 2818 2837 .. 1 23 [. 3.0 1.9
z-alpha 1/1 2834 2850 .. 1 17 [. 2.4 7
GSHPx 1/1 2839 2847 .. 108 116 .] 1.8 7.1
HemolysinCabind 4/9 2887 2904 .. 1 18 [] 9.6 0.096
HemolysinCabind 5/9 2905 2912 .. 1 8 [. 2.3 15
HemolysinCabind 6/9 2923 2930 .. 1 8 [. 1.0 40
SpoIIE 1/1 2924 2938 .. 190 204 .] 4.9 0.32
RTX 1/1 2940 2965 .. 625 650 .. 1.2 0.67
Gp5_C 3/3 2963 2986 .. 1 24 [] 6.4 0.77
SRR 1/1 2964 2977 .. 1 14 [] 6.4 2.7
HemolysinCabind 7/9 3029 3039 .. 8 18 .] 9.3 0.12
HemolysinCabind 8/9 3049 3059 .. 8 18 .] 8.9 0.16
HemolysinCabind 9/9 3070 3077 .. 11 18 .] 3.5 6.7
Xol-1_N 1/1 3082 3089 .. 157 164 .] 0.7 5.8
Halogen_Hydrol 1/1 3171 3181 .. 155 165 .. 1.1 4
Alignments of top-scoring domains:
HemolysinCabind: domain 1 of 9, from 19 to 31: score 7.9, E = 0.31
CS E--SSS-EEEEES
*->yGGaGnDtLyGga<-*
G G+Dt+ Gga
gi|1173069 19 EAGSGDDTIKGGA 31
SLT: domain 1 of 1, from 65 to 112: score 2.6, E = 3.9
CS HHHHHHHHHH..HH-TTS-HHH....HHHHHHHHHHH-GGG---STT
*->NisaGakyLkadslykryggaidpqvnlwlAlaAYNaGpgrvrrwlk
++ aGa++++ + ++ + ++A++AYN +++ + +
gi|1173069 65 AVVAGANIIN--HTGSSGD-------MNIFAIGAYNKITRK-SNGYG 101
CS TTTTSGGG-HH
ytgakakkeyi<-*
+g++ ++++
gi|1173069 102 TNGKLTLDDIV 112
RtxA: domain 1 of 39, from 66 to 84: score 14.9, E = 0.003
*->GaGgaNvitkvGdggdlaf<-*
+gaN+i+++G++gd++
gi|1173069 66 VVAGANIINHTGSSGDMNI 84
RtxA: domain 2 of 39, from 86 to 108: score 13.6, E = 0.0075
*->GaGgaNvitkv....Gdggdlaf<-*
++G++N+it+++++ G++g l++
gi|1173069 86 AIGAYNKITRKsngyGTNGKLTL 108
DUF2004: domain 1 of 1, from 140 to 157: score 0.1, E = 6.1
*->LdgqkFFrILFesKkLsd<-*
L+++k++ F+ K L++
gi|1173069 140 LYEHKYYHNKFSAKALTK 157
DUF469: domain 1 of 1, from 200 to 205: score 0.2, E = 4.6
*->LvDaWy<-*
LvD++y
gi|1173069 200 LVDINY 205
Sulfolobus_pRN: domain 1 of 1, from 232 to 239: score 1.1, E = 7.6
*->LKyREEll<-*
LKy +Ell
gi|1173069 232 LKYEDELL 239
ubiquitin: domain 1 of 1, from 239 to 265: score 3.0, E = 4.7
CS EE.TTTSBCGGCTTTTTEEEEEEEESSS
*->vLreDdrtLseYniqdgsftlhlvlrlr<-*
+L+eD++tL ++ dg+ tl v+++
gi|1173069 239 LLKEDNLTLNAIKLSDGN-TLSAVKSTG 265
Alpha-2-MRAP_C: domain 1 of 1, from 366 to 376: score 0.1, E = 8.7
*->dlFkDkkLnKL<-*
++ DkkLn+L
gi|1173069 366 EVMVDKKLNRL 376
Sad1_UNC: domain 1 of 1, from 396 to 420: score 2.3, E = 5.4
*->lnyeakspkvilqedkDkympgnCwsfkg<-*
+n+e+ ++++++++d + gn +fkg
gi|1173069 396 INFEGGGVANVIDSD---VINGNV-TFKG 420
RtxA: domain 3 of 39, from 400 to 418: score 16.1, E = 0.0013
*->GaGgaNvitkvGdggdlaf<-*
G+G+aNvi++ + +g+++f
gi|1173069 400 GGGVANVIDSDVINGNVTF 418
gerPA: domain 1 of 1, from 403 to 420: score 1.8, E = 6.3
*->aTntfDsDviDQpvigNa<-*
++n++DsDvi +v++
gi|1173069 403 VANVIDSDVINGNVTFKG 420
Fil_haemagg: domain 1 of 1, from 411 to 509: score 4.6, E = 1.3
CS EEESSEEEETT TT--EE-SEEEEEE-STT-E
*->vaaGaltlnaa................alggldlnnggtlsaggglt
v+ G++t ++ + +++ ++++ g++ +n + + + +g+lt
gi|1173069 411 VINGNVTFKGGgaaniithtaakgntyFIGAGIANIIVKSGGEGNLT 457
CS EEE-S-EEESSE.................. .EEEEESS-EEE
ltaagllnnggtliaggdlllaagalrngg........dltltaaGdLdn
++agl n + +gd++++ag + n + ++++ d+tl+a G++++
gi|1173069 458 FNGAGLANVLVHKSQKGDMKVNAGGAVNVMvrlgngqyDVTLIALGNISV 507
CS EE
sg<-*
++
gi|1173069 508 HS 509
HemolysinCabind: domain 2 of 9, from 413 to 427: score 0.1, E = 74
CS SSS-EEEEESSCGEE
*->aGnDtLyGgaGnDtl<-*
+Gn t Gg+ ++++
gi|1173069 413 NGNVTFKGGGAANII 427
RtxA: domain 4 of 39, from 420 to 438: score 16.1, E = 0.0013
*->GaGgaNvitkvGdggdlaf<-*
G+G+aN+it++ + g+++f
gi|1173069 420 GGGAANIITHTAAKGNTYF 438
ZipA_C: domain 1 of 1, from 422 to 451: score 2.2, E = 5.5
CS SSEEEEEEEE-STT--EEHHHHHHHHHHTT
*->kdkvIilnViAkaeseFnGekLlqaleelG<-*
++ Ii +Ak++ F+G+ +++++ ++G
gi|1173069 422 GAANIITHTAAKGNTYFIGAGIANIIVKSG 451
RtxA: domain 5 of 39, from 440 to 458: score 21.0, E = 4.6e-05
*->GaGgaNvitkvGdggdlaf<-*
GaG aN+i+k+G +g+l+f
gi|1173069 440 GAGIANIIVKSGGEGNLTF 458
RtxA: domain 6 of 39, from 460 to 478: score 17.1, E = 0.00069
*->GaGgaNvitkvGdggdlaf<-*
GaG aNv++++++ gd+ +
gi|1173069 460 GAGLANVLVHKSQKGDMKV 478
Gp5_C: domain 1 of 3, from 474 to 498: score 0.5, E = 49
CS S-EEEEESS-EEEEES SEEEEEES
*->GnesltVkGnrtvtVg.GnqTtsVg<-*
G+++++ +G ++v+V Gn + +V
gi|1173069 474 GDMKVNAGGAVNVMVRlGNGQYDVT 498
RtxA: domain 7 of 39, from 480 to 497: score 7.6, E = 0.45
*->GaGgaNvitkvGdggdlaf<-*
++G+ Nv+++ G +g ++
gi|1173069 480 AGGAVNVMVRLG-NGQYDV 497
RtxA: domain 8 of 39, from 500 to 516: score 0.2, E = 75
*->aGgaNvitkvGdggdlaf<-*
++ +N+ +++G +g++++
gi|1173069 500 IALGNISVHSG-DGNSIV 516
RtxA: domain 9 of 39, from 537 to 555: score 8.6, E = 0.23
*->GaGgaNvitkvGdggdlaf<-*
+aGg Nv+tk+G g +
gi|1173069 537 AAGGLNVMTKKGLGSLFSI 555
TrbC: domain 1 of 2, from 554 to 566: score 4.3, E = 2.3
*->viiFgAssIvdti<-*
+i+ g+++Iv+ i
gi|1173069 554 SIVAGGGNIVTNI 566
DUF1791: domain 1 of 2, from 561 to 581: score 2.3, E = 5.9
CS EEEEEE----HHHHHHHHHHH
*->KVVfhidsddpekvnlvLsNi<-*
+V ids d+ v+l L+Ni
gi|1173069 561 NIVTNIDSGDATIVALGLGNI 581
RtxA: domain 10 of 39, from 575 to 593: score 11.4, E = 0.033
*->GaGgaNvitkvGdggdlaf<-*
++G +N+it+ Gd+ ++++
gi|1173069 575 ALGLGNIITHLGDEYYSNL 593
RtxA: domain 11 of 39, from 597 to 614: score 13.8, E = 0.0062
*->GaGgaNvitkvGdggdlaf<-*
G ++aNv+tk+G gd+ +
gi|1173069 597 GVAAANVVTKKG-KGDVQA 614
DUF1641: domain 1 of 2, from 611 to 629: score 3.8, E = 5.2
*->DvqrgLGfllsfLKalGks<-*
Dvq+ LG ++++L ++G++
gi|1173069 611 DVQAILGGGINLLTHIGSG 629
RtxA: domain 12 of 39, from 617 to 633: score 3.9, E = 5.9
*->aGgaNvitkvGdggdlaf<-*
+Gg N +t++G +g +++
gi|1173069 617 GGGINLLTHIG-SGKTDA 633
RtxA: domain 13 of 39, from 636 to 652: score 13.7, E = 0.0068
*->aGgaNvitkvGdggdlaf<-*
+Gg+N++tkvG +gd+++
gi|1173069 636 LGGGNILTKVG-NGDTNV 652
Trp_Tyr_perm: domain 1 of 1, from 652 to 663: score 1.8, E = 1.5
*->vllfGivvilvh<-*
v+ fGi +il+h
gi|1173069 652 VFMFGIGNILTH 663
RtxA: domain 14 of 39, from 654 to 664: score 6.4, E = 1
*->GaGgaNvitkv<-*
+ G +N++t+v
gi|1173069 654 MFGIGNILTHV 664
Spore_III_AE: domain 1 of 1, from 671 to 682: score 4.1, E = 0.86
*->aItIivgaGNit<-*
+I ++vgaGNi
gi|1173069 671 TIGVMVGAGNIY 682
TrbC: domain 2 of 2, from 672 to 685: score 2.1, E = 9.8
*->iviiFgAssIvdti<-*
i++++gA++I++++
gi|1173069 672 IGVMVGAGNIYTKV 685
RtxA: domain 15 of 39, from 675 to 693: score 15.4, E = 0.0022
*->GaGgaNvitkvGdggdlaf<-*
+ G++N+ tkvG+g ++ +
gi|1173069 675 MVGAGNIYTKVGNGTTIGV 693
RtxA: domain 16 of 39, from 694 to 712: score 11.8, E = 0.026
*->GaGgaNvitkvGdggdlaf<-*
+++++N++ ++G+g + a+
gi|1173069 694 MLAAGNIMSHIGTGDTYAL 712
W_rich_C: domain 1 of 1, from 707 to 731: score 1.6, E = 4.3
*->gstgllegifGyyyVqtgDglttpL<-*
g+t +l g+ G+ + + gDg + +L
gi|1173069 707 GDTYALMGGVGNIFTKVGDGDVLAL 731
RtxA: domain 17 of 39, from 713 to 731: score 16.2, E = 0.0012
*->GaGgaNvitkvGdggdlaf<-*
++G++N+ tkvGdg la+
gi|1173069 713 MGGVGNIFTKVGDGDVLAL 731
Antimicrobial_8: domain 1 of 2, from 715 to 723: score 2.3, E = 18
*->GVgdlirKi<-*
GVg ++ K+
gi|1173069 715 GVGNIFTKV 723
DUF2492: domain 1 of 1, from 727 to 741: score 1.6, E = 10
*->eVLnLMLasgepltk<-*
+VL+LMLa+g+ lt+
gi|1173069 727 DVLALMLAKGNILTQ 741
RtxA: domain 18 of 39, from 732 to 750: score 18.1, E = 0.00034
*->GaGgaNvitkvGdggdlaf<-*
+++++N++t+vGdg+++a+
gi|1173069 732 MLAKGNILTQVGDGQTIAL 750
RtxA: domain 19 of 39, from 755 to 770: score 6.6, E = 0.88
*->gaNvitkvGdggdlaf<-*
g+N+ tkvGdg ++ +
gi|1173069 755 GGNIFTKVGDGTTMVA 770
RNA_helicase: domain 1 of 1, from 760 to 783: score 2.7, E = 5.8
*->tkyedlenpeeliqlvstapfplnmAd<-*
tk +d ++ +vs+a+++ + d
gi|1173069 760 TKVGDGT---TMVAMVSMANVMTHIGD 783
RtxA: domain 20 of 39, from 771 to 789: score 8.7, E = 0.21
*->GaGgaNvitkvGdggdlaf<-*
+ aNv+t++Gdg + a+
gi|1173069 771 MVSMANVMTHIGDGETFAL 789
RtxA: domain 21 of 39, from 790 to 808: score 15.7, E = 0.0018
*->GaGgaNvitkvGdggdlaf<-*
+ G+aN+ tkvG+g ++a+
gi|1173069 790 MVGKANIFTKVGAGISVAL 808
SIR2: domain 1 of 1, from 801 to 808: score 2.5, E = 4.4
CS -GGGGGGG
*->GAGISteS<-*
GAGIS+++
gi|1173069 801 GAGISVAL 808
Myco_haema: domain 1 of 1, from 806 to 815: score 0.7, E = 3.9
*->VAPMiGNmYl<-*
VA+M+GNm++
gi|1173069 806 VALMVGNMNI 815
RtxA: domain 22 of 39, from 834 to 850: score 9.0, E = 0.17
*->GgaNvitkvGdggdlaf<-*
G+ Nv+tkvG+g ++a
gi|1173069 834 GKLNVMTKVGNGTTIAI 850
RtxA: domain 23 of 39, from 851 to 868: score 14.7, E = 0.0035
*->GaGgaNvitkvGdggdlaf<-*
+ G+aN++t+vG +g + +
gi|1173069 851 MFGKANIMTHVG-NGITGA 868
DUF1510: domain 1 of 1, from 857 to 879: score 0.3, E = 5.1
*->vvwfvGNnktGSpqkAkgtvsdK<-*
+ vGN+ tG+ +kAkg+v +K
gi|1173069 857 IMTHVGNGITGAISKAKGNVITK 879
RtxA: domain 24 of 39, from 870 to 887: score 8.0, E = 0.36
*->GaGgaNvitkvGdggdlaf<-*
++++Nvitk+G +g + +
gi|1173069 870 SKAKGNVITKIG-DGFTGV 887
PCMT: domain 1 of 1, from 874 to 891: score 1.6, E = 3.9
CS TSEEEEES-GGG--GGG-
*->GnVivvvGDGrqGwpefA<-*
GnVi++ GDG G+ ++A
gi|1173069 874 GNVITKIGDGFTGVLAKA 891
RtxA: domain 25 of 39, from 889 to 907: score 18.0, E = 0.00035
*->GaGgaNvitkvGdggdlaf<-*
+++++N+it+vG+g ++a+
gi|1173069 889 AKAEGNIITHVGKGMSVAV 907
RtxA: domain 26 of 39, from 910 to 926: score 7.5, E = 0.49
*->GgaNvitkvGdggdlaf<-*
G++Nv tkvGdg ++ +
gi|1173069 910 GKGNVFTKVGDGISIGL 926
Adeno_shaft: domain 1 of 4, from 925 to 945: score 1.7, E = 26
CS TEEE-T S-EEE-B-TTEEEE
*->GLtvtn.naLalklGagLtvd<-*
GL ++n++++ + +G+gLtv
gi|1173069 925 GLLISNkGNIMTHVGDGLTVG 945
RtxA: domain 27 of 39, from 931 to 946: score 8.1, E = 0.32
*->gaNvitkvGdggdlaf<-*
++N++t+vGdg ++
gi|1173069 931 KGNIMTHVGDGLTVGI 946
RtxA: domain 28 of 39, from 947 to 965: score 6.5, E = 0.94
*->GaGgaNvitkvGdggdlaf<-*
+G+ N++tkvG+g ++
gi|1173069 947 VKGKLNIVTKVGHGDGINI 965
RtxA: domain 29 of 39, from 966 to 984: score 16.4, E = 0.0011
*->GaGgaNvitkvGdggdlaf<-*
++G Nvit+vG+g+ +f
gi|1173069 966 AWGDSNVITHVGNGNRYNF 984
Glyco_hydro_16: domain 1 of 2, from 978 to 1021: score 2.0, E = 3.3
CS SBTTBTTEE-GGGEEEE...TT...SEEEEEEEEEE EEEEEECCCE
*->fgedfdvtwgggnvsvsedpndadGggLtLtldkes.gdkakdggye
+g+ ++ + g++n+ v+ + G+g ++t k+ ++ +
gi|1173069 978 NGNRYNFIKGKYNI-VT-----RVGQGKEFTVVKADhNLIS------ 1012
CS EE.EEEEEE
ysdGsgfkS<-*
sdG+ + S
gi|1173069 1013 KSDGGKLDS 1021
DUF313: domain 1 of 1, from 982 to 994: score 1.3, E = 5.9
*->YvLvkGWNnVVda<-*
Y+++kG +n+V+
gi|1173069 982 YNFIKGKYNIVTR 994
RtxA: domain 30 of 39, from 986 to 1003: score 12.5, E = 0.016
*->aGgaNvitkvGdggdlaf<-*
+G++N++t+vG+g + ++
gi|1173069 986 KGKYNIVTRVGQGKEFTV 1003
RtxA: domain 31 of 39, from 1025 to 1043: score 10.6, E = 0.057
*->GaGgaNvitkvGdggdlaf<-*
++++ N+it+vGdg+++ +
gi|1173069 1025 AWAESNIITSVGDGQTVVL 1043
RtxA: domain 32 of 39, from 1044 to 1062: score 12.4, E = 0.017
*->GaGgaNvitkvGdggdlaf<-*
++++ NvitkvG+g + ++
gi|1173069 1044 AKAKNNVITKVGKGDSYNV 1062
Glyco_hydro_16: domain 2 of 2, from 1056 to 1081: score 5.4, E = 0.35
CS SBTTBTTEE-GGGEEEE...TT...SEEEE
*->fgedfdvtwgggnvsvsedpndadGggLtL<-*
g+ ++v+w + n+s + dG+++tL
gi|1173069 1056 KGDSYNVLWADKNISTH---VG-DGTKVTL 1081
RtxA: domain 33 of 39, from 1068 to 1081: score 4.8, E = 3.2
*->NvitkvGdggdlaf<-*
N+ t+vGdg +++
gi|1173069 1068 NISTHVGDGTKVTL 1081
Vmethyltransf_C: domain 1 of 1, from 1075 to 1102: score 1.6, E = 1.9
*->eeepvsakkellevvevvesslsessdc<-*
++++v +k +l+v+++v+++l+ + ++
gi|1173069 1075 DGTKVTLAKADLNVTTDVGDGLNVTAVY 1102
OmpH: domain 1 of 1, from 1079 to 1097: score 2.5, E = 2.6
*->vlYadpsiDiTddVlkkLn<-*
v a++++++T dV Ln
gi|1173069 1079 VTLAKADLNVTTDVGDGLN 1097
RtxA: domain 34 of 39, from 1082 to 1100: score 4.0, E = 5.5
*->GaGgaNvitkvGdggdlaf<-*
+++ Nv t vGdg ++++
gi|1173069 1082 AKADLNVTTDVGDGLNVTA 1100
Adeno_shaft: domain 2 of 4, from 1087 to 1099: score 1.2, E = 38
CS -EEE-B-TTEEEE
*->aLalklGagLtvd<-*
++++ +G+gL+v+
gi|1173069 1087 NVTTDVGDGLNVT 1099
NAC: domain 1 of 1, from 1097 to 1109: score 2.5, E = 9.1
*->nTyvVtGeAkekn<-*
n ++V+G+A +++
gi|1173069 1097 NVTAVYGKANVNT 1109
RtxA: domain 35 of 39, from 1101 to 1119: score 12.0, E = 0.023
*->GaGgaNvitkvGdggdlaf<-*
G+aNv tkvGdg ++++
gi|1173069 1101 VYGKANVNTKVGDGISVNV 1119
Adeno_shaft: domain 3 of 4, from 1106 to 1118: score 1.1, E = 40
CS -EEE-B-TTEEEE
*->aLalklGagLtvd<-*
++++k+G+g++v+
gi|1173069 1106 NVNTKVGDGISVN 1118
RtxA: domain 36 of 39, from 1120 to 1138: score 13.2, E = 0.0095
*->GaGgaNvitkvGdggdlaf<-*
+G++Nv tkvG+g ++ +
gi|1173069 1120 VWGKYNVSTKVGNGLNVVV 1138
RtxA: domain 37 of 39, from 1139 to 1157: score 10.0, E = 0.088
*->GaGgaNvitkvGdggdlaf<-*
++G+aN +vG+g ++a+
gi|1173069 1139 MKGKANANIQVGHGLSVAA 1157
RtxA: domain 38 of 39, from 1163 to 1175: score 2.5, E = 15
*->NvitkvGdggdlaf<-*
Nv++kvG +gd +
gi|1173069 1163 NVVVKVG-NGDFYN 1175
KAP_NTPase: domain 1 of 1, from 1262 to 1294: score 0.4, E = 4.4
*->klpleGlmkklqteieelrtdiestLdeFtklqk<-*
k+ +e l k ++ +i++ r+++e++L++ t+++k
gi|1173069 1262 KANSEQLSKIDKPDIDSERKNAEKALED-TSNNK 1294
Pescadillo_N: domain 1 of 1, from 1274 to 1313: score -0.4, E = 9.5
*->Pkldseleeeaaallaydaevssslaaldvganqeqakvv<-*
P +dse ++ ++al+ ++ s+ + ++n++++ ++
gi|1173069 1274 PDIDSERKNAEKALEDTSNNKNSNNHRMNTDNNVSLENNK 1313
Vps16_C: domain 1 of 1, from 1334 to 1365: score 0.7, E = 5.1
*->eerdedvLkevlehiksaedgtlaskvqqalrq<-*
eer + L+ v +++ +d+ + k+++ rq
gi|1173069 1334 EERHRKNLHHV-KNQLDSTDESALAKIGDEYRQ 1365
DED: domain 1 of 1, from 1337 to 1356: score 8.1, E = 0.11
CS HHHHHHHHHCTSCHHHHHHH
*->yrvlLleisenLdsedlesL<-*
+r+ L+++ ++Lds d +L
gi|1173069 1337 HRKNLHHVKNQLDSTDESAL 1356
XLF: domain 1 of 1, from 1362 to 1391: score 3.3, E = 1.7
*->lalesqqvieeLidlLneKDaDDDFdDFQFFGiKreidkLqdkled<
+++++++ +e +l n+ +a +i+ L++ e+
gi|1173069 1362 EYRQQVN--QEAAELVNDHQA--------------AIQSLNELSES 1391
-*
gi|1173069 - -
FlgN: domain 1 of 1, from 1365 to 1406: score 2.3, E = 3.9
*->qqlNerNGrLierslasnqrlLniLqgsrgassttYgadGqtst<-*
qq+N+ ++L++ ++a +q l+++ + + ss+ Yg G + +
gi|1173069 1365 QQVNQEAAELVNDHQAAIQSLNELSES--DTSSSVYGDVGFQVR 1406
Pro_racemase: domain 1 of 1, from 1406 to 1414: score 2.2, E = 1.4
CS T-TTTT---
*->sDPfahGFt<-*
+DPfa+G+
gi|1173069 1406 RDPFANGIL 1414
Antimicrobial_8: domain 2 of 2, from 1412 to 1428: score 1.2, E = 39
*->GVgdlirKivsaiKNVv<-*
G+++ + K v+ +N++
gi|1173069 1412 GILSDVDKQVAQARNIA 1428
AhpC-TSA: domain 1 of 1, from 1413 to 1431: score 0.7, E = 9.7
*->lLsDwpdgevaraYGvlnee<-*
+LsD d++va+a ++ ne+
gi|1173069 1413 ILSD-VDKQVAQARNIANEK 1431
KdpC: domain 1 of 1, from 1421 to 1434: score 0.9, E = 2.5
*->VAkARnisvrqler<-*
VA+ARni + le+
gi|1173069 1421 VAQARNIANEKLEQ 1434
Orthopox_F6: domain 1 of 1, from 1426 to 1442: score 3.2, E = 2.6
*->niinEnlEqYKtesFlt<-*
ni nE lEq t+s
gi|1173069 1426 NIANEKLEQTNTDSKRY 1442
KGK: domain 1 of 1, from 1429 to 1442: score 1.8, E = 3.8
*->ndnleqlNKIvLlemdrkki<-*
n++leq+N d k++
gi|1173069 1429 NEKLEQTN------TDSKRY 1442
TBCA: domain 1 of 1, from 1480 to 1507: score 1.4, E = 7.6
CS HHHHHHHHHHH HHHHH-TTS-HHHHHHH
*->kkEveeeeqRl.eklkeegavDpyrlkkQ<-*
++E+e eeq++++k e++a +++++++Q
gi|1173069 1480 DREAEAEEQKInAKTAENKA-ENDAIQIQ 1507
RHSP: domain 1 of 1, from 1537 to 1554: score -1.9, E = 9.7
*->detnkrefsaGGnaGRHRGRRvDs<-*
d + +r aGG GRRvD
gi|1173069 1537 DKPAGRK-EAGG-----SGRRVDQ 1554
MAN1_C: domain 1 of 1, from 1670 to 1695: score 1.4, E = 9.2
*->kyrlrkykeekaaieelvkevidkLkeq<-*
+ ++ +yk +k+++++ +e+++ L+ +
gi|1173069 1670 RAWYTNYKLAKQHVSK--NEILESLQFN 1695
Salt_tol_Pase: domain 1 of 1, from 1716 to 1730: score 1.1, E = 3
*->gGPkeYiaWFkqLAq<-*
gG k Y +W++ A+
gi|1173069 1716 GGGKAYMSWLQDIAK 1730
MTTB: domain 1 of 1, from 1785 to 1793: score 0.5, E = 4.3
*->iakRkeemG<-*
iakR+++m+
gi|1173069 1785 IAKRRDKMA 1793
CNF1: domain 1 of 1, from 1800 to 1815: score 0.3, E = 6
*->angselsVlnsrLleLlpkdl<-*
+ g++++++n l k+l
gi|1173069 1800 KEGNAIDIINN-----LEKKL 1815
Nup133: domain 1 of 1, from 1800 to 1852: score 0.7, E = 1.8
*->dlsekVEkivedlcvalkqesiarqvleslveeLiateVvtaseLve
++++++ i+ + ++++ + + + ++ +l e++ t t s+++e
gi|1173069 1800 KEGNAIDIINNLEKKLKHKNELTKSIFDRLRGEFKHTDTATPSDIIE 1846
YLSFSLYs<-*
S Ys
gi|1173069 1847 --TLSSYS 1852
DUF1895: domain 1 of 1, from 1804 to 1816: score 0.8, E = 9.1
*->aitIigtvkgdnh<-*
ai Ii++++ ++
gi|1173069 1804 AIDIINNLEKKLK 1816
DUF1863: domain 1 of 1, from 1900 to 1916: score 2.5, E = 3.9
*->rkVFiSFhyeddvawrvn<-*
+++F+SF e+ + + v+
gi|1173069 1900 KNTFVSFESENHA-MSVS 1916
FdtA: domain 1 of 1, from 1937 to 1949: score 7.3, E = 0.15
*->YIRDYdeFlelan<-*
YI++Y +F++ ++
gi|1173069 1937 YIYNYQDFKSFMD 1949
Peptidase_M29: domain 1 of 1, from 1948 to 1959: score -0.8, E = 1.8
CS ----HHHHHHHH
*->MdaFkkeLekyA<-*
Md F k+ + yA
gi|1173069 1948 MDNFTKNRNSYA 1959
RepC: domain 1 of 1, from 1984 to 1994: score -0.7, E = 8.2
*->KyeisRPkaaa<-*
K++isR + +a
gi|1173069 1984 KWDISRSNEQA 1994
Rad4: domain 1 of 1, from 2000 to 2046: score 1.6, E = 9
*->ksltppsfsslksektsddsdegkpktkretsrlkdkdlpypvfWvE
+ ++ +f k++k + t ++t+++ + d + f vE
gi|1173069 2000 LKTGSIEFDLGKKTKGK--------ITEYKTETNDNGDEKITSFTVE 2038
VfCpseeekk<-*
Vf ++++kk
gi|1173069 2039 VF--DKKSKK 2046
V-ATPase_G: domain 1 of 1, from 2002 to 2030: score 1.6, E = 8.7
*->sgelekkiekeTeekIdelkksvnknkea<-*
+g++e ++ k T+ kI+e+k++ n n+++
gi|1173069 2002 TGSIEFDLGKKTKGKITEYKTETNDNGDE 2030
fn3: domain 1 of 1, from 2028 to 2069: score 1.9, E = 8.3
CS -SS--SEEEEEEEEETTTCCCEEEEEETTTSEEEEES--TT-E
*->gngpitgYevtyRqpknggewkeltvpgtttsytltgLkPgte<-*
g+ +it+++v++ +k + + ++++v+ ++ s +++L P+ +
gi|1173069 2028 GDEKITSFTVEV-FDKKSKKMTSVQVDANEFSSPIKNLIPHAD 2069
DUF1417: domain 1 of 1, from 2029 to 2039: score 3.9, E = 2.2
*->eekgtsFtVkV<-*
+ek tsFtV+V
gi|1173069 2029 DEKITSFTVEV 2039
Wbp11: domain 1 of 1, from 2113 to 2127: score 1.7, E = 9.1
*->kKslNPvqAaRKaaK<-*
++NPv A+RK +
gi|1173069 2113 DENYNPVKAERKNRR 2127
DUF2439: domain 1 of 1, from 2142 to 2160: score 5.3, E = 0.72
*->ggyLiqveelistterDis<-*
g++++q+ee ++++e ++
gi|1173069 2142 GQVIVQLEENTAVQEAAVT 2160
DUF1791: domain 2 of 2, from 2143 to 2177: score 0.3, E = 20
CS EEEEEE----HHHHHHHHHHHHHHHHH-S....SEEEEE
*->KVVfhidsddpekvnlvLsNinNllnaygvepenleIeV<-*
V++++ +++ + ++++ +++ Nl + + + +++ +
gi|1173069 2143 QVIVQL-EENTAVQEAAVTWAYNLAAKRP---NSVHVKL 2177
nsp8: domain 1 of 1, from 2145 to 2178: score 0.3, E = 6.8
CS B--GGG-STT.....TGGGS-SSEEEEEEEEEEE...EEET
*->vvHlkEitaeLtYCiNsenLaWPLivtceRvneakvDVkLQ<-*
+v+l E ta ++ +W +++ R ++v VkL
gi|1173069 2145 IVQLEENTAV-----QEAAVTWAYNLAAKRP--NSVHVKLD 2178
Transposase_1: domain 1 of 1, from 2165 to 2176: score 2.0, E = 8.1
*->LaeKRPelanRk<-*
La KRP+ ++ k
gi|1173069 2165 LAAKRPNSVHVK 2176
HemolysinCabind: domain 3 of 9, from 2201 to 2218: score 0.6, E = 52
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
G G+D +Gg+Gn t+
gi|1173069 2201 LVGHGRDKNDGGKGNQTF 2218
IFNGR1: domain 1 of 1, from 2251 to 2265: score -0.5, E = 2.6
*->SLiGYRlTgdsqElS<-*
SL+G RlTg+ q
gi|1173069 2251 SLVGCRLTGENQQQG 2265
DUF1641: domain 2 of 2, from 2265 to 2277: score 1.3, E = 28
*->GfllsfLKalGks<-*
Gf+ +f +a+Gk+
gi|1173069 2265 GFATEFMRAVGKE 2277
Myc-LZ: domain 1 of 1, from 2305 to 2338: score 2.7, E = 6.8
*->aeEqkLiaEKelLRkRREq..LKHKLEqLRnsre<-*
+ ++ i+E + + Eq+++KH + LRn +
gi|1173069 2305 GNQRHKISEDKIVLRWDEQskIKHVNDDLRNNIA 2338
Adeno_shaft: domain 4 of 4, from 2411 to 2421: score 0.7, E = 52
CS S--EEE-B-TT
*->nnsLtlntgpG<-*
+++L++++g+G
gi|1173069 2411 TSNLGIKVGDG 2421
Peptidase_M24: domain 1 of 1, from 2416 to 2428: score 0.1, E = 9
CS EEECSSCEECSTC
*->ivVtedGfenLTf<-*
i V++ Gf++LTf
gi|1173069 2416 IKVGDGGFKTLTF 2428
Gp5_C: domain 2 of 3, from 2431 to 2447: score 3.1, E = 8
CS S-EEEEES SEEEEEES
*->GnrtvtVg.GnqTtsVg<-*
+n+++++g+Gn ++sV+
gi|1173069 2431 NNVMIHIGdGNSKHSVD 2447
RtxA: domain 39 of 39, from 2432 to 2444: score 0.2, E = 74
*->NvitkvGdggdlaf<-*
Nv+ ++G +g++ +
gi|1173069 2432 NVMIHIG-DGNSKH 2444
Saf-Nte_pilin: domain 1 of 1, from 2446 to 2453: score 4.3, E = 0.91
*->ldvvaYQa<-*
+d+++YQa
gi|1173069 2446 VDIAGYQA 2453
DUF1667: domain 1 of 1, from 2613 to 2624: score 6.3, E = 0.55
*->iLgTGVDIIATR<-*
++g+G+DI+AT
gi|1173069 2613 VAGEGADIVATN 2624
DUF1207: domain 1 of 1, from 2629 to 2656: score -0.3, E = 9.3
*->hfldsdipvlvvknvAylisLpadklls<-*
+ ++ i+++ nv l+sL++ + +s
gi|1173069 2629 FVFGDNIQSIMDINVGSLFSLSTQEYTS 2656
RplB: domain 1 of 1, from 2669 to 2689: score -0.0, E = 9.4
*->nEMRrdaAeQLirrlqaLkaa<-*
+++ r++ Li+rl+++ a+
gi|1173069 2669 DDLPRQMKNKLINRLASVNAD 2689
DUF2399: domain 1 of 1, from 2707 to 2727: score 0.7, E = 3.5
*->MaelglaiyeEailddLleDL<-*
++++g +i+eEa+l++ le +
gi|1173069 2707 ISRTGTKIDEEAVLKEMLEIV 2727
Peptidase_M16_C: domain 1 of 1, from 2796 to 2850: score 1.4, E = 6.6
CS EE EEEES....SEEEEEEEE ECCCCHHHHHHHHHHHHHHHHHHHH
*->af.ndsyslndddtGlfgiya.tdpegenldeRvlelileeleklae
af+++s + +lf++ ++ d + ++l++ + + i++ +++
gi|1173069 2796 AFgFNSLK----IPNLFAVIFnKDRQ-TELED-MAKNIQKNMAEDLL 2836
CS TT-SHHHHHHHHHHH
eGiteeelerakaql<-*
+ + ++ +e +k+
gi|1173069 2837 N-MEQKLFEFLKNSG 2850
DUF1371: domain 1 of 1, from 2802 to 2815: score 2.7, E = 3.6
*->MDlrignnFelVFNnD<-*
l+i n F ++FN+D
gi|1173069 2802 --LKIPNLFAVIFNKD 2815
Peptidase_C12: domain 1 of 1, from 2817 to 2834: score 2.2, E = 2.3
*->edfLedaaplpviqeriery<-*
++ Led a + iq+ ++++
gi|1173069 2817 QTELEDMA--KNIQKNMAED 2834
SurA_N: domain 1 of 1, from 2817 to 2833: score 1.7, E = 4.5
*->qSELdrrvktVkrqlak<-*
q EL++++k++++++a+
gi|1173069 2817 QTELEDMAKNIQKNMAE 2833
DUF244: domain 1 of 1, from 2818 to 2837: score 3.0, E = 1.9
*->lEVsnlrnkIkknyaieLlishN<-*
E + +++ I kn a++Ll N
gi|1173069 2818 TELEDMAKNIQKNMAEDLL---N 2837
z-alpha: domain 1 of 1, from 2834 to 2850: score 2.4, E = 7
CS HHHHHHHHHHHHHHHC-
*->dmaeleekvLefLknig<-*
d + e+k+ efLkn+g
gi|1173069 2834 DLLNMEQKLFEFLKNSG 2850
GSHPx: domain 1 of 1, from 2839 to 2847: score 1.8, E = 7.1
CS B-HHHHHHH
*->ahPLYkFLK<-*
+++L+ FLK
gi|1173069 2839 EQKLFEFLK 2847
HemolysinCabind: domain 4 of 9, from 2887 to 2904: score 9.6, E = 0.096
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG+G+D+ yG + +++
gi|1173069 2887 WGGNGDDVFYGMGISNIF 2904
HemolysinCabind: domain 5 of 9, from 2905 to 2912: score 2.3, E = 15
CS E--SSS-E
*->yGGaGnDt<-*
+GG+GnD+
gi|1173069 2905 TGGKGNDV 2912
HemolysinCabind: domain 6 of 9, from 2923 to 2930: score 1.0, E = 40
CS E--SSS-E
*->yGGaGnDt<-*
+G+aG+D+
gi|1173069 2923 FGDAGDDV 2930
SpoIIE: domain 1 of 1, from 2924 to 2938: score 4.9, E = 0.32
*->geleDDvtlLvlrvr<-*
g+ DDv++L+ rv+
gi|1173069 2924 GDAGDDVAVLAGRVN 2938
RTX: domain 1 of 1, from 2940 to 2965: score 1.2, E = 0.67
*->shLGdgdDkVFvgSGStevdAGeGHD<-*
+ LG+g+D+VF+ + ++d G G D
gi|1173069 2940 AYLGEGNDQVFILGETGVIDTGSGQD 2965
Gp5_C: domain 3 of 3, from 2963 to 2986: score 6.4, E = 0.77
CS S-EEEEESS-EEEEESSEEEEEES
*->GnesltVkGnrtvtVgGnqTtsVg<-*
G+++ +V Gn++++ G ++ V
gi|1173069 2963 GQDYAVVAGNFNQLSSGAEKDYVV 2986
SRR: domain 1 of 1, from 2964 to 2977: score 6.4, E = 2.7
*->ekfekVknnYelLs<-*
++++ V +n+++Ls
gi|1173069 2964 QDYAVVAGNFNQLS 2977
HemolysinCabind: domain 7 of 9, from 3029 to 3039: score 9.3, E = 0.12
CS EEEEESSCGEE
*->tLyGgaGnDtl<-*
++yGg+G+D l
gi|1173069 3029 IIYGGEGDDEL 3039
HemolysinCabind: domain 8 of 9, from 3049 to 3059: score 8.9, E = 0.16
CS EEEEESSCGEE
*->tLyGgaGnDtl<-*
++ Gg+GnD++
gi|1173069 3049 RIEGGEGNDII 3059
HemolysinCabind: domain 9 of 9, from 3070 to 3077: score 3.5, E = 6.7
CS EESSCGEE
*->GgaGnDtl<-*
GgaGnD +
gi|1173069 3070 GGAGNDYF 3077
Xol-1_N: domain 1 of 1, from 3082 to 3089: score 0.7, E = 5.8
CS HHHHHHHH
*->aviDailS<-*
aviD++ S
gi|1173069 3082 AVIDCTVS 3089
Halogen_Hydrol: domain 1 of 1, from 3171 to 3181: score 1.1, E = 4
*->LDnlVeLteKY<-*
LD+lV++++KY
gi|1173069 3171 LDSLVDMMSKY 3181
//