hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 119484709.fa
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Query sequence: gi|119484709|ref|ZP_01619191.1|
Accession: [none]
Description: Polymorphic membrane protein [Lyngbya sp. PCC 8106]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Calx-beta Calx-beta domain 294.7 2.1e-85 8
HemolysinCabind Hemolysin-type calcium-binding repeat 223.8 1.1e-66 12
PT PT repeat 28.7 1.9e-07 4
Chlam_PMP Chlamydia polymorphic membrane protei 23.4 4.5e-05 5
Rotavirus_VP3 Rotavirus VP3 protein 7.5 0.045 1
Propeptide_C1 Peptidase family C1 propeptide 9.2 0.065 1
Albumin_I Albumin I 6.9 0.23 1
RNase_P_pop3 RNase P subunit Pop3 5.6 0.47 1
2H-phosphodiest Domain of unknown function (DUF1868) 5.2 0.52 1
Phage_coat Phage PP7 coat protein 2.6 0.69 1
TIG IPT/TIG domain 6.4 0.85 2
DUF1888 Domain of unknown function (DUF1888) 4.2 1.1 1
CBM_25 Carbohydrate binding domain (family 2 4.3 1.2 1
tRNA_synt_1c_R1 Glutaminyl-tRNA synthetase, non-speci 2.6 1.3 1
DUF1577 Protein of unknown function (DUF1577) 1.6 1.4 1
I-set Immunoglobulin I-set domain 4.4 1.5 1
Urm1 Urm1 (Ubiquitin related modifier) -0.1 1.6 1
NAGidase beta-N-acetylglucosaminidase 2.1 1.7 1
PLRV_ORF5 Potato leaf roll virus readthrough pr 1.6 1.7 1
DUF1314 Protein of unknown function (DUF1314) 2.4 1.9 1
Pectate_lyase Pectate lyase 2.0 1.9 1
OS-D Insect pheromone-binding family, A10/ 2.4 2.2 1
Cna_B Cna protein B-type domain 2.8 2.5 1
He_PIG Putative Ig domain 3.7 3 1
DUF482 Protein of unknown function, DUF482 1.0 3.1 1
Dicty_CAD Cell-cell adhesion domain 1.3 3.1 1
Luteo_coat Luteovirus coat protein 1.8 3.9 1
RtxA RtxA repeat 4.4 4.1 1
DUF2135 Uncharacterized protein conserved in 3.4 4.3 2
Neur Neuraminidase -0.7 4.3 1
GRIP GRIP domain 3.4 4.5 1
Tash_PEST Tash protein PEST motif 4.6 4.8 2
Fil_haemagg Haemagluttinin repeat 2.7 4.8 1
Prok-TraM Prokaryotic Transcriptional repressor 1.6 4.8 1
DUF211 Uncharacterized ArCR, COG1888 0.5 5.2 1
Myosin_N Myosin N-terminal SH3-like domain 3.4 5.3 1
Tombus_movement Tombusvirus movement protein 1.2 5.5 1
DUF2510 Protein of unknown function (DUF2510) 2.5 5.5 1
AlphaC_N Alpha C protein N terminal 0.8 5.7 1
Cupin_1 Cupin 1.7 5.8 1
SdrG_C_C C-terminus of bacterial fibrinogen-bi 2.0 5.8 1
DUF992 Protein of unknown function (DUF992) 2.1 5.9 1
Transposase_17 Transposase IS200 like 1.8 6 1
Clathrin_propel Clathrin propeller repeat 3.9 6 1
ResIII Type III restriction enzyme, res subu 1.0 6.1 1
Baculo_VP91_N Viral capsid protein 91 N-terminal -0.2 6.5 1
Peptidase_A4 Peptidase A4 family -0.5 7.3 1
Tafi-CsgF Curli production assembly/transport c 0.9 7.6 1
DUF1262 Protein of unknown function (DUF1262) -0.9 7.7 1
Glyco_transf_10 Glycosyltransferase family 10 (fucosy -0.7 8.2 1
Pneumo_NS1 Pneumovirus NS1 protein 0.6 8.8 1
Glyco_hydro_9 Glycosyl hydrolase family 9 -1.0 8.9 1
Glyco_hydro_38C Glycosyl hydrolases family 38 C-termi -1.3 8.9 1
DUF859 Siphovirus protein of unknown functio -1.9 9.3 1
UPF0242 Uncharacterised protein family (UPF02 -1.0 9.6 1
Peptidase_M4 Thermolysin metallopeptidase, catalyt 0.8 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TIG 1/2 4 20 .. 82 103 .] 2.5 9
2H-phosphodiest 1/1 38 54 .. 112 128 .] 5.2 0.52
DUF482 1/1 55 77 .. 366 388 .] 1.0 3.1
DUF1314 1/1 73 85 .. 177 189 .] 2.4 1.9
Glyco_transf_10 1/1 101 113 .. 432 449 .] -0.7 8.2
Pneumo_NS1 1/1 137 149 .. 124 136 .] 0.6 8.8
DUF1577 1/1 145 162 .. 389 407 .] 1.6 1.4
DUF992 1/1 267 281 .. 113 127 .. 2.1 5.9
Chlam_PMP 1/5 271 319 .. 1 19 [] 5.6 3.1
Fil_haemagg 1/1 288 345 .. 17 75 .] 2.7 4.8
Chlam_PMP 2/5 326 344 .. 1 19 [] 2.2 26
Chlam_PMP 3/5 351 374 .. 1 19 [] 8.4 0.52
Chlam_PMP 4/5 386 400 .. 4 19 .] 4.1 7.8
Chlam_PMP 5/5 444 463 .. 1 19 [] 3.0 16
DUF1888 1/1 658 680 .. 104 126 .] 4.2 1.1
Propeptide_C1 1/1 675 696 .. 5 27 .. 9.2 0.065
DUF1262 1/1 684 700 .. 328 344 .] -0.9 7.7
He_PIG 1/1 716 771 .. 27 61 .] 3.7 3
Prok-TraM 1/1 739 748 .. 81 90 .] 1.6 4.8
Calx-beta 1/8 741 832 .. 1 109 [] 73.4 3e-19
Baculo_VP91_N 1/1 761 772 .. 194 205 .] -0.2 6.5
TIG 2/2 773 829 .. 41 103 .] 3.9 3.8
Peptidase_A4 1/1 775 781 .. 222 228 .] -0.5 7.3
Myosin_N 1/1 780 797 .. 13 30 .. 3.4 5.3
CBM_25 1/1 790 810 .. 67 87 .] 4.3 1.2
Albumin_I 1/1 818 841 .. 103 126 .] 6.9 0.23
Calx-beta 2/8 844 941 .. 1 109 [] 6.2 0.56
Clathrin_propel 1/1 851 887 .. 1 43 [] 3.9 6
DUF211 1/1 877 888 .. 30 41 .. 0.5 5.2
Cupin_1 1/1 938 951 .. 1 16 [. 1.7 5.8
Transposase_17 1/1 946 956 .. 99 109 .] 1.8 6
Calx-beta 3/8 954 1052 .. 1 109 [] 31.4 7.8e-08
DUF859 1/1 994 1010 .. 84 100 .. -1.9 9.3
Tombus_movement 1/1 997 1003 .. 74 80 .] 1.2 5.5
Pectate_lyase 1/1 999 1027 .. 1 32 [. 2.0 1.9
NAGidase 1/1 1005 1045 .. 298 340 .] 2.1 1.7
SdrG_C_C 1/1 1041 1068 .. 1 33 [. 2.0 5.8
I-set 1/1 1075 1091 .. 1 17 [. 4.4 1.5
AlphaC_N 1/1 1079 1088 .. 1 10 [. 0.8 5.7
Tash_PEST 1/2 1101 1119 .. 1 19 [] 2.8 14
Glyco_hydro_38C 1/1 1119 1138 .. 1 20 [. -1.3 8.9
Calx-beta 4/8 1133 1148 .. 86 101 .. 4.8 1.4
Peptidase_M4 1/1 1153 1160 .. 158 165 .] 0.8 9.7
OS-D 1/1 1161 1172 .. 1 13 [. 2.4 2.2
Cna_B 1/1 1183 1205 .. 49 77 .] 2.8 2.5
ResIII 1/1 1222 1230 .. 230 238 .] 1.0 6.1
Calx-beta 5/8 1242 1280 .. 69 109 .] 16.5 0.00087
Phage_coat 1/1 1245 1260 .. 1 16 [. 2.6 0.69
Tash_PEST 2/2 1267 1286 .. 1 19 [] 1.8 28
Glyco_hydro_9 1/1 1281 1297 .. 511 527 .] -1.0 8.9
Calx-beta 6/8 1292 1391 .. 1 109 [] 83.5 5.7e-22
DUF2135 1/2 1311 1325 .. 47 61 .] 0.5 28
Luteo_coat 1/1 1321 1331 .. 129 139 .] 1.8 3.9
DUF2135 2/2 1360 1374 .. 47 61 .] 2.9 5.9
Calx-beta 7/8 1404 1502 .. 1 109 [] 77.0 3.3e-20
Rotavirus_VP3 1/1 1408 1435 .. 35 63 .. 7.5 0.045
GRIP 1/1 1469 1481 .. 34 46 .] 3.4 4.5
Tafi-CsgF 1/1 1493 1529 .. 121 156 .] 0.9 7.6
Neur 1/1 1503 1522 .. 1 21 [. -0.7 4.3
Calx-beta 8/8 1516 1529 .. 1 15 [. 1.7 9.3
PT 1/4 1526 1556 .. 6 36 .] 6.7 0.42
PT 2/4 1559 1592 .. 1 36 [] 4.8 1.5
PT 3/4 1597 1632 .. 1 36 [] 10.4 0.036
DUF2510 1/1 1668 1694 .. 26 51 .] 2.5 5.5
PLRV_ORF5 1/1 1674 1695 .. 1 20 [. 1.6 1.7
RNase_P_pop3 1/1 1677 1688 .. 164 175 .] 5.6 0.47
PT 4/4 1709 1746 .. 1 36 [] 6.7 0.43
HemolysinCabind 1/12 1799 1816 .. 1 18 [] 4.6 3.2
HemolysinCabind 2/12 1817 1834 .. 1 18 [] 11.1 0.035
HemolysinCabind 3/12 1835 1852 .. 1 18 [] 28.0 2.5e-07
Urm1 1/1 1842 1846 .. 109 113 .] -0.1 1.6
RtxA 1/1 1845 1862 .. 2 19 .] 4.4 4.1
HemolysinCabind 4/12 1862 1879 .. 1 18 [] 16.2 0.00096
HemolysinCabind 5/12 1880 1897 .. 1 18 [] 23.0 8.1e-06
HemolysinCabind 6/12 1907 1924 .. 1 18 [] 26.6 6.6e-07
HemolysinCabind 7/12 1925 1942 .. 1 18 [] 10.2 0.065
HemolysinCabind 8/12 1943 1960 .. 1 18 [] 25.5 1.5e-06
HemolysinCabind 9/12 1961 1978 .. 1 18 [] 18.5 0.00019
HemolysinCabind 10/12 1979 1996 .. 1 18 [] 16.5 0.00076
HemolysinCabind 11/12 1997 2014 .. 1 18 [] 22.3 1.3e-05
Dicty_CAD 1/1 2014 2025 .. 1 14 [. 1.3 3.1
HemolysinCabind 12/12 2015 2032 .. 1 18 [] 21.2 2.9e-05
UPF0242 1/1 2045 2063 .. 329 347 .. -1.0 9.6
tRNA_synt_1c_R1 1/1 2079 2088 .. 1 10 [. 2.6 1.3
Alignments of top-scoring domains:
TIG: domain 1 of 2, from 4 to 20: score 2.5, E = 9
CS EEEEEETTCTTCEEEEEEEEEE
*->tvsvdgggsgdgrssspvtFtY<-*
++ +d+g+ s s++ FtY
gi|1194847 4 NFILDRGN-----SHSSGAFTY 20
2H-phosphodiest: domain 1 of 1, from 38 to 54: score 5.2, E = 0.52
*->nptasatgvrPnegilL<-*
npt+ ++g rP++ i+L
gi|1194847 38 NPTDLMAGIRPGTEIVL 54
DUF482: domain 1 of 1, from 55 to 77: score 1.0, E = 3.1
*->LerEraaveeyieelnehlPFrk<-*
L+r r ++ e +e ln+h PF
gi|1194847 55 LDRDRNGMIEIAEILNQHPPFAS 77
DUF1314: domain 1 of 1, from 73 to 85: score 2.4, E = 1.9
*->PtvsnsrilakGS<-*
P++ +++++GS
gi|1194847 73 PPFASVHLISHGS 85
Glyco_transf_10: domain 1 of 1, from 101 to 113: score -0.7, E = 8.2
*->epeRyKsydniasWDAFq<-*
+p Ry s+ + sW F
gi|1194847 101 LP-RYTSI--LKSW--FS 113
Pneumo_NS1: domain 1 of 1, from 137 to 149: score 0.6, E = 8.8
*->kYsnqLseLLGld<-*
++ qLs++LG++
gi|1194847 137 NFLKQLSDILGIE 149
DUF1577: domain 1 of 1, from 145 to 162: score 1.6, E = 1.4
*->yHLGielvgksdlPgerai<-*
+ LGie+ ++s + g+ ++
gi|1194847 145 I-LGIEIIASSQRVGNAEL 162
DUF992: domain 1 of 1, from 267 to 281: score 2.1, E = 5.9
*->GlGANvLVGGssksi<-*
GlG+N++V+G s+s+
gi|1194847 267 GLGTNIIVSGNSNSF 281
Chlam_PMP: domain 1 of 5, from 271 to 319: score 5.6, E = 3.1
*->ditFsgNsa..............................aggGGAiy
+i+ sgNs + + +++++++ + + ++ + +++ ++ +GG+iy
gi|1194847 271 NIIVSGNSNsfrvfliddntntkinvtlqgltiqdgvaeNDDGGGIY 317
as<-*
++
gi|1194847 318 NK 319
Fil_haemagg: domain 1 of 1, from 288 to 345: score 2.7, E = 4.8
CS E-SEEEEEE-STT-EEEE-S-EE ESSE...................
*->dlnnggtlsagggltltaaglln.nggtliaggdlllaagalrnggd
d++n+ + ++ +glt++ + + n++gg++ ++ +l+l+ +++r +
gi|1194847 288 DNTNTKINVTLQGLTIQDGVAENdDGGGIYNKENLTLDESIVRYN-- 332
CS EEEEESS-EEEEE
ltltaaGdLdnsg<-*
l+ + +G ++n g
gi|1194847 333 LSEDDGGGIRNDG 345
Chlam_PMP: domain 2 of 5, from 326 to 344: score 2.2, E = 26
*->ditFsgNsaaggGGAiyas<-*
+++ N++ +GG+i +
gi|1194847 326 ESIVRYNLSEDDGGGIRND 344
Chlam_PMP: domain 3 of 5, from 351 to 374: score 8.4, E = 0.52
*->ditFsgNsa.....aggGGAiyas<-*
++++ +N++++ ++++gGG+++++
gi|1194847 351 NSSIVNNISqgmtsTSGGGGLLNT 374
Chlam_PMP: domain 4 of 5, from 386 to 400: score 4.1, E = 7.8
*->FsgNsaaggGGAiyas<-*
F+gN+a ++G Ai +
gi|1194847 386 FDGNRA-KNGSAIRND 400
Chlam_PMP: domain 5 of 5, from 444 to 463: score 3.0, E = 16
*->ditFsgNsa.aggGGAiyas<-*
++t+s+N++++ +G+++ +
gi|1194847 444 NSTISNNQVsGIVNGGVVDK 463
DUF1888: domain 1 of 1, from 658 to 680: score 4.2, E = 1.1
*->VLsntgnTLllLSPDPqvINrpe<-*
VL n g TL l SPD +I +
gi|1194847 658 VLGNEGETLTLKSPDGNIIDSVN 680
Propeptide_C1: domain 1 of 1, from 675 to 696: score 9.2, E = 0.065
*->fInyINekpntTWKAGrNfreft<-*
+I+ +Ne + +W AG N ++ft
gi|1194847 675 IIDSVNED-GGGWVAGENSPKFT 696
DUF1262: domain 1 of 1, from 684 to 700: score -0.9, E = 7.7
*->gGWvagggedrssikRv<-*
gGWvag++ + + +R
gi|1194847 684 GGWVAGENSPKFTMERI 700
He_PIG: domain 1 of 1, from 716 to 771: score 3.7, E = 3
*->GLtL...dsstGritGtPtptvqp..................Gsytf
GLt+++ d+ + +i+GtP+++ + + ++ + ++ + + ++G+++
gi|1194847 716 GLTIngiDANDNLIYGTPKSANSLgaipnlsvndvdiveidsGTFNT 762
tvtatdgsg<-*
t+t+ ++
gi|1194847 763 TFTVNLSHP 771
Prok-TraM: domain 1 of 1, from 739 to 748: score 1.6, E = 4.8
CS HTSEE-----
*->LGfiPkvsvn<-*
LG iP+ svn
gi|1194847 739 LGAIPNLSVN 748
Calx-beta: domain 1 of 8, from 741 to 832: score 73.4, E = 3e-19
*->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr
a+ + + + d+ +v+++ ++++ +++V + + ++
gi|1194847 741 AIPNLSVN-DVDIVEIDSGTFNT---------TFTVNLSHP---TSQ 774
tVtVsyrTeDGTAtaGPgsDYeptegtiLtFgPgedtekcinvtiiDDdv
tVtV+y+T+D TA++G +DY++++g+ L F+Pge t k+++v i D+
gi|1194847 775 TVTVDYVTADVTASEG--NDYTFKTGS-LEFEPGE-TSKTVDVSITGDSL 820
yEgdEnFfvrLs<-*
+E +E+F ++Ls
gi|1194847 821 FEANETFNLVLS 832
Baculo_VP91_N: domain 1 of 1, from 761 to 772: score -0.2, E = 6.5
*->stetnddkyHPT<-*
+t+++ ++ HPT
gi|1194847 761 NTTFTVNLSHPT 772
TIG: domain 2 of 2, from 773 to 829: score 3.9, E = 3.8
CS TEEEEETTEEEGGGEEEEESESEEEEEE-SCS EEESSCCEEEEEEE
*->disVtfggtpvpcdvissssstqivCktPpya.ggpsppvtvtvsvd
+++Vt+ ++ +dv+ s+ + ++kt+++ + + tv+vs++
gi|1194847 773 SQTVTVDYVT--ADVTASEG-NDYTFKTGSLEfEPGETSKTVDVSIT 816
CS ETTCTTCEEEEEEEEEE
gggsgdgrssspvtFtY<-*
g++ + +++tF+
gi|1194847 817 GDS----LFEANETFNL 829
Peptidase_A4: domain 1 of 1, from 775 to 781: score -0.5, E = 7.3
CS .EEEEE-
*->tVTveYV<-*
tVTv YV
gi|1194847 775 TVTVDYV 781
Myosin_N: domain 1 of 1, from 780 to 797: score 3.4, E = 5.3
CS EEEEEEEEECTTEEEEEE
*->fvkgeIksrkGdkVtVkt<-*
+v + +++++G+ +t+kt
gi|1194847 780 YVTADVTASEGNDYTFKT 797
CBM_25: domain 1 of 1, from 790 to 810: score 4.3, E = 1.2
*->gaNYafssGvnTvadGvvgrg<-*
g++Y+f +G ++G + +
gi|1194847 790 GNDYTFKTGSLEFEPGETSKT 810
Albumin_I: domain 1 of 1, from 818 to 841: score 6.9, E = 0.23
*->sSnSeAedVFfkisstPsnRallk<-*
+S +eA + F + s+Psn ++++
gi|1194847 818 DSLFEANETFNLVLSNPSNAGIID 841
Calx-beta: domain 2 of 8, from 844 to 941: score 6.2, E = 0.56
*->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr
+ I D+d a++v F t q+ E+ ++++v ++ + ++
gi|1194847 844 GEGKIQDNDTAPTVNFT-TATQS--SEEGEVITVIPELSAV---AGV 884
tVtVsyrTeDGTAtaGPgsDYeptegtiLtFgPgedtekcinvtiiDDdv
+ t +++ + GTAt + sDY + ++ +g+ e i++++ +D+
gi|1194847 885 NITLPFS-VAGTATNN--SDYSINPSP-IIIPAGN-LESIISLNLSEDNL 929
yEgdEnFfvrLs<-*
+E E+ ++L+
gi|1194847 930 DEVEETIILNLD 941
Clathrin_propel: domain 1 of 1, from 851 to 887: score 3.9, E = 6
CS EECCEEEEEEEEEEEEEEEEEEEEEE.EETCECEEEEEEEETT
*->gaifsdidfptaimeswkgilainkqnaqdlakggkvqivdle<-*
+ + ++++f+ta++ s g ++ + + v +v++
gi|1194847 851 NDTAPTVNFTTATQSSEEGEVITV------IPELSAVAGVNIT 887
DUF211: domain 1 of 1, from 877 to 888: score 0.5, E = 5.2
*->eLeGVdGVNItL<-*
eL+ V GVNItL
gi|1194847 877 ELSAVAGVNITL 888
Cupin_1: domain 1 of 1, from 938 to 951: score 1.7, E = 5.8
CS EECCCSSC...SEEEE
*->fnllepspgfADvyns<-*
+nl++p++ A+v+++
gi|1194847 938 LNLDNPTN--ATVGEN 951
Transposase_17: domain 1 of 1, from 946 to 956: score 1.8, E = 6
*->dTvGeantetI<-*
+TvGe++t tI
gi|1194847 946 ATVGENSTHTI 956
Calx-beta: domain 3 of 8, from 954 to 1052: score 31.4, E = 7.8e-08
*->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr
+t+t lD d ++ v+++ ++ lE++ + +++ ++ +
gi|1194847 954 HTITLLDIDPPPNVSLSLNKFSF--LETTDTTTLTASLDVV---SSQ 995
tVtVsyrTeDGTAtaGPgsDYeptegtiLtFgPgedtekcinvtiiDDdv
+VtV++ e GTAt G +DY++ + + ++ +ge te i +t ++D +
gi|1194847 996 DVTVNFNFE-GTATFG--TDYTANNTS-IIIPAGE-TENSITLTGLTDAI 1040
yEgdEnFfvrLs<-*
+E++E+ v +
gi|1194847 1041 AEENETVEVSIN 1052
DUF859: domain 1 of 1, from 994 to 1010: score -1.9, E = 9.3
*->dqtVTInHsgdGtktFa<-*
+q VT+n ++Gt tF+
gi|1194847 994 SQDVTVNFNFEGTATFG 1010
Tombus_movement: domain 1 of 1, from 997 to 1003: score 1.2, E = 5.5
*->VtInFNF<-*
Vt nFNF
gi|1194847 997 VTVNFNF 1003
Pectate_lyase: domain 1 of 1, from 999 to 1027: score 2.0, E = 1.9
CS XXXXXXXXX....XXX--EEESS-EEE-TT-E
*->assgvtptvPsteaaaaatvvhdtIeVkaGqv<-*
+++++++t+ +++ t ++++I+++aG++
gi|1194847 999 VNFNFEGTAT---FGTDYTANNTSIIIPAGET 1027
NAGidase: domain 1 of 1, from 1005 to 1045: score 2.1, E = 1.7
*->NsadyAsadywksWlssiekieggkaeetvatlllnafakhny<-*
++a++ +dy ++ ++si++ +g+++ + +t l+ a+a+ n
gi|1194847 1005 GTATF-GTDYTAN-NTSIIIPAGETENSITLTGLTDAIAEENE 1045
SdrG_C_C: domain 1 of 1, from 1041 to 1068: score 2.0, E = 5.8
*->vdydnnggvnvnSAFTEsIttlDkeengkftqt<-*
+ + v++nS +I+ + k e++++t t
gi|1194847 1041 AEENETVEVSINS----IINGIEK-ETQTVTAT 1068
I-set: domain 1 of 1, from 1075 to 1091: score 4.4, E = 1.5
CS -EEEE--EEEEEETTCE
*->PkFtqkpkdveVqeGes<-*
P+++ p+++ ++eGe+
gi|1194847 1075 PQVIVTPTNLNISEGET 1091
AlphaC_N: domain 1 of 1, from 1079 to 1088: score 0.8, E = 5.7
CS XXXXXXXXXX
*->vtqgqlNife<-*
vt+ +lNi+e
gi|1194847 1079 VTPTNLNISE 1088
Tash_PEST: domain 1 of 2, from 1101 to 1119: score 2.8, E = 14
*->eelePEtielElsSDeeee<-*
++++P ti +E +S e
gi|1194847 1101 QPTQPVTIFVETGSQVEAV 1119
Glyco_hydro_38C: domain 1 of 1, from 1119 to 1138: score -1.3, E = 8.9
CS EEEEEEE-SSS-EEEEEEEE
*->epvvvfNpLawtrnevVrip<-*
+ ++fN +w+ ++ V+i+
gi|1194847 1119 VSPIIFNETNWNIPQTVSIT 1138
Calx-beta: domain 4 of 8, from 1133 to 1148: score 4.8, E = 1.4
*->kcinvtiiDDdvyEgd<-*
+++++t+iDD v+Eg+
gi|1194847 1133 QTVSITAIDDTVLEGN 1148
Peptidase_M4: domain 1 of 1, from 1153 to 1160: score 0.8, E = 9.7
CS HHHHHHHC
*->lTHGVTEq<-*
lTH+VT +
gi|1194847 1153 LTHAVTSN 1160
OS-D: domain 1 of 1, from 1161 to 1172: score 2.4, E = 2.2
*->YTdKYDNinvDEI<-*
+ KYDNi vD I
gi|1194847 1161 -DGKYDNIGVDNI 1172
Cna_B: domain 1 of 1, from 1183 to 1205: score 2.8, E = 2.5
CS EEEEEEESSS-............EEEEEE
*->Ytltttpveftitensdgeeekivtvtit<-*
Y l+ +++e+ +++ns +tvt t
gi|1194847 1183 YSLSVDNTEVIEGNNSS------QTVTYT 1205
ResIII: domain 1 of 1, from 1222 to 1230: score 1.0, E = 6.1
*->LGlTATPer<-*
L+ TATPe+
gi|1194847 1222 LEGTATPEI 1230
Calx-beta: domain 5 of 8, from 1242 to 1280: score 16.5, E = 0.00087
*->eptegtiLtFgPgedtekcinvtiiDDdvyEgdEnFfvrLs<-*
+ t+g + F+ ge t k+ v i+ D+ +E+ E+ + L+
gi|1194847 1242 VNTSGN-INFDVGE-TTKTLTVDILGDETFEPEETLKLSLT 1280
Phage_coat: domain 1 of 1, from 1245 to 1260: score 2.6, E = 0.69
CS --EEEEEETTEEEEEE
*->sKtivLsvGEAtRtLt<-*
s i vGE t+tLt
gi|1194847 1245 SGNINFDVGETTKTLT 1260
Tash_PEST: domain 2 of 2, from 1267 to 1286: score 1.8, E = 28
*->eeleP.EtielElsSDeeee<-*
e+ eP+Et +l l S+e +
gi|1194847 1267 ETFEPeETLKLSLTSSETTT 1286
Glyco_hydro_9: domain 1 of 1, from 1281 to 1297: score -1.0, E = 8.9
CS CCB--HHHHHHHHHHHH
*->tNEvAtdyNApLvgaLA<-*
++E +t +N+pL a A
gi|1194847 1281 SSETTTFNNSPLSIAIA 1297
Calx-beta: domain 6 of 8, from 1292 to 1391: score 83.5, E = 5.7e-22
*->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr
+ I dd +++ Fe + y+V +E +++v++ V + ++ ++
gi|1194847 1292 LSIAIANDDPLPIINFETASYTV--DEITETVTINVSLSNP---SSS 1333
tVtVsyrTeDGTAtaGPgsDYeptegtiLtFgPgedtekcinvtiiDDdv
+ tV y T +GTA aG +DY+ t+g LtF+Pge t++ + ++i +D
gi|1194847 1334 EITVIYATSNGTAIAG--KDYTETTGN-LTFNPGE-TQQSFTIPIQNDQS 1379
yEgdEnFfvrLs<-*
E +E+ ++L+
gi|1194847 1380 IEANETVNIELD 1391
DUF2135: domain 1 of 2, from 1311 to 1325: score 0.5, E = 28
*->ivtPnEkretfvvpl<-*
++t++E +et+ +++
gi|1194847 1311 SYTVDEITETVTINV 1325
Luteo_coat: domain 1 of 1, from 1321 to 1331: score 1.8, E = 3.9
*->ITirVqlqNPK<-*
+Ti+V+l NP+
gi|1194847 1321 VTINVSLSNPS 1331
DUF2135: domain 2 of 2, from 1360 to 1374: score 2.9, E = 5.9
*->ivtPnEkretfvvpl<-*
++ P E+++ f +p+
gi|1194847 1360 TFNPGETQQSFTIPI 1374
Calx-beta: domain 7 of 8, from 1404 to 1502: score 77.0, E = 3.3e-20
*->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr
a+ + +D+ + +v++e+ +y+V +E dG++e+ V ++ +
gi|1194847 1404 AELILIDN-QTATVSLEQVNYTV--NEIDGVIEILVNLDQV---VSI 1444
tVtVsyrTeDGTAtaGPgsDYeptegtiLtFgPgedtekcinvtiiDDdv
+V+++y+T GTAta DY+pt g+ L F+Pge t+k i+++i+DD +
gi|1194847 1445 PVSIDYTTIGGTATAA--FDYTPTRGV-LDFNPGE-TQKIISIPILDDQE 1490
yEgdEnFfvrLs<-*
E++E+ L+
gi|1194847 1491 IEENETVNFALT 1502
Rotavirus_VP3: domain 1 of 1, from 1408 to 1435: score 7.5, E = 0.045
*->LISNltAhniLiYLsysiVNEVDkaleiL<-*
LI N+tA+ L ++y++ NE+D ++eiL
gi|1194847 1408 LIDNQTATVSLEQVNYTV-NEIDGVIEIL 1435
GRIP: domain 1 of 1, from 1469 to 1481: score 3.4, E = 4.5
*->lLqFspeEkqkll<-*
+L+F p E qk+
gi|1194847 1469 VLDFNPGETQKII 1481
Tafi-CsgF: domain 1 of 1, from 1493 to 1529: score 0.9, E = 7.6
*->ggttisFtralDsvrLtIvngatGevTqIv..vPllVe<-*
+ t+ F ++ s +L+ +t ++T I++++P+ Ve
gi|1194847 1493 ENETVNFALTNPSQKLILGSPDTATITIISddIPT-VE 1529
Neur: domain 1 of 1, from 1503 to 1522: score -0.7, E = 4.3
CS XXXXXXXXXXXXXXXXXXXXX
*->MNPNQKIitigsvslgivvin<-*
NP+QK+i+ + + +i +i+
gi|1194847 1503 -NPSQKLILGSPDTATITIIS 1522
Calx-beta: domain 8 of 8, from 1516 to 1529: score 1.7, E = 9.3
*->atvtIlDdddagvvg<-*
at+tI+ d d ++v+
gi|1194847 1516 ATITIISD-DIPTVE 1529
PT: domain 1 of 4, from 1526 to 1556: score 6.7, E = 0.42
CS ------SS-----SS-SS-------SS--SS
*->PTaqPTvqPTgqPtaqPTdqPtaqPtdaPta<-*
PT +PT+ PT +Pt+ PT + + +P+ +Pt+
gi|1194847 1526 PTVEPTPIPTIEPTPTPTIELIPEPSVEPTP 1556
PT: domain 2 of 4, from 1559 to 1592: score 4.8, E = 1.5
CS --S--------SS-----SS-SS-------SS--SS
*->qPTaqPTaqPTvqPTgqPtaqPTdqPtaqPtdaPta<-*
+PT +P+ +PT+ PT ++ ++P+ +Pt Pt +Pt+
gi|1194847 1559 EPTPEPSIEPTPTPTIELIPEPSIEPT--PTIEPTP 1592
PT: domain 3 of 4, from 1597 to 1632: score 10.4, E = 0.036
CS --S--------SS-----SS-SS-------SS--SS
*->qPTaqPTaqPTvqPTgqPtaqPTdqPtaqPtdaPta<-*
+PT PT +PT+ PT ++t++P+ +Pt Pt + ++
gi|1194847 1597 EPTPTPTFEPTPTPTIELTPEPSIEPTPTPTIELIP 1632
DUF2510: domain 1 of 1, from 1668 to 1694: score 2.5, E = 5.5
*->lvPtaai.PavqpaaaappaPaaapqP<-*
l Pt+ i+P v p++ ++ +P+++p+P
gi|1194847 1668 LIPTPTIePSVEPTPTPFLEPTPTPTP 1694
PLRV_ORF5: domain 1 of 1, from 1674 to 1695: score 1.6, E = 1.7
*->VDgePgPsPsP..sPtPtPtPq<-*
+++ +P P+P PtPtPtP+
gi|1194847 1674 IEPSVEPTPTPflEPTPTPTPT 1695
RNase_P_pop3: domain 1 of 1, from 1677 to 1688: score 5.6, E = 0.47
*->kvEepqiPWLep<-*
+vE+ ++P+Lep
gi|1194847 1677 SVEPTPTPFLEP 1688
PT: domain 4 of 4, from 1709 to 1746: score 6.7, E = 0.43
CS --S--------SS-----SS-SS-- -----SS--SS
*->qPTaqPTaqPTvqPTgqPtaqPTdq..PtaqPtdaPta<-*
PT +P+ +PT++P+ ++t+ PT ++ Pt q t +P++
gi|1194847 1709 TPTFEPSVEPTPEPSIELTPTPTIEpiPTPQLTFEPQQ 1746
HemolysinCabind: domain 1 of 12, from 1799 to 1816: score 4.6, E = 3.2
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G+ ++ ++G G Dtl
gi|1194847 1799 IGTSADNQMFGFLGEDTL 1816
HemolysinCabind: domain 2 of 12, from 1817 to 1834: score 11.1, E = 0.035
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+ G+GnD+ ++ nD l
gi|1194847 1817 FAGEGNDIVIANNNNDFL 1834
HemolysinCabind: domain 3 of 12, from 1835 to 1852: score 28.0, E = 2.5e-07
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G++GnDtL+Gg+GnDtl
gi|1194847 1835 SGDEGNDTLHGGQGNDTL 1852
Urm1: domain 1 of 1, from 1842 to 1846: score -0.1, E = 1.6
CS -----
*->TLHGG<-*
TLHGG
gi|1194847 1842 TLHGG 1846
RtxA: domain 1 of 1, from 1845 to 1862: score 4.4, E = 4.1
*->aGgaNvitkvGdggdlaf<-*
+G++N ++G+g+d+ f
gi|1194847 1845 GGQGNDTLQMGSGQDQGF 1862
HemolysinCabind: domain 4 of 12, from 1862 to 1879: score 16.2, E = 0.00096
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G++G D +yG +G D+l
gi|1194847 1862 FGDQGEDYIYGENGEDRL 1879
HemolysinCabind: domain 5 of 12, from 1880 to 1897: score 23.0, E = 8.1e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
yGG+GnD+L+ ++GnD+
gi|1194847 1880 YGGEGNDRLFADDGNDWV 1897
HemolysinCabind: domain 6 of 12, from 1907 to 1924: score 26.6, E = 6.6e-07
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G+ GnDtLyGg+G Dtl
gi|1194847 1907 SGNSGNDTLYGGKGQDTL 1924
HemolysinCabind: domain 7 of 12, from 1925 to 1942: score 10.2, E = 0.065
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
GG +D++ G+ D++
gi|1194847 1925 QGGTDHDSIEGNLAEDWI 1942
HemolysinCabind: domain 8 of 12, from 1943 to 1960: score 25.5, E = 1.5e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
G+aGnD+L G+aG+Dtl
gi|1194847 1943 EGNAGNDHLWGNAGDDTL 1960
HemolysinCabind: domain 9 of 12, from 1961 to 1978: score 18.5, E = 0.00019
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G+ +D+L+Gg+GnD+l
gi|1194847 1961 SGNRDHDILFGGDGNDWL 1978
HemolysinCabind: domain 10 of 12, from 1979 to 1996: score 16.5, E = 0.00076
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G+aG D ++G+ G+Dtl
gi|1194847 1979 DGNAGEDEIFGNFGDDTL 1996
HemolysinCabind: domain 11 of 12, from 1997 to 2014: score 22.3, E = 1.3e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG+GnD+L Gg+G+D+l
gi|1194847 1997 DGGEGNDRLLGGDGDDWL 2014
Dicty_CAD: domain 1 of 1, from 2014 to 2025: score 1.3, E = 3.1
*->itLvnEDGEstisG<-*
Lv E+GE t+sG
gi|1194847 2014 --LVGEEGEDTLSG 2025
HemolysinCabind: domain 12 of 12, from 2015 to 2032: score 21.2, E = 2.9e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
G +G DtL+Gg+GnD++
gi|1194847 2015 VGEEGEDTLSGGEGNDRF 2032
UPF0242: domain 1 of 1, from 2045 to 2063: score -1.0, E = 9.6
*->DFLkkesDvVleGfkQWer<-*
DF k e +Vl+G+ QWe+
gi|1194847 2045 DFEKGEDMIVLDGGLQWEE 2063
tRNA_synt_1c_R1: domain 1 of 1, from 2079 to 2088: score 2.6, E = 1.3
*->sdkEELlaLF<-*
+++EEL++LF
gi|1194847 2079 QTGEELIELF 2088
//