hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 117923736.fa
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Query sequence: gi|117923736|ref|YP_864353.1|
Accession: [none]
Description: cadherin [Magnetococcus sp. MC-1]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Cadherin Cadherin domain 64.7 7.9e-18 4
He_PIG Putative Ig domain 29.1 1.8e-07 4
PKD PKD domain 21.2 5.6e-06 4
DAG1 Dystroglycan (Dystrophin-associated g 7.2 0.03 1
PGK Phosphoglycerate kinase 7.0 0.076 1
HYR HYR domain 5.8 0.41 1
Peptidase_C3 3C cysteine protease (picornain 3C) 3.4 1 1
Drmip_Hesp Developmentally Regulated MAPK Intera 3.6 1.7 1
PepSY Peptidase propeptide and YPEB domain 5.1 1.7 1
DUF2102 Uncharacterized protein conserved in 3.5 1.9 1
Cna_B Cna protein B-type domain 3.1 2.1 1
fn3 Fibronectin type III domain 3.6 2.7 1
DUF218 DUF218 domain 3.0 2.9 1
UreD UreD urease accessory protein 1.2 4.1 1
SoxZ Sulphur oxidation protein SoxZ 2.2 4.1 1
CbiZ Adenosylcobinamide amidohydrolase 2.2 4.4 1
TrbL TrbL/VirB6 plasmid conjugal transfer 1.6 4.6 1
B3_4 B3/4 domain 1.7 4.6 1
UPF0052 Uncharacterised protein family UPF005 0.9 5.1 1
Bro-N BRO family, N-terminal domain 1.9 5.3 1
Fe-S_biosyn Iron-sulphur cluster biosynthesis 2.2 6.1 1
DUF1278 Protein of unknown function (DUF1278) 1.5 6.6 1
Ssu72 Ssu72-like protein -0.3 6.6 1
DUF849 Prokaryotic protein of unknown functi 0.1 7.3 1
LEA_5 Small hydrophilic plant seed protein 0.8 7.4 1
Ham1p_like Ham1 family 0.6 8 1
STE STE like transcription factor 0.3 8.2 1
DUF1802 Domain of unknown function (DUF1802) 0.8 8.4 1
DUF1860 Domain of unknown function (DUF1860) -1.0 8.8 1
Peptidase_C25_C Peptidase family C25, C terminal ig-l 1.1 8.8 1
MpPF1 M penetrans paralogue family 1 -1.3 9.2 1
Phage_X Phage X family 1.1 9.5 1
PQQ PQQ enzyme repeat 2.2 9.7 1
Homoserine_dh Homoserine dehydrogenase 0.6 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UPF0052 1/1 65 113 .. 333 381 .] 0.9 5.1
LEA_5 1/1 69 90 .. 1 22 [. 0.8 7.4
DUF2102 1/1 101 111 .. 94 104 .] 3.5 1.9
Ham1p_like 1/1 118 126 .. 1 9 [. 0.6 8
Homoserine_dh 1/1 170 182 .. 187 200 .] 0.6 9.8
B3_4 1/1 180 191 .. 173 184 .] 1.7 4.6
TrbL 1/1 181 208 .. 255 285 .] 1.6 4.6
Ssu72 1/1 326 334 .. 1 9 [. -0.3 6.6
CbiZ 1/1 360 375 .. 91 106 .. 2.2 4.4
Bro-N 1/1 476 491 .. 1 18 [. 1.9 5.3
PQQ 1/1 530 567 .. 1 37 [] 2.2 9.7
STE 1/1 600 624 .. 1 26 [. 0.3 8.2
Phage_X 1/1 682 692 .. 92 102 .] 1.1 9.5
PepSY 1/1 696 720 .. 45 68 .] 5.1 1.7
Cadherin 1/4 721 779 .. 40 105 .. 7.7 0.17
PGK 1/1 725 744 .. 298 318 .. 7.0 0.076
He_PIG 1/4 757 768 .. 50 61 .] 5.6 0.86
PKD 1/4 757 778 .. 70 92 .] 4.7 0.64
Cadherin 2/4 788 872 .. 1 107 [] 25.4 1.4e-06
He_PIG 2/4 847 863 .. 44 61 .] 0.7 21
PKD 2/4 851 873 .. 69 92 .] 3.6 1.4
Cna_B 1/1 852 874 .. 49 77 .] 3.1 2.1
Cadherin 3/4 908 973 .. 31 107 .] 5.2 0.89
Peptidase_C3 1/1 936 959 .. 1 30 [. 3.4 1
Drmip_Hesp 1/1 941 954 .. 1 15 [. 3.6 1.7
MpPF1 1/1 947 958 .. 399 410 .. -1.3 9.2
He_PIG 3/4 951 962 .. 50 61 .] 3.9 2.6
PKD 3/4 951 972 .. 70 92 .] 12.6 0.0024
SoxZ 1/1 952 972 .. 83 104 .] 2.2 4.1
Fe-S_biosyn 1/1 970 979 .. 1 10 [. 2.2 6.1
Cadherin 4/4 1003 1069 .. 27 107 .] 26.3 7.7e-07
PKD 4/4 1047 1068 .. 70 92 .] 0.2 16
fn3 1/1 1091 1109 .. 1 19 [. 3.6 2.7
DUF1802 1/1 1118 1144 .. 157 186 .] 0.8 8.4
Peptidase_C25_C 1/1 1140 1152 .. 7 19 .. 1.1 8.8
DUF1278 1/1 1147 1184 .. 1 42 [. 1.5 6.6
DUF1860 1/1 1202 1230 .. 194 220 .] -1.0 8.8
DAG1 1/1 1205 1257 .. 44 98 .. 7.2 0.03
DUF218 1/1 1217 1238 .. 1 19 [. 3.0 2.9
He_PIG 4/4 1228 1270 .. 1 61 [] 19.0 0.00013
HYR 1/1 1257 1279 .. 60 86 .] 5.8 0.41
UreD 1/1 1260 1275 .. 207 222 .] 1.2 4.1
DUF849 1/1 1272 1281 .. 1 10 [. 0.1 7.3
Alignments of top-scoring domains:
UPF0052: domain 1 of 1, from 65 to 113: score 0.9, E = 5.1
*->dvlvnvedvpseedlkkyeregsepvdidkeadeklglraieanlla
+vl+ v + dl+ +++eg+++v+ d ++d + + +a+ l
gi|1179237 65 RVLLVASNVADGDDLAAAAQEGVVVVRYDAFNDSGAAILEKIAQALD 111
ee<-*
+
gi|1179237 112 GR 113
LEA_5: domain 1 of 1, from 69 to 90: score 0.8, E = 7.4
*->mAsgqeereeLdrrAkqGetvv<-*
+As+ ++ ++L++ A++G vv
gi|1179237 69 VASNVADGDDLAAAAQEGVVVV 90
DUF2102: domain 1 of 1, from 101 to 111: score 3.5, E = 1.9
*->klLpkIsrALe<-*
++L+kI+ AL+
gi|1179237 101 AILEKIAQALD 111
Ham1p_like: domain 1 of 1, from 118 to 126: score 0.6, E = 8
CS EEEE-S-HH
*->lvfATgNpg<-*
+ fAT+N+g
gi|1179237 118 IAFATHNAG 126
Homoserine_dh: domain 1 of 1, from 170 to 182: score 0.6, E = 9.8
CS -HHHHHHHHHHHHH
*->GaepTAsaVvaDiv<-*
G e+ A++V++D +
gi|1179237 170 GCEV-AGSVQGDML 182
B3_4: domain 1 of 1, from 180 to 191: score 1.7, E = 4.6
CS HHHHHHHHHHS-
*->drAaaLilelaG<-*
d++++Li+++aG
gi|1179237 180 DMLVSLISDIAG 191
TrbL: domain 1 of 1, from 181 to 208: score 1.6, E = 4.6
*->lllkqipgiAqglvgavvtlggavaaalaGG<-*
+l++ i +iA+ v+a++ +g a++GG
gi|1179237 181 MLVSLISDIAGRAVAASDDATG---NAASGG 208
Ssu72: domain 1 of 1, from 326 to 334: score -0.3, E = 6.6
*->SkLrvAVVC<-*
S ++AVVC
gi|1179237 326 SSIQYAVVC 334
CbiZ: domain 1 of 1, from 360 to 375: score 2.2, E = 4.4
*->glkVtafaTAGisnpa<-*
++kVta+ TAGi+np+
gi|1179237 360 TVKVTAATTAGITNPV 375
Bro-N: domain 1 of 1, from 476 to 491: score 1.9, E = 5.3
*->evrtvvdingepWFvAkD<-*
++ tv ing+ +F A D
gi|1179237 476 QFFTV--INGKAYFAASD 491
PQQ: domain 1 of 1, from 530 to 567: score 2.2, E = 9.7
CS TEEEEETTTSEEEEEETTTTSEEEEEESSSGGGS GEE
*->gvvyvgtadGylyAlDakTGkvlWkfktggpvds.pvt<-*
g+vy++ +dG+ + ++G ++ + g+ +s+p+
gi|1179237 530 GDVYFTAYDGTASQILTTSGTFASTVSVAGGFNStPQF 567
STE: domain 1 of 1, from 600 to 624: score 0.3, E = 8.2
*->nqvirRflLpndegyvsCvfWnnLyy<-*
++i+ + nd y v+ nnLy+
gi|1179237 600 -KNINIYGSGNDKFYYPAVYNNNLYF 624
Phage_X: domain 1 of 1, from 682 to 692: score 1.1, E = 9.5
*->dWYvepvlstn<-*
d+Y++p++s++
gi|1179237 682 DNYYGPIFSSS 692
PepSY: domain 1 of 1, from 696 to 720: score 5.1, E = 1.7
*->vvv.dddg.rlevyvDaytGevlgve<-*
v+ ++++g+++++y +a +Gev+ ++
gi|1179237 696 VFSeNGGGtVFTAYANA-DGEVIFTL 720
Cadherin: domain 1 of 4, from 721 to 779: score 7.7, E = 0.17
CS --S S----B-TTSSEEE..E---S---S.... .S-B--EEE-
*->gnp.ggwFrIdpdtGdnegiisttkpLDREeif....ngeYeLtveA
g+ ++++F I+ +tG+ ++ + D+E++ + + + YeLt+ A
gi|1179237 721 GGAdADKFDINAATGV----VTFKSIPDYETPAsaagSNYYELTITA 763
CS ---.........S---EEEE--EE
tDadpllasgggpplsstatvtit<-*
tD + +++ +v ++
gi|1179237 764 TDT--------SGSMDKALQVLVH 779
PGK: domain 1 of 1, from 725 to 744: score 7.0, E = 0.076
CS ESSSSTTS-EEEEETTTT--T
*->adkFaadAntqvvtdaeGIPD<-*
adkF+ +A+t+vvt ++ IPD
gi|1179237 725 ADKFDINAATGVVTFKS-IPD 744
He_PIG: domain 1 of 4, from 757 to 768: score 5.6, E = 0.86
*->ytftvtatdgsg<-*
y+ t+tatd+sg
gi|1179237 757 YELTITATDTSG 768
PKD: domain 1 of 4, from 757 to 778: score 4.7, E = 0.64
CS EEEEEEEEETTCEEEEEEEEEEE
*->YtVtLtvsngvgsasattttvtV<-*
Y +t t+++ gs ++ ++v V
gi|1179237 757 YELTITATDTSGSMDKA-LQVLV 778
Cadherin: domain 2 of 4, from 788 to 872: score 25.4, E = 1.4e-06
CS --EEE-SS...S---EEEEE---S..-TTTT----------SS----
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
++v ++++Gt+v At + +g+ ++++ si ggn +g F+
gi|1179237 788 SAVEVADTSANGTSV----ATPSS--TGDTTSVTWSIQGGNASGLFA 828
CS B-TTSSEEE..E---S- --S.....S-B--EEE----.........S-
IdpdtGdnegiisttkp..LDREeifngeYeLtveAtDadpllasgggpp
I+ tG i+++ ++ D ++ + Y+L+v+A+D+
gi|1179237 829 INASTGA----ITIADAtkFDHATT--PSYTLSVRASDG----------- 861
CS --EEEE--EEE-
lsstatvtitVl<-*
++ + itV+
gi|1179237 862 -TTNTDHDITVT 872
He_PIG: domain 2 of 4, from 847 to 863: score 0.7, E = 21
*->tvqpGsytftvtatdgsg<-*
+++p syt v a+dg +
gi|1179237 847 ATTP-SYTLSVRASDGTT 863
PKD: domain 2 of 4, from 851 to 873: score 3.6, E = 1.4
CS EEEEEEEEEETTCEEEEEEEEEEE
*->tYtVtLtvsngvgsasattttvtV<-*
+Yt+++++s+g +++ +tvtV
gi|1179237 851 SYTLSVRASDGTTNTDHD-ITVTV 873
Cna_B: domain 1 of 1, from 852 to 874: score 3.1, E = 2.1
CS EEEEEEESSS-............EEEEEE
*->Ytltttpveftitensdgeeekivtvtit<-*
Ytl+ + t++ + d tvt+t
gi|1179237 852 YTLSVRASDGTTNTDHD------ITVTVT 874
Cadherin: domain 3 of 4, from 908 to 973: score 5.2, E = 0.89
CS T----------SS----B-TTSSEEE..E---S---S.... .S
*->grirYsilggnpggwFrIdpdtGdnegiisttkpLDREeif....ng
g ++Y+i g++ g +F Id +G ++ ++ D E+ + + +
gi|1179237 908 GTVSYAIGGTD-GAKFNIDGSSGA----VTFKAAPDFEALAsaasSN 949
CS -B--EEE----.........S---EEEE--EEE-
eYeLtveAtDadpllasgggpplsstatvtitVl<-*
Y++t++AtD + + t v+itV+
gi|1179237 950 AYTVTLSATDD----------NGTHTQDVVITVT 973
Peptidase_C3: domain 1 of 1, from 936 to 959: score 3.4, E = 1
*->gPsldfCmPaqsllkkNivpvttyldskGe<-*
+P+++ + s + +N+++vt+ s+++
gi|1179237 936 APDFEA---LASAASSNAYTVTL---SATD 959
Drmip_Hesp: domain 1 of 1, from 941 to 954: score 3.6, E = 1.7
*->llAllAalaaAiqIT<-*
lA+ Aa+++A+++T
gi|1179237 941 ALAS-AASSNAYTVT 954
MpPF1: domain 1 of 1, from 947 to 958: score -1.3, E = 9.2
*->snktYTITLtAt<-*
s++ YT+TL+At
gi|1179237 947 SSNAYTVTLSAT 958
He_PIG: domain 3 of 4, from 951 to 962: score 3.9, E = 2.6
*->ytftvtatdgsg<-*
yt+t++atd g
gi|1179237 951 YTVTLSATDDNG 962
PKD: domain 3 of 4, from 951 to 972: score 12.6, E = 0.0024
CS EEEEEEEEETTCEEEEEEEEEEE
*->YtVtLtvsngvgsasattttvtV<-*
YtVtL +++++g+ ++ + +tV
gi|1179237 951 YTVTLSATDDNGTHTQD-VVITV 972
SoxZ: domain 1 of 1, from 952 to 972: score 2.2, E = 4.1
CS .EEEEEEETTS-EEEEEEEE--
*->elkfsWtDnkGssetaeakItv<-*
++++s tD++G++ +++ +Itv
gi|1179237 952 TVTLSATDDNGTHTQDV-VITV 972
Fe-S_biosyn: domain 1 of 1, from 970 to 979: score 2.2, E = 6.1
CS -EE-HHHHHH
*->ItLTdaAakh<-*
It+TdaA ++
gi|1179237 970 ITVTDAAPAW 979
Cadherin: domain 4 of 4, from 1003 to 1069: score 26.3, E = 7.7e-07
CS -TTTT----------SS----B-TTSSEEE..E---S- --S....
*->lgpNgrirYsilggnpggwFrIdpdtGdnegiisttkp..LDREeif
+g+N++++ si +gn +g F+I+ +tG+ i+++ ++ D +
gi|1179237 1003 TGDNSGVTWSIQSGNASGLFAINAATGV----ITVADAskFDFSNT- 1044
CS .S-B--EEE----.........S---EEEE--EEE-
ngeYeLtveAtDadpllasgggpplsstatvtitVl<-*
+ Y+L+v+AtD+ + s+ +++ V
gi|1179237 1045 -PFYTLSVRATDG----------NTSADHNLVVAVV 1069
PKD: domain 4 of 4, from 1047 to 1068: score 0.2, E = 16
CS EEEEEEEEETTCEEEEEEEEEEE
*->YtVtLtvsngvgsasattttvtV<-*
Yt+++++++g+ sa+ + + v V
gi|1179237 1047 YTLSVRATDGNTSADHN-LVVAV 1068
fn3: domain 1 of 1, from 1091 to 1109: score 3.6, E = 2.7
CS ----CEEEEEEECTTEEEE
*->PsaPtnltvtdvtstsltl<-*
PsaP + v +v+++++t+
gi|1179237 1091 PSAPPPVVVAPVGESTVTV 1109
DUF1802: domain 1 of 1, from 1118 to 1144: score 0.8, E = 8.4
*->SWinLnesislaesrPVlsDeeFaqlaqei<-*
S+i+L + +sl +P+ sD++ ++a +
gi|1179237 1118 SFIPL-PAVSLRATPPAASDAA--RTAPAA 1144
Peptidase_C25_C: domain 1 of 1, from 1140 to 1152: score 1.1, E = 8.8
CS E--SEEETT-SEE
*->TaPAsipqnqaSy<-*
TaPA +p+++aS+
gi|1179237 1140 TAPAALPASAASV 1152
DUF1278: domain 1 of 1, from 1147 to 1184: score 1.5, E = 6.6
*->MAskssflptlvvllllllaaasvasarpvptvaegttspat<-*
As+ s+ p+ v ++++ + ++ ++++vp v++ + pa+
gi|1179237 1147 -ASAASVVPV--VMTAQFTV-STELGGFRVPVVTASQGGPAV 1184
DUF1860: domain 1 of 1, from 1202 to 1230: score -1.0, E = 8.8
*->DvLKFsLCnDGAAL..snYiinitAAKin<-*
Dv++ sL D A ++ ++ +tAA+in
gi|1179237 1202 DVVRVSLPADAFAHtrTDAVVVLTAARIN 1230
DAG1: domain 1 of 1, from 1205 to 1257: score 7.2, E = 0.03
CS XXXXXXXXXXXXXX..XXXXXXXXXXX..X..XXXXXXXXXXXXXXX
*->rlhvptellassedqGiikiseadKdgheLkapswLhwdadsrtLqG
r+ p +++a ++ +++a +g L pswL +d+ s+tL G
gi|1179237 1205 RVSLPADAFAHTRTDAVVVLTAARINGQPL--PSWLNFDSRSGTLSG 1249
CS XXXXXXXX
LPLdtDKG<-*
P + KG
gi|1179237 1250 SPPADLKG 1257
DUF218: domain 1 of 1, from 1217 to 1238: score 3.0, E = 2.9
*->kaDaIvVLGggly.n.p.pspl<-*
+ Da+vVL ++ +++p ps+l
gi|1179237 1217 RTDAVVVLTAARInGqPlPSWL 1238
He_PIG: domain 4 of 4, from 1228 to 1270: score 19.0, E = 0.00013
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
+ + +LPs+L++ds +G+++G+P+
gi|1179237 1228 RING-----------------QPLPSWLNFDSRSGTLSGSPPADLK- 1256
Gsytftvtatdgsg<-*
G++ + + a d g
gi|1179237 1257 GTTVVKIIARDNLG 1270
HYR: domain 1 of 1, from 1257 to 1279: score 5.8, E = 0.41
*->GEettVtYtatDnaGNeAdsCtFtVtV<-*
G +t+V +a+Dn GNeA tV++
gi|1179237 1257 G-TTVVKIIARDNLGNEA---IITVRI 1279
UreD: domain 1 of 1, from 1260 to 1275: score 1.2, E = 4.1
*->vvRvLgksaedvrhvf<-*
vv+++++++ +++++
gi|1179237 1260 VVKIIARDNLGNEAII 1275
DUF849: domain 1 of 1, from 1272 to 1281: score 0.1, E = 7.3
*->KvIITcAvTG<-*
+IIT+ ++G
gi|1179237 1272 EAIITVRING 1281
//