hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 118099183.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|118099183|ref|XP_415535.2|
Accession: [none]
Description: PREDICTED: hypothetical protein [Gallus gallus]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
IQ IQ calmodulin-binding motif 19.0 0.00019 2
cwf21 cwf21 6.7 0.45 1
RGS Regulator of G protein signaling doma 4.1 0.93 1
MIB_HERC2 Mib_herc2 4.8 0.94 1
DUF1183 Protein of unknown function (DUF1183) -0.4 0.97 1
FAD-oxidase_C FAD linked oxidases, C-terminal domai 2.9 1.7 1
TP1 Nuclear transition protein 1 3.1 2.4 1
He_PIG_assoc He_PIG associated, NEW1 domain of bac 3.9 2.8 1
Nebulin Nebulin repeat 4.9 3.1 1
AMP_N Aminopeptidase P, N-terminal domain 1.9 4.4 1
DUF2378 Protein of unknown function (DUF2378) 1.5 5.4 1
Orthopox_N1 Orthopoxvirus N1 protein 0.7 6.4 1
Abhydrolase_4 TAP-like protein 1.3 7.8 1
AFP Insect antifreeze protein repeat 3.7 8.3 1
TT_ORF2a pORF2a truncated protein 0.9 8.8 1
PRD PRD domain 1.7 9.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MIB_HERC2 1/1 38 62 .. 42 69 .] 4.8 0.94
RGS 1/1 53 66 .. 1 14 [. 4.1 0.93
Nebulin 1/1 67 78 .. 1 12 [. 4.9 3.1
He_PIG_assoc 1/1 113 119 .. 23 29 .] 3.9 2.8
Abhydrolase_4 1/1 145 168 .. 1 27 [. 1.3 7.8
TT_ORF2a 1/1 163 170 .. 42 49 .] 0.9 8.8
AFP 1/1 169 177 .. 4 12 .] 3.7 8.3
IQ 1/2 232 250 .. 1 19 [. 11.5 0.033
TP1 1/1 249 269 .. 38 54 .] 3.1 2.4
IQ 2/2 255 269 .. 1 15 [. 7.5 0.49
AMP_N 1/1 277 288 .. 1 12 [. 1.9 4.4
DUF1183 1/1 286 312 .. 362 396 .. -0.4 0.97
DUF2378 1/1 319 330 .. 174 185 .] 1.5 5.4
PRD 1/1 387 399 .. 1 13 [. 1.7 9.4
cwf21 1/1 391 401 .. 36 46 .] 6.7 0.45
FAD-oxidase_C 1/1 481 489 .. 275 283 .] 2.9 1.7
Orthopox_N1 1/1 503 516 .. 100 113 .] 0.7 6.4
Alignments of top-scoring domains:
MIB_HERC2: domain 1 of 1, from 38 to 62: score 4.8, E = 0.94
*->vVqWDtGsrNsYRmGyeGkyDLklvdsa<-*
vV+WD Gs ++ R++ G +D l+ds+
gi|1180991 38 VVEWDEGS-AVPRAA--GRFDHLLADSY 62
RGS: domain 1 of 1, from 53 to 66: score 4.1, E = 0.93
CS -HHHHHCSHH.HHH
*->sfesLLsdqpIGrr<-*
f++LL+d++IG +
gi|1180991 53 RFDHLLADSYIGQE 66
Nebulin: domain 1 of 1, from 67 to 78: score 4.9, E = 3.1
*->DtPeivlAKkna<-*
D+Pe+++A +n+
gi|1180991 67 DSPEMQQAAQNK 78
He_PIG_assoc: domain 1 of 1, from 113 to 119: score 3.9, E = 2.8
*->tSGqRPm<-*
+SG+RPm
gi|1180991 113 ISGERPM 119
Abhydrolase_4: domain 1 of 1, from 145 to 168: score 1.3, E = 7.8
*->sPlmtfGnywaeaplssCagWtPvppv<-*
+P+ G++ ++++ C+gW P +++
gi|1180991 145 HPV--HGAGGSHGVSRHCKGW-PGSRQ 168
TT_ORF2a: domain 1 of 1, from 163 to 170: score 0.9, E = 8.8
*->WPGYGqGs<-*
WPG qGs
gi|1180991 163 WPGSRQGS 170
AFP: domain 1 of 1, from 169 to 177: score 3.7, E = 8.3
*->gsknCteAt<-*
gsk C+++t
gi|1180991 169 GSKECPNCT 177
IQ: domain 1 of 2, from 232 to 250: score 11.5, E = 0.033
CS HHHCHHHHHHHHHHHHHHH
*->rraaikIQaawRGylaRkr<-*
+ a +++Qaa+RGy Rkr
gi|1180991 232 QTATTTMQAAFRGYAERKR 250
TP1: domain 1 of 1, from 249 to 269: score 3.1, E = 2.4
*->KsRKRgDDAn....RnyRsHL<-*
K RKR D +Rn+R HL
gi|1180991 249 KRRKRENDSAaviqRNFRKHL 269
IQ: domain 2 of 2, from 255 to 269: score 7.5, E = 0.49
CS HHHCHHHHHHHHHHH
*->rraaikIQaawRGyl<-*
++a +IQ+ +R +l
gi|1180991 255 NDSAAVIQRNFRKHL 269
AMP_N: domain 1 of 1, from 277 to 288: score 1.9, E = 4.4
*->ipadefaaRRkr<-*
++a+ fa+RR+r
gi|1180991 277 VKAQTFAERRER 288
DUF1183: domain 1 of 1, from 286 to 312: score -0.4, E = 0.97
*->ygrnysntWgrPsyipseesrirswgyssdsgess<-*
+ r++s +W++P++i +++ ds+es+
gi|1180991 286 RERSFSRSWSDPTPIKA--------DSFHDSRESH 312
DUF2378: domain 1 of 1, from 319 to 330: score 1.5, E = 5.4
*->glldaeYrlsWs<-*
g ld++++l W+
gi|1180991 319 GTLDGDFDLNWE 330
PRD: domain 1 of 1, from 387 to 399: score 1.7, E = 9.4
CS HHHHHHHHHHHTS
*->eelleeiekklqi<-*
++leeiekkl+i
gi|1180991 387 DDILEEIEKKLNI 399
cwf21: domain 1 of 1, from 391 to 401: score 6.7, E = 0.45
*->eEIEekVnelR<-*
eEIE+k n++R
gi|1180991 391 EEIEKKLNIYR 401
FAD-oxidase_C: domain 1 of 1, from 481 to 489: score 2.9, E = 1.7
CS T-BBTTCGG
*->kgILNPGKv<-*
k+++NP++v
gi|1180991 481 KNLMNPYRV 489
Orthopox_N1: domain 1 of 1, from 503 to 516: score 0.7, E = 6.4
*->rmiekyfddlmidl<-*
+mie+yfd + l
gi|1180991 503 QMIETYFDFRLYRL 516
//