hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 117924452.fa
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Query sequence: gi|117924452|ref|YP_865069.1|
Accession: [none]
Description: putative outer membrane adhesin like proteiin [Magnetococcus sp. MC-1]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Cadherin Cadherin domain 24.2 3.2e-06 7
YbbR YbbR-like protein 12.2 0.0067 2
Nup133_N Nup133 N terminal like 6.7 0.034 1
YaeQ YaeQ protein 7.7 0.046 2
Crinivirus_P26 Crinivirus P26 protein 4.3 0.13 1
DUF77 Domain of unknown function DUF77 7.7 0.15 1
Mu-like_GpL Bacteriophage Mu tail sheath protein 4.0 0.16 1
GHMP_kinases_C GHMP kinases C terminal 6.9 0.2 1
HYR HYR domain 6.3 0.31 3
Pox_I1 Poxvirus protein I1 5.1 0.32 1
DUF1869 Domain of unknown function (DUF1869) 2.4 0.41 1
DUF490 Family of unknown function (DUF490) 4.0 0.65 1
Phage_Capsid_P3 P3 major capsid protein 2.4 0.75 1
Peptidase_M4_C Thermolysin metallopeptidase, alpha-h 3.3 0.85 1
DUF1522 Domain of Unknown Function (DUF1522) 4.6 0.86 1
DUF2381 Protein of unknown function (DUF2381) 3.6 0.87 1
PKD PKD domain 4.2 0.95 3
Cache_2 Cache domain 5.3 1.1 1
gerPA Spore germination protein gerPA/gerPF 4.3 1.1 2
DUF1841 Domain of unknown function (DUF1841) 4.2 1.1 1
Arylsulfotrans Arylsulfotransferase (ASST) 2.3 1.2 1
Adeno_shaft Adenoviral fibre protein (repeat/shaf 6.6 1.2 2
Phage_tail_3 Phage tail protein 4.1 1.3 1
MspA MspA 3.8 1.3 2
DUF402 Protein of unknown function (DUF402) 5.2 1.3 1
HMD H2-forming N5,N10-methylenetetrahydro 3.7 1.3 1
PhoPQ_related PhoPQ-activated pathogenicity-related -0.4 1.4 1
SHD1 SLA1 homology domain 1, SHD1 4.2 1.5 1
BNR BNR/Asp-box repeat 6.2 1.6 1
DBI_PRT Phosphoribosyltransferase 1.2 1.6 1
DUF2373 Uncharacterised conserved protein (DU 4.7 1.6 1
MOFRL MOFRL family 4.4 1.7 2
A2M_N_2 Alpha-2-macroglobulin family N-termin 3.9 1.7 1
Big_3 Bacterial Ig-like domain (group 3) 5.0 1.8 3
Sipho_tail Siphovirus tail component protein 0.7 1.9 1
AMH_N Anti-Mullerian hormone, N terminal re 1.1 2 1
Prox1 Homeobox prospero-like protein (PROX1 -0.7 2.3 1
NUDIX-like NADH pyrophosphatase-like rudimentary 3.4 2.5 1
DUF2026 Protein of unknown function (DUF2026) 0.8 2.5 1
Antig_Caf1 Caf1 Capsule antigen 1.8 2.6 1
FMC1 FMC1 protein family 1.1 2.7 1
RAP-1 Rhoptry-associated protein 1 (RAP-1) 2.0 2.9 1
DUF2134 Predicted membrane protein (DUF2134) 2.8 2.9 1
Viral_protease Papain like viral protease 1.8 2.9 1
GBS_Bsp-like GBS Bsp-like repeat 2.6 3.3 1
DUF436 Protein of unknown function (DUF436) 0.9 3.7 1
DUF2418 Protein of unknown function (DUF2418) 2.6 4 1
CbiD CbiD 1.4 4.1 1
DUF2009 Protein of unknown function (DUF2009) 0.4 4.5 1
Phycobilisome Phycobilisome protein 1.7 4.5 1
ChiC Chitinase C 1.3 4.5 1
MNNL N terminus of Notch ligand 2.7 4.9 1
MOSP_C Major Outer Sheath Protein C-terminal 0.4 4.9 1
Rep_fac_C Replication factor C 2.5 5.1 1
UPF0164 Uncharacterised protein family (UPF01 0.3 5.3 1
PTR2 POT family 0.6 5.4 1
DUF1391 Protein of unknown function (DUF1391) 2.7 5.4 1
CBM_6 Carbohydrate binding module (family 6 1.3 5.6 1
Baculo_p74_N Baculoviridae P74 N-terminal 0.6 5.7 1
Calici_MSP Calicivirus minor structural protein 0.8 5.7 1
DUF883 Bacterial protein of unknown function 2.8 5.8 1
Pas_Saposin Pas factor saposin fold 2.3 5.8 1
RCC1 Regulator of chromosome condensation 2.3 5.9 1
AsmA AsmA family -0.6 5.9 1
DUF1257 Protein of unknown function (DUF1257) 2.3 6.2 1
DUF802 Domain of unknown function (DUF802) 3.2 6.2 1
DUF1396 Protein of unknown function (DUF1396) -0.8 6.3 1
Urm1 Urm1 (Ubiquitin related modifier) -1.6 6.3 1
Cohesin Cohesin domain 1.6 6.8 2
DUF1174 Repeat of unknown function (DUF1174) 3.5 6.8 1
DUF1659 Protein of unknown function (DUF1659) 2.5 6.9 1
PilS PilS N terminal 0.9 7.1 1
RFX1_trans_act RFX1 transcription activation region 0.7 7.5 1
Catalase Catalase 0.1 7.6 1
Serglycin Serglycin 0.6 7.7 1
Cofilin_ADF Cofilin/tropomyosin-type actin-bindin 1.3 7.9 1
DUF1320 Protein of unknown function (DUF1320) 1.5 7.9 1
NgoMIV_restric NgoMIV restriction enzyme -0.0 7.9 1
DUF2061 Predicted membrane protein (DUF2061) 2.8 7.9 1
Cellulase Cellulase (glycosyl hydrolase family -0.6 8 1
Corona_M Coronavirus M matrix/glycoprotein 0.0 8.1 1
CorC_HlyC Transporter associated domain 2.1 8.1 1
Peptidase_S8 Subtilase family -0.0 8.1 1
DUF2337 Uncharacterized protein conserved in 0.3 8.4 1
FlgD Flagellar hook capping protein 0.7 9.2 1
Glyco_hydro_2 Glycosyl hydrolases family 2, immunog -0.3 9.3 1
Gp5_C Gp5 C-terminal repeat (3 copies) 2.8 9.5 3
Secretin_N_2 Secretin N-terminal domain 1.0 9.6 1
CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISP -0.5 9.6 1
DUF2020 Domain of unknown function (DUF2020) 0.0 9.7 1
DUF801 C. elegans protein of unknown functio 2.1 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FMC1 1/1 1 18 [. 1 17 [. 1.1 2.7
NUDIX-like 1/1 137 148 .. 86 97 .] 3.4 2.5
UPF0164 1/1 237 257 .. 322 345 .] 0.3 5.3
Cadherin 1/7 315 335 .. 80 107 .] 0.6 19
Urm1 1/1 429 437 .. 95 103 .. -1.6 6.3
Cadherin 2/7 432 450 .. 89 107 .] 5.3 0.82
RFX1_trans_act 1/1 432 458 .. 1 27 [. 0.7 7.5
DUF1174 1/1 471 495 .. 1 26 [] 3.5 6.8
Nup133_N 1/1 475 503 .. 1 36 [. 6.7 0.034
BNR 1/1 521 530 .. 1 10 [. 6.2 1.6
HYR 1/3 585 604 .. 66 86 .] 2.6 3.9
Phage_tail_3 1/1 599 615 .. 152 168 .] 4.1 1.3
CorC_HlyC 1/1 649 666 .. 1 18 [. 2.1 8.1
MNNL 1/1 718 733 .. 68 83 .] 2.7 4.9
CbiD 1/1 719 729 .. 295 305 .] 1.4 4.1
Calici_MSP 1/1 722 734 .. 160 172 .] 0.8 5.7
GBS_Bsp-like 1/1 756 776 .. 43 64 .. 2.6 3.3
DUF1396 1/1 815 826 .. 1 14 [. -0.8 6.3
Phycobilisome 1/1 890 907 .. 1 18 [. 1.7 4.5
RAP-1 1/1 890 901 .. 1 12 [. 2.0 2.9
A2M_N_2 1/1 975 991 .. 146 162 .] 3.9 1.7
Sipho_tail 1/1 977 985 .. 1 9 [. 0.7 1.9
DUF2134 1/1 1024 1069 .. 1 45 [. 2.8 2.9
MspA 1/2 1030 1051 .. 1 27 [. 2.3 3.4
ChiC 1/1 1111 1121 .. 185 195 .] 1.3 4.5
DUF801 1/1 1134 1161 .. 1 29 [] 2.1 10
NgoMIV_restric 1/1 1171 1178 .. 277 284 .] -0.0 7.9
Mu-like_GpL 1/1 1217 1251 .. 128 160 .. 4.0 0.16
DUF1522 1/1 1221 1231 .. 108 118 .] 4.6 0.86
FlgD 1/1 1271 1312 .. 100 155 .] 0.7 9.2
Phage_Capsid_P3 1/1 1323 1342 .. 375 394 .] 2.4 0.75
Corona_M 1/1 1327 1336 .. 221 230 .] 0.0 8.1
Pas_Saposin 1/1 1337 1358 .. 52 76 .] 2.3 5.8
DUF1320 1/1 1341 1353 .. 1 13 [. 1.5 7.9
DUF1841 1/1 1354 1363 .. 55 64 .. 4.2 1.1
DUF1659 1/1 1361 1379 .. 1 19 [. 2.5 6.9
DUF802 1/1 1372 1384 .. 1 13 [. 3.2 6.2
HMD 1/1 1469 1484 .. 77 94 .. 3.7 1.3
MOFRL 1/2 1537 1543 .. 115 121 .] 3.9 2.3
DUF883 1/1 1583 1601 .. 4 22 .. 2.8 5.8
RCC1 1/1 1598 1615 .. 51 68 .] 2.3 5.9
PKD 1/3 1628 1642 .. 77 92 .] 1.4 6.9
YaeQ 1/2 1637 1655 .. 158 176 .] 6.1 0.14
Baculo_p74_N 1/1 1646 1657 .. 297 308 .] 0.6 5.7
Cofilin_ADF 1/1 1678 1700 .. 116 145 .] 1.3 7.9
YbbR 1/2 1761 1789 .. 60 93 .] 4.9 0.94
Big_3 1/3 1762 1777 .. 52 70 .] 0.3 34
Big_3 2/3 1780 1791 .. 59 70 .] 1.7 14
YbbR 2/2 1824 1856 .. 53 93 .] 7.4 0.18
DBI_PRT 1/1 1836 1854 .. 327 345 .] 1.2 1.6
Peptidase_S8 1/1 1849 1871 .. 330 352 .] -0.0 8.1
Rep_fac_C 1/1 1860 1876 .. 76 92 .] 2.5 5.1
MOSP_C 1/1 1878 1885 .. 1 16 [. 0.4 4.9
Gp5_C 1/3 1893 1900 .. 1 8 [. 0.5 50
Prox1 1/1 1909 1947 .. 1 39 [. -0.7 2.3
DUF2020 1/1 1925 1954 .. 115 144 .] 0.0 9.7
DUF77 1/1 1927 1946 .. 1 21 [. 7.7 0.15
PhoPQ_related 1/1 1959 1972 .. 1 14 [. -0.4 1.4
SHD1 1/1 1960 1972 .. 58 70 .] 4.2 1.5
DUF1391 1/1 1969 1993 .. 1 24 [. 2.7 5.4
DUF2026 1/1 1986 2000 .. 133 147 .. 0.8 2.5
Glyco_hydro_2 1/1 1993 2005 .. 1 13 [. -0.3 9.3
Catalase 1/1 2100 2118 .. 1 19 [. 0.1 7.6
DUF2061 1/1 2211 2236 .. 17 42 .. 2.8 7.9
PKD 2/3 2215 2231 .. 75 92 .] 0.1 17
Cohesin 1/2 2258 2292 .. 130 164 .] 1.2 8.5
HYR 2/3 2314 2332 .. 67 86 .] 2.6 3.7
Cadherin 3/7 2316 2333 .. 81 107 .] 0.7 17
DUF2418 1/1 2338 2348 .. 100 110 .] 2.6 4
Cellulase 1/1 2383 2410 .. 347 378 .] -0.6 8
Cadherin 4/7 2418 2427 .. 98 107 .] 0.6 18
DUF2009 1/1 2441 2452 .. 1 12 [. 0.4 4.5
PilS 1/1 2462 2475 .. 145 161 .] 0.9 7.1
DUF402 1/1 2486 2502 .. 1 18 [. 5.2 1.3
HYR 3/3 2503 2527 .. 60 86 .] 1.1 11
Gp5_C 2/3 2505 2528 .. 1 24 [] 2.1 16
Cadherin 5/7 2513 2528 .. 92 107 .] 6.1 0.5
Adeno_shaft 1/2 2574 2592 .. 12 30 .] 3.5 8.9
MOFRL 2/2 2606 2612 .. 115 121 .] 0.5 18
Big_3 3/3 2616 2635 .. 54 70 .] 3.0 6.3
Pox_I1 1/1 2654 2675 .. 291 312 .] 5.1 0.32
PTR2 1/1 2697 2724 .. 402 429 .] 0.6 5.4
DUF436 1/1 2719 2739 .. 1 21 [. 0.9 3.7
DUF2381 1/1 2763 2795 .. 273 306 .] 3.6 0.87
DUF490 1/1 2789 2853 .. 1 68 [. 4.0 0.65
Arylsulfotrans 1/1 2799 2831 .. 1 33 [. 2.3 1.2
DUF2337 1/1 2808 2838 .. 109 140 .. 0.3 8.4
Gp5_C 3/3 2810 2821 .. 14 24 .] 0.2 61
YaeQ 2/2 2810 2822 .. 164 176 .] 1.6 3.4
AsmA 1/1 2815 2832 .. 746 763 .] -0.6 5.9
Adeno_shaft 2/2 2824 2840 .. 1 17 [. 3.1 11
MspA 2/2 2825 2854 .. 202 232 .] 1.5 5.4
GHMP_kinases_C 1/1 2830 2867 .. 51 93 .] 6.9 0.2
Peptidase_M4_C 1/1 2859 2867 .. 1 9 [. 3.3 0.85
CBM_6 1/1 2864 2891 .. 1 28 [. 1.3 5.6
Cadherin 6/7 2874 2901 .. 76 107 .] 8.1 0.13
Viral_protease 1/1 2891 2905 .. 317 331 .] 1.8 2.9
Secretin_N_2 1/1 2916 2929 .. 92 107 .] 1.0 9.6
DUF1257 1/1 2917 2925 .. 103 111 .] 2.3 6.2
DUF1869 1/1 2959 2975 .. 1 17 [. 2.4 0.41
gerPA 1/2 2984 3015 .. 39 75 .] 4.1 1.2
Cohesin 2/2 3014 3058 .. 112 164 .] 0.4 15
Crinivirus_P26 1/1 3024 3035 .. 216 227 .] 4.3 0.13
Antig_Caf1 1/1 3101 3111 .. 126 136 .] 1.8 2.6
Cadherin 7/7 3103 3130 .. 76 107 .] 2.8 4.3
gerPA 2/2 3108 3117 .. 66 75 .] 0.1 20
PKD 3/3 3118 3129 .. 80 92 .] 2.7 2.8
Cache_2 1/1 3168 3177 .. 86 95 .] 5.3 1.1
AMH_N 1/1 3253 3277 .. 1 26 [. 1.1 2
CRISPR_Cse1 1/1 3274 3299 .. 528 557 .] -0.5 9.6
DUF2373 1/1 3286 3297 .. 84 95 .] 4.7 1.6
Serglycin 1/1 3339 3351 .. 142 154 .] 0.6 7.7
Alignments of top-scoring domains:
FMC1: domain 1 of 1, from 1 to 18: score 1.1, E = 2.7
*->Msaat.kttsllslYRsL<-*
M+ +++ t+++++ R+L
gi|1179244 1 MATEMkNHTNPKQTLRAL 18
NUDIX-like: domain 1 of 1, from 137 to 148: score 3.4, E = 2.5
*->glaarArqLlhW<-*
+laarA qLl W
gi|1179244 137 QLAARADQLLGW 148
UPF0164: domain 1 of 1, from 237 to 257: score 0.3, E = 5.3
*->egnasqlvrasaGaEiqilsvrld<-*
++ ++ + +Ga iq + vrl
gi|1179244 237 TMVVQ---AQEGGATIQTTDVRLN 257
Cadherin: domain 1 of 7, from 315 to 335: score 0.6, E = 19
CS E----.........S---EEEE--EEE-
*->eAtDadpllasgggpplsstatvtitVl<-*
+++D+ g s+atvti V
gi|1179244 315 KVMDS-------QGGTSASYATVTIVVA 335
Urm1: domain 1 of 1, from 429 to 437: score -1.6, E = 6.3
CS C-B--TTEE
*->dYvLedgDk<-*
dY+++dgD+
gi|1179244 429 DYQIQDGDT 437
Cadherin: domain 2 of 7, from 432 to 450: score 5.3, E = 0.82
CS .....S---EEEE--EEE-
*->asgggpplsstatvtitVl<-*
++ g ++l++t+tv+i ++
gi|1179244 432 IQDGDTGLTTTGTVNIVLT 450
RFX1_trans_act: domain 1 of 1, from 432 to 458: score 0.7, E = 7.5
*->mqsSeTgadstatVaqqLqvsaaaqsv<-*
q Tg +t+tV L +s aa +v
gi|1179244 432 IQDGDTGLTTTGTVNIVLTPSNAAAPV 458
DUF1174: domain 1 of 1, from 471 to 495: score 3.5, E = 6.8
*->ssEetttsAvtEasgEEtttsAvtEa<-*
+E+ ttsA t s + +Av+
gi|1179244 471 -AEDNTTSAGTSVSTLLSRLAAVVTD 495
Nup133_N: domain 1 of 1, from 475 to 503: score 6.7, E = 0.034
*->tesskykaynVskLpaslpvlvseAltdaeddplsg<-*
t+s+ ++Vs+L+++l+++v + a+d+ +++
gi|1179244 475 TTSAG---TSVSTLLSRLAAVVTD----ADDNSYYT 503
BNR: domain 1 of 1, from 521 to 530: score 6.2, E = 1.6
CS EEESSTTSSE
*->yyStDgGkTW<-*
yS D G TW
gi|1179244 521 EYSVDAGVTW 530
HYR: domain 1 of 3, from 585 to 604: score 2.6, E = 3.9
*->tYtatDnaGNeAdsCtFtVtV<-*
t a D++ N A s+t V+V
gi|1179244 585 TFRAWDQSDNFA-SGTTAVNV 604
Phage_tail_3: domain 1 of 1, from 599 to 615: score 4.1, E = 1.3
*->tvtvtlSlrgrpTryaa<-*
t++v++S+ g++T y++
gi|1179244 599 TTAVNVSVNGGTTAYST 615
CorC_HlyC: domain 1 of 1, from 649 to 666: score 2.1, E = 8.1
*->daigdgtflvdGtarLed<-*
+a+ dg++++dGt+++++
gi|1179244 649 VALPDGDVIADGTVDVAL 666
MNNL: domain 1 of 1, from 718 to 733: score 2.7, E = 4.9
*->GsgvTPVLGgNsfslt<-*
G++vT VLG+N+ +
gi|1179244 718 GEAVTLVLGANTGHSS 733
CbiD: domain 1 of 1, from 719 to 729: score 1.4, E = 4.1
CS -----------
*->elVteiqgadT<-*
e+Vt+++ga+T
gi|1179244 719 EAVTLVLGANT 729
Calici_MSP: domain 1 of 1, from 722 to 734: score 0.8, E = 5.7
*->avnlGhnPgsSsv<-*
+++lG+n+g+Ss
gi|1179244 722 TLVLGANTGHSSK 734
GBS_Bsp-like: domain 1 of 1, from 756 to 776: score 2.6, E = 3.3
*->LkWYtAtkqgDGkytvtikaaN<-*
L WY+A + DG++t+t+ +++
gi|1179244 756 LAWYPA-QNFDGTATITFSLSD 776
DUF1396: domain 1 of 1, from 815 to 826: score -0.8, E = 6.3
*->DAaqlAElqeSada<-*
D+a++ l++ ada
gi|1179244 815 DPAAI--LEDTADA 826
Phycobilisome: domain 1 of 1, from 890 to 907: score 1.7, E = 4.5
CS HHHHHHHHGGT------H
*->TkviaaADaeGrYlSgge<-*
+ +++ADa rYl+ +
gi|1179244 890 SATLLSADASVRYLGEAD 907
RAP-1: domain 1 of 1, from 890 to 901: score 2.0, E = 2.9
*->tkTLlqaDevvn<-*
+ TLl aD++v+
gi|1179244 890 SATLLSADASVR 901
A2M_N_2: domain 1 of 1, from 975 to 991: score 3.9, E = 1.7
*->egalVtLaAVDegvLlL<-*
e+a+Vt VD g+L++
gi|1179244 975 EDATVTFDGVDAGLLVI 991
Sipho_tail: domain 1 of 1, from 977 to 985: score 0.7, E = 1.9
*->asviFNGvd<-*
a+v+F+Gvd
gi|1179244 977 ATVTFDGVD 985
DUF2134: domain 1 of 1, from 1024 to 1069: score 2.8, E = 2.9
*->AAAqrlsdgsaaaanssaaaaaaAaaaaarngf........gggdla
A A++ +dg++ + + +aA+ +aa++g+ +++ + + +d
gi|1179244 1024 AVAGEVGDGTD----TLTVTDTAANITAALDGLvytpeadlDTDD-- 1064
lslsve<-*
+l+++
gi|1179244 1065 -TLTIT 1069
MspA: domain 1 of 2, from 1030 to 1051: score 2.3, E = 3.4
*->PDGwevGpglTVgakDEsavvvPpLtt<-*
+DG+ T++ +D++a++ ++L++
gi|1179244 1030 GDGTD-----TLTVTDTAANITAALDG 1051
ChiC: domain 1 of 1, from 1111 to 1121: score 1.3, E = 4.5
*->lvdataGtGPG<-*
l+d t+G++PG
gi|1179244 1111 LEDVTSGNNPG 1121
DUF801: domain 1 of 1, from 1134 to 1161: score 2.1, E = 10
*->mtvssDsttaGPsstAtnsAssEtPfvse<-*
v s st G + t As E ++
gi|1179244 1134 -DVDSQSTGQGIAITGVGGASGEGSWSYK 1161
NgoMIV_restric: domain 1 of 1, from 1171 to 1178: score -0.0, E = 7.9
*->DLPLDlav<-*
DLP Dlav
gi|1179244 1171 DLPADLAV 1178
Mu-like_GpL: domain 1 of 1, from 1217 to 1251: score 4.0, E = 0.16
*->gGkrvqvpVtsGdtA..aavAdaLkaaInAdpDlP<-*
+G+r + Vt G+tA +a++Ad L+ aI+A+ D+P
gi|1179244 1217 AGERADLTVTGGATAfsAVLADGLAQAITAVNDAP 1251
DUF1522: domain 1 of 1, from 1221 to 1231: score 4.6, E = 0.86
*->ADLsItGtgdl<-*
ADL++tG +++
gi|1179244 1221 ADLTVTGGATA 1231
FlgD: domain 1 of 1, from 1271 to 1312: score 0.7, E = 9.2
*->d.dgntivyldgggggetGsvsggvevgLpsaAdevtvtikDaaGqv
d+d+ + ++l+g+ ++ + ve ++++A++vtvt + a+G++
gi|1179244 1271 DtDAGA-IVLSGD------TAPLAVES-VDGSAESVTVTFRVATGTL 1309
vnvelVrtid<-*
++d
gi|1179244 1310 -------SLD 1312
Phage_Capsid_P3: domain 1 of 1, from 1323 to 1342: score 2.4, E = 0.75
CS EEEEEESB-----------X
*->GYEYFtsRtELvnAGtistt<-*
GY++ tELv Gti+
gi|1179244 1323 GYDFNATETELVLTGTIADI 1342
Corona_M: domain 1 of 1, from 1327 to 1336: score 0.0, E = 8.1
*->vltdtekLlh<-*
++t+te++l+
gi|1179244 1327 NATETELVLT 1336
Pas_Saposin: domain 1 of 1, from 1337 to 1358: score 2.3, E = 5.8
*->GkledseainnAVdkavalLEdpey<-*
G + d in+A d a al +p+
gi|1179244 1337 GTIAD---INDALDEADALIYTPDD 1358
DUF1320: domain 1 of 1, from 1341 to 1353: score 1.5, E = 7.9
*->vveqALaDAsaeI<-*
+++AL++A+a+I
gi|1179244 1341 DINDALDEADALI 1353
DUF1841: domain 1 of 1, from 1354 to 1363: score 4.2, E = 1.1
*->YlPEdGetNP<-*
Y+P+dGetNP
gi|1179244 1354 YTPDDGETNP 1363
DUF1659: domain 1 of 1, from 1361 to 1379: score 2.5, E = 6.9
*->ttpldssLvLkyqtGldas<-*
t+pld +L +++++G+ +s
gi|1179244 1361 TNPLDDTLTIVVNDGVAES 1379
DUF802: domain 1 of 1, from 1372 to 1384: score 3.2, E = 6.2
*->lsagFeasaaava<-*
+++g++ s+++va
gi|1179244 1372 VNDGVAESTQTVA 1384
HMD: domain 1 of 1, from 1469 to 1484: score 3.7, E = 1.3
*->dSMnfgdrqdteiLpaAL<-*
dSM ++ +++ +L+ AL
gi|1179244 1469 DSMQLLGSAE--DLNNAL 1484
MOFRL: domain 1 of 2, from 1537 to 1543: score 3.9, E = 2.3
CS -S----E
*->TGTNVND<-*
T+TNVND
gi|1179244 1537 TLTNVND 1543
DUF883: domain 1 of 1, from 1583 to 1601: score 2.8, E = 5.8
*->addlrsLlddlEeLLrsta<-*
+ddlr+L+++ E+LL++ta
gi|1179244 1583 QDDLRTLANESEDLLEDTA 1601
RCC1: domain 1 of 1, from 1598 to 1615: score 2.3, E = 5.9
CS SSSCEEEEEEESSEEEEE
*->lsekVvsvasGgqHtval<-*
++++ ++ +G+ Htv +
gi|1179244 1598 EDTAITDADAGDTHTVYV 1615
PKD: domain 1 of 3, from 1628 to 1642: score 1.4, E = 6.9
CS EETTCEEEEEEEEEEE
*->sngvgsasattttvtV<-*
s+++g+++a tvtV
gi|1179244 1628 SDAAGLSAAG-GTVTV 1642
YaeQ: domain 1 of 2, from 1637 to 1655: score 6.1, E = 0.14
*->DGqvwlsdddgsvevtpev<-*
+G+v+++++ ++++ tpe+
gi|1179244 1637 GGTVTVDNGTNQITYTPEE 1655
Baculo_p74_N: domain 1 of 1, from 1646 to 1657: score 0.6, E = 5.7
*->ntklvYtAevGF<-*
+++++Yt e+GF
gi|1179244 1646 TNQITYTPEEGF 1657
Cofilin_ADF: domain 1 of 1, from 1678 to 1700: score 1.3, E = 7.9
CS TT...CEEEEECS..TCCCCHHHHHHHHHH
*->ggdqKiqvevqatIgDasdlseealkeklk<-*
++ iqv v +t +d s+ea++++++
gi|1179244 1678 KS---IQVNVVNT----VDDSPEAVDDRVT 1700
YbbR: domain 1 of 2, from 1761 to 1789: score 4.9, E = 0.94
*->GehsvsvtvsllapdgnvevevnvtiPstvtVti<-*
G++++s +v ++ g+++ Ps+ tVt+
gi|1179244 1761 GTVTFSYQVQEKNAVGVGTGQ-----PSEATVTV 1789
Big_3: domain 1 of 3, from 1762 to 1777: score 0.3, E = 34
*->tVTytYkGqpvtatftVtV<-*
tVT++Y+ v+++ V V
gi|1179244 1762 TVTFSYQ---VQEKNAVGV 1777
Big_3: domain 2 of 3, from 1780 to 1791: score 1.7, E = 14
*->GqpvtatftVtV<-*
Gqp +at+tV+V
gi|1179244 1780 GQPSEATVTVEV 1791
YbbR: domain 2 of 2, from 1824 to 1856: score 7.4, E = 0.18
*->DlsglkeGehsvsvtvsllapdgnvevevnvtiPstvtVti<-*
D+++ +e s++++v+++++ n+++ ++ V+i
gi|1179244 1824 DMDDPTE---STTRNVKVVVSSSNGMLT-----LNSAGVNI 1856
DBI_PRT: domain 1 of 1, from 1836 to 1854: score 1.2, E = 1.6
CS HHHHHHHHHHS-BGGGGT-
*->VraAiaihneMaTFaeAgV<-*
V+ ++ n+M T +AgV
gi|1179244 1836 VKVVVSSSNGMLTLNSAGV 1854
Peptidase_S8: domain 1 of 1, from 1849 to 1871: score -0.0, E = 8.1
CS HHHHHHCSBGCTTTTTSTSSSSE
RF xxxxxxxxxxxxxxxxxxxxxxx
*->raalentatslggagisnlfGyG<-*
++ + ++ts++++++s+l+ yG
gi|1179244 1849 LNSAGVNITSGANGSSSSLTLYG 1871
Rep_fac_C: domain 1 of 1, from 1860 to 1876: score 2.5, E = 5.1
CS HTTT--HHHHHHHHHHH
*->sdGaseyiQLsaLlaai<-*
++G s+ + L++ la++
gi|1179244 1860 ANGSSSSLTLYGTLAKL 1876
MOSP_C: domain 1 of 1, from 1878 to 1885: score 0.4, E = 4.9
*->DALLFHVTINAYtlqw<-*
DAL+ tlq+
gi|1179244 1878 DALA--------TLQY 1885
Gp5_C: domain 1 of 3, from 1893 to 1900: score 0.5, E = 50
CS S-EEEEES
*->GnesltVk<-*
Gn++ltV+
gi|1179244 1893 GNDTLTVM 1900
Prox1: domain 1 of 1, from 1909 to 1947: score -0.7, E = 2.3
CS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
*->mpdhdstlllsrqtkrrrvdigvkrtvgtaaalfakaka<-*
+ +++s+ l r t + vdi+v ++a ak+
gi|1179244 1909 GEANGSAVLAQRLTASGHVDITVTPVNDEPSAAQDVAKT 1947
DUF2020: domain 1 of 1, from 1925 to 1954: score 0.0, E = 9.7
*->devAvvvftnqdqslKAqliAeeviknLgL<-*
++v + v+ d Aq +A++v++n L
gi|1179244 1925 GHVDITVTPVNDEPSAAQDVAKTVVQNTPL 1954
DUF77: domain 1 of 1, from 1927 to 1946: score 7.7, E = 0.15
CS EEEEEEECS-SSS--HHHHHH
*->vdisviPlGtggtSvSkyVAa<-*
vdi+v+P+ +++S + VA+
gi|1179244 1927 VDITVTPV-NDEPSAAQDVAK 1946
PhoPQ_related: domain 1 of 1, from 1959 to 1972: score -0.4, E = 1.4
*->LkdYvekledqplk<-*
L dYv+++e++++k
gi|1179244 1959 LLDYVDRVEGDSVK 1972
SHD1: domain 1 of 1, from 1960 to 1972: score 4.2, E = 1.5
*->LeYVEkvTGksle<-*
L+YV +v G s+
gi|1179244 1960 LDYVDRVEGDSVK 1972
DUF1391: domain 1 of 1, from 1969 to 1993: score 2.7, E = 5.4
*->etldlGnnEslvlG.vFPnqDGtFt<-*
+ + +Gn ++ G+ n+DGtFt
gi|1179244 1969 DSVKVGNFTQPQHGeLILNKDGTFT 1993
DUF2026: domain 1 of 1, from 1986 to 2000: score 0.8, E = 2.5
*->LkqsGDFfyrPnmdl<-*
L ++G F y+P+md+
gi|1179244 1986 LNKDGTFTYIPDMDV 2000
Glyco_hydro_2: domain 1 of 1, from 1993 to 2005: score -0.3, E = 9.3
CS CEEEEEEEEEEBT
*->thIdDitVtTdfd<-*
t+I D +V++++d
gi|1179244 1993 TYIPDMDVKGVVD 2005
Catalase: domain 1 of 1, from 2100 to 2118: score 0.1, E = 7.6
CS BTTTSCBCSSSSSEEEETT
*->TtnqGaPvadnqnSlTaGp<-*
T +G ++++ S+T+G+
gi|1179244 2100 TPPAGMTIGEDTFSITVGD 2118
DUF2061: domain 1 of 1, from 2211 to 2236: score 2.8, E = 7.9
*->tVaYlLTGsllvagaiAliEPavntV<-*
t+ Y +T sl ++ ++++ ++vn V
gi|1179244 2211 TIKYTVTDSLGASSKVGMVTVMVNSV 2236
PKD: domain 2 of 3, from 2215 to 2231: score 0.1, E = 17
CS EEEETTCEEEEEEEEEEE
*->tvsngvgsasattttvtV<-*
tv+++ g++s+ vtV
gi|1179244 2215 TVTDSLGASSKV-GMVTV 2231
Cohesin: domain 1 of 2, from 2258 to 2292: score 1.2, E = 8.5
CS TTSTCEECCEEEEECCCTCE-C-EEEE.E-EEES-
*->lSLttpvsisslgafddntlteisvvtatnGsvtV<-*
+ L ++ ++ ++ga+++++l+++svv++ G v
gi|1179244 2258 AALSNDHDFNDTGAYGGEGLAIASVVQPEHGTVSY 2292
HYR: domain 2 of 3, from 2314 to 2332: score 2.6, E = 3.7
*->YtatDnaGNeAdsCtFtVtV<-*
Yt+ D+ G +A t+t++V
gi|1179244 2314 YTVVDSGGKTA-MATVTINV 2332
Cadherin: domain 3 of 7, from 2316 to 2333: score 0.7, E = 17
CS ----.........S---EEEE--EEE-
*->AtDadpllasgggpplsstatvtitVl<-*
++D++ ++++ atvti+V
gi|1179244 2316 VVDSG---------GKTAMATVTINVA 2333
DUF2418: domain 1 of 1, from 2338 to 2348: score 2.6, E = 4
*->svlkrDvavda<-*
+++ rD++v++
gi|1179244 2338 NPVARDDMVNT 2348
Cellulase: domain 1 of 1, from 2383 to 2410: score -0.6, E = 8
CS HHHHHHHHHHCHHTTT-EEEEEEESSSSSTTS
*->aeayldyakdrkagggiswvnWdngpksegtg<-*
+ y++ ++i+ +nW++++ + t
gi|1179244 2383 QVVYMSNGVL----KYIPQSNWSGTDTFSYTV 2410
Cadherin: domain 4 of 7, from 2418 to 2427: score 0.6, E = 18
CS EEEE--EEE-
*->statvtitVl<-*
sta+vt++V
gi|1179244 2418 STAMVTVNVA 2427
DUF2009: domain 1 of 1, from 2441 to 2452: score 0.4, E = 4.5
*->erakyIPLRLty<-*
++a+++PLR+++
gi|1179244 2441 TTAEDVPLRINV 2452
PilS: domain 1 of 1, from 2462 to 2475: score 0.9, E = 7.1
*->taDnGrtGtNTltfTsn<-*
++D+G +NTl+++s+
gi|1179244 2462 DSDGG---KNTLALVSF 2475
DUF402: domain 1 of 1, from 2486 to 2502: score 5.2, E = 1.3
*->redGdyalsffpPegkwy<-*
+++Gd l+f p g w+
gi|1179244 2486 IDNGDGTLTFTP-MGDWH 2502
HYR: domain 3 of 3, from 2503 to 2527: score 1.1, E = 11
*->GEettVtYtatDnaGNeAdsCtFtVtV<-*
G +t Yt+ + G +A +t+t+tV
gi|1179244 2503 G-TTNFAYTVKGSGGLTA-NGTVTITV 2527
Gp5_C: domain 2 of 3, from 2505 to 2528: score 2.1, E = 16
CS S-EEEEESS-EEEEESSEEEEEES
*->GnesltVkGnrtvtVgGnqTtsVg<-*
n +tVkG++ +t +G++T++V
gi|1179244 2505 TNFAYTVKGSGGLTANGTVTITVT 2528
Cadherin: domain 5 of 7, from 2513 to 2528: score 6.1, E = 0.5
CS ..S---EEEE--EEE-
*->ggpplsstatvtitVl<-*
g+ +l++ +tvtitV+
gi|1179244 2513 GSGGLTANGTVTITVT 2528
Adeno_shaft: domain 1 of 2, from 2574 to 2592: score 3.5, E = 8.9
CS EEE-TS-EEE-B-TTEEEE
*->LtvtnnaLalklGagLtvd<-*
Ltv n++L+ + gLt+
gi|1179244 2574 LTVGNGTLTMLSTEGLTFI 2592
MOFRL: domain 2 of 2, from 2606 to 2612: score 0.5, E = 18
CS -S----E
*->TGTNVND<-*
T+TN+N+
gi|1179244 2606 TRTNLNS 2612
Big_3: domain 3 of 3, from 2616 to 2635: score 3.0, E = 6.3
*->TytYkGq...pvtatftVtV<-*
T tY+G+ + + + t+tVtV
gi|1179244 2616 TMTYLGNahyNGQDTITVTV 2635
Pox_I1: domain 1 of 1, from 2654 to 2675: score 5.1, E = 0.32
*->invskVVeyLtVstvkiesleE<-*
+nv+ VV+ +Vs v + s +E
gi|1179244 2654 VNVASVVDAPIVSDVAVNSGVE 2675
PTR2: domain 1 of 1, from 2697 to 2724: score 0.6, E = 5.4
*->tigilefapdalpssmkslwtllsaaas<-*
t+g+++ +++alps+m + +l+ a ++
gi|1179244 2697 TAGLAQIKITALPSAMAGTLMLGDANVA 2724
DUF436: domain 1 of 1, from 2719 to 2739: score 0.9, E = 3.7
*->eqlqqaleElleqagLkkGql<-*
+++ a+ +++++++L +Gql
gi|1179244 2719 GDANVAVGDVVTISQLEAGQL 2739
DUF2381: domain 1 of 1, from 2763 to 2795: score 3.6, E = 0.87
*->eapplsadgwLgpFtLeLwdadGlRtltlpn.Vrf<-*
+ap++s+++ + FtL + a+ +tl+lpn+V++
gi|1179244 2763 PAPTWSDEA--ATFTLQVAAANDAPTLSLPNtVTT 2795
DUF490: domain 1 of 1, from 2789 to 2853: score 4.0, E = 0.65
*->ldglsatglgggGtltasGtl..dlaadlpadLtikgvadnlrlidp
l ++ t + + ++++G + d +++++ +t++ +n +l++
gi|1179244 2789 LPNTVTT--AEDSPVSITGIAvaDV-DGGNVTVTVQV--ENGALTLN 2830
pllratvsG....dltltgtppsllkg<-*
pl+ +tvsG++++++t+ gt + +
gi|1179244 2831 PLAGVTVSGsgsdTITVVGT----TTN 2853
Arylsulfotrans: domain 1 of 1, from 2799 to 2831: score 2.3, E = 1.2
*->salaiggaagakvtGtsssavnqGqlGaVlvnP<-*
s +i g a a+v+G +q+++Ga ++nP
gi|1179244 2799 SPVSITGIAVADVDGGNVTVTVQVENGALTLNP 2831
DUF2337: domain 1 of 1, from 2808 to 2838: score 0.3, E = 8.4
*->adddgqapgllvsydpdrgrlvlvplgapppp<-*
++d + ++++v++ ++g+l+l+pl++ +++
gi|1179244 2808 VADVDG-GNVTVTVQVENGALTLNPLAGVTVS 2838
Gp5_C: domain 3 of 3, from 2810 to 2821: score 0.2, E = 61
CS EES SEEEEEES
*->tVg.GnqTtsVg<-*
+V++Gn+T++V
gi|1179244 2810 DVDgGNVTVTVQ 2821
YaeQ: domain 2 of 2, from 2810 to 2822: score 1.6, E = 3.4
*->sdddgsvevtpev<-*
++d+g+v+vt +v
gi|1179244 2810 DVDGGNVTVTVQV 2822
AsmA: domain 1 of 1, from 2815 to 2832: score -0.6, E = 5.9
*->rltislnlqrGvvtlndv<-*
+ t+++ ++G++tln++
gi|1179244 2815 NVTVTVQVENGALTLNPL 2832
Adeno_shaft: domain 2 of 2, from 2824 to 2840: score 3.1, E = 11
CS S--EEE-B-TTEEE-TS
*->nnsLtlntgpGLtvtnn<-*
n++Ltln +G tv+++
gi|1179244 2824 NGALTLNPLAGVTVSGS 2840
MspA: domain 2 of 2, from 2825 to 2854: score 1.5, E = 5.4
*->GyafaRSYavltvsTddsskvvtyYGqPfsv<-*
G ++ + a +tvs+ s+ + t++G++ +v
gi|1179244 2825 GALTLNPLAGVTVSGSGSDTI-TVVGTTTNV 2854
GHMP_kinases_C: domain 1 of 1, from 2830 to 2867: score 6.9, E = 0.2
CS TST.TSEEEEEETTSSSSEEEEEETEGGGHHHHHHHHHHHHHH
*->aesEGalgaglsGaGgGptvfalfddeeeaeevlealrkrgkn<-*
+ ++g+ +sG+G ++t+ +++ + +++ vl+ lr g++
gi|1179244 2830 N---PLAGVTVSGSG-SDTITVVG-TTTNVNTVLAGLRYQGES 2867
Peptidase_M4_C: domain 1 of 1, from 2859 to 2867: score 3.3, E = 0.85
CS T---SSCCH
*->aGLvYegqS<-*
aGL Y+g+S
gi|1179244 2859 AGLRYQGES 2867
CBM_6: domain 1 of 1, from 2864 to 2891: score 1.3, E = 5.6
CS ETTG-SEEESTEEEEEES.TT.SSEEEE
*->eAEtydkqsGvstektttgygGgGyavg<-*
+ E+y + ++ t++ ++g++GgG a++
gi|1179244 2864 QGESYYNGADTLTVSVNDGANGGGEALT 2891
Cadherin: domain 6 of 7, from 2874 to 2901: score 8.1, E = 0.13
CS --EEE----.........S---EEEE--EEE-
*->eLtveAtDadpllasgggpplsstatvtitVl<-*
+Ltv++ D+ a+ggg +l+ ++vti+++
gi|1179244 2874 TLTVSVNDG----ANGGGEALTVNGSVTINIT 2901
Viral_protease: domain 1 of 1, from 2891 to 2905: score 1.8, E = 2.9
*->vvggsktetvkPVas<-*
+v gs+t ++ PVa+
gi|1179244 2891 TVNGSVTINITPVAN 2905
Secretin_N_2: domain 1 of 1, from 2916 to 2929: score 1.0, E = 9.6
*->LtaPgdGryslStsta<-*
L+ +dG+ +++++++
gi|1179244 2916 LN--EDGSITITQAQM 2929
DUF1257: domain 1 of 1, from 2917 to 2925: score 2.3, E = 6.2
*->neDGsirLV<-*
neDGsi+++
gi|1179244 2917 NEDGSITIT 2925
DUF1869: domain 1 of 1, from 2959 to 2975: score 2.4, E = 0.41
*->nnkatyllTVTNNsNGV<-*
nn + y+ T N NGV
gi|1179244 2959 NNDGSYTYTPAANFNGV 2975
gerPA: domain 1 of 2, from 2984 to 3015: score 4.1, E = 1.2
*->aGaGsFNtGdflqtnNgvSaTntfDsDviDQpvigNa<-*
+GaG+ +tG ++ t N v+ D+ + D +++ ++
gi|1179244 2984 NGAGGASTGSVILTVNAVN-----DAPTLDITNVPTL 3015
Cohesin: domain 2 of 2, from 3014 to 3058: score 0.4, E = 15
CS EEEE-SSS-...EE.... TTSTCEECCEEEEECCCTCE-C-EEEE.
*->tFKVksaaatgttfqkqd.lSLttpvsisslgafddntlteisvvta
t+ V+++a+tg+ +lSL+++ ++ + g ++ l+ is+ +
gi|1179244 3014 TLSVNAGATTGI-----AgLSLNDIDVGETAG---GKLLVTISTSA- 3051
CS E-EEES-
tnGsvtV<-*
t+G+ +V
gi|1179244 3052 TDGQLKV 3058
Crinivirus_P26: domain 1 of 1, from 3024 to 3035: score 4.3, E = 0.13
*->GFGGLsLnDiKi<-*
G GLsLnDi +
gi|1179244 3024 GIAGLSLNDIDV 3035
Antig_Caf1: domain 1 of 1, from 3101 to 3111: score 1.8, E = 2.6
CS EEEEEEEEE--
*->tDAvtvtvsnq<-*
tD tv vs q
gi|1179244 3101 TDTLTVAVSDQ 3111
Cadherin: domain 7 of 7, from 3103 to 3130: score 2.8, E = 4.3
CS --EEE----.........S---EEEE--EEE-
*->eLtveAtDadpllasgggpplsstatvtitVl<-*
+Ltv ++D++ + g++ s+tat+ +tV
gi|1179244 3103 TLTVAVSDQG----NTGSTVGSTTATLQVTVN 3130
gerPA: domain 2 of 2, from 3108 to 3117: score 0.1, E = 20
*->viDQpvigNa<-*
v+DQ+++g +
gi|1179244 3108 VSDQGNTGST 3117
PKD: domain 3 of 3, from 3118 to 3129: score 2.7, E = 2.8
CS TCEEEEEEEEEEE
*->vgsasattttvtV<-*
vgs++at ++vtV
gi|1179244 3118 VGSTTAT-LQVTV 3129
Cache_2: domain 1 of 1, from 3168 to 3177: score 5.3, E = 1.1
*->kDpnGkalfv<-*
+DpnG++lfv
gi|1179244 3168 TDPNGDSLFV 3177
AMH_N: domain 1 of 1, from 3253 to 3277: score 1.1, E = 2
*->lrkgtpreetvaleqtlseesgleae<-*
l+ tp ++ va+++ +++e++++ae
gi|1179244 3253 LENATPNTM-VAQLSQPGDERAAPAE 3277
CRISPR_Cse1: domain 1 of 1, from 3274 to 3299: score -0.5, E = 9.6
*->qpddppearaaWqqtArkalrrlAlrlFda<-*
+p++ ++a a+ r++l++ A + ++a
gi|1179244 3274 APAESQRAEAQP----REELAQSAKQVLMA 3299
DUF2373: domain 1 of 1, from 3286 to 3297: score 4.7, E = 1.6
*->RerLiekAkevI<-*
Re+L ++Ak+v+
gi|1179244 3286 REELAQSAKQVL 3297
Serglycin: domain 1 of 1, from 3339 to 3351: score 0.6, E = 7.7
*->LtedsQDlgeddl<-*
L e+ QD ++ l
gi|1179244 3339 LVEQPQDAPQNNL 3351
//