hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 119489485.fa
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Query sequence: gi|119489485|ref|ZP_01622246.1|
Accession: [none]
Description: hypothetical protein L8106_27926 [Lyngbya sp. PCC 8106]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HemolysinCabind Hemolysin-type calcium-binding repeat 185.6 4.2e-55 12
Cadherin Cadherin domain 60.2 1.5e-16 1
Chlam_PMP Chlamydia polymorphic membrane protei 24.2 2.6e-05 3
BAT2_N BAT2 N-terminus 5.6 0.23 2
UPF0560 Uncharacterised protein family UPF056 1.0 1.1 1
Glyco_hydro_32C Glycosyl hydrolases family 32 C termi 4.2 1.1 1
PKD PKD domain 3.7 1.3 1
Baculo_FP Baculovirus FP protein 1.6 1.4 1
DUF1769 Protein of unknown function (DUF1769) 4.5 1.6 2
PQQ PQQ enzyme repeat 4.5 1.9 1
Peptidase_M26_N M26 IgA1-specific Metallo-endopeptida 2.6 2.2 1
Chordopox_G3 Chordopoxvirus G3 protein 0.8 3.1 1
His_kinase Histidine kinase 3.2 3.5 1
DUF1410 DUF1410 domain 3.1 3.8 1
OstA OstA-like protein 1.9 4.4 1
Autotransporter Autotransporter beta-domain 1.6 4.5 1
PLAT PLAT/LH2 domain 1.5 5.6 1
VirK VirK protein 1.9 5.8 1
DUF1292 Protein of unknown function (DUF1292) 2.1 6.1 1
EII-GUT PTS system enzyme II sorbitol-specifi 1.5 6.1 1
DAHP_synth_1 DAHP synthetase I family 0.2 6.2 1
Glyco_hydro_59 Glycosyl hydrolase family 59 -1.5 6.3 1
StbA StbA protein 0.4 7 1
CBM_17_28 Carbohydrate binding domain (family 1 0.5 7.2 1
PEN-2 Presenilin enhancer-2 subunit of gamm 0.5 7.3 1
DUF2381 Protein of unknown function (DUF2381) 0.3 7.6 1
P63C P63C domain 1.6 8.1 1
Transglut_N Transglutaminase family 1.2 8.1 1
Peptidase_M24 metallopeptidase family M24 0.3 8.2 1
Ndc80_HEC HEC/Ndc80p family 0.3 8.9 1
Flagellin_IN Flagellin hook IN motif 2.2 9.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
P63C 1/1 18 28 .. 87 98 .] 1.6 8.1
Glyco_hydro_59 1/1 29 45 .. 653 669 .] -1.5 6.3
DAHP_synth_1 1/1 74 95 .. 302 323 .] 0.2 6.2
His_kinase 1/1 113 134 .. 34 55 .. 3.2 3.5
HemolysinCabind 1/12 201 206 .. 13 18 .] 0.5 57
UPF0560 1/1 255 263 .. 889 897 .] 1.0 1.1
Autotransporter 1/1 289 324 .. 264 296 .] 1.6 4.5
CBM_17_28 1/1 300 312 .. 209 224 .] 0.5 7.2
Chlam_PMP 1/3 308 334 .. 1 19 [] 9.0 0.36
VirK 1/1 451 468 .. 109 129 .] 1.9 5.8
Chlam_PMP 2/3 459 489 .. 1 19 [] 14.8 0.0097
Chordopox_G3 1/1 498 505 .. 103 110 .] 0.8 3.1
DUF2381 1/1 498 508 .. 296 306 .] 0.3 7.6
Chlam_PMP 3/3 505 513 .. 1 9 [. 0.4 81
DUF1410 1/1 514 530 .. 1 17 [. 3.1 3.8
Peptidase_M26_N 1/1 618 649 .. 1 36 [. 2.6 2.2
Cadherin 1/1 798 886 .. 1 107 [] 60.2 1.5e-16
PKD 1/1 817 883 .. 26 92 .] 3.7 1.3
OstA 1/1 822 833 .. 172 183 .] 1.9 4.4
PEN-2 1/1 822 832 .. 89 101 .] 0.5 7.3
PQQ 1/1 826 847 .. 1 22 [. 4.5 1.9
PLAT 1/1 864 906 .. 1 66 [. 1.5 5.6
Transglut_N 1/1 864 873 .. 121 130 .] 1.2 8.1
BAT2_N 1/2 1008 1062 .. 98 154 .. 1.6 3.4
BAT2_N 2/2 1063 1109 .. 108 155 .. 4.0 0.65
Baculo_FP 1/1 1215 1233 .. 1 20 [. 1.6 1.4
HemolysinCabind 2/12 1255 1267 .. 1 13 [. 5.4 1.8
Glyco_hydro_32C 1/1 1269 1277 .. 117 125 .] 4.2 1.1
HemolysinCabind 3/12 1273 1290 .. 1 18 [] 7.1 0.57
HemolysinCabind 4/12 1291 1308 .. 1 18 [] 21.8 2e-05
DUF1292 1/1 1302 1309 .. 1 8 [. 2.1 6.1
HemolysinCabind 5/12 1309 1326 .. 1 18 [] 16.6 0.00072
DUF1769 1/2 1322 1330 .. 1 9 [. 3.2 3.8
HemolysinCabind 6/12 1327 1344 .. 1 18 [] 22.6 1.1e-05
HemolysinCabind 7/12 1354 1371 .. 1 18 [] 11.1 0.034
DUF1769 2/2 1358 1364 .. 1 7 [. 1.2 14
HemolysinCabind 8/12 1372 1389 .. 1 18 [] 23.9 4.6e-06
HemolysinCabind 9/12 1390 1407 .. 1 18 [] 21.4 2.5e-05
HemolysinCabind 10/12 1408 1425 .. 1 18 [] 16.6 0.00074
HemolysinCabind 11/12 1426 1443 .. 1 18 [] 17.5 0.00038
Ndc80_HEC 1/1 1429 1444 .. 217 232 .] 0.3 8.9
Peptidase_M24 1/1 1440 1454 .. 276 290 .] 0.3 8.2
HemolysinCabind 12/12 1444 1461 .. 1 18 [] 21.2 2.9e-05
EII-GUT 1/1 1471 1479 .. 1 9 [. 1.5 6.1
Flagellin_IN 1/1 1481 1508 .. 1 33 [. 2.2 9.4
StbA 1/1 1493 1507 .. 1 15 [. 0.4 7
Alignments of top-scoring domains:
P63C: domain 1 of 1, from 18 to 28: score 1.6, E = 8.1
*->QfLTpdIGHPkL<-*
Q+LTp+ HP L
gi|1194894 18 QHLTPE-SHPNL 28
Glyco_hydro_59: domain 1 of 1, from 29 to 45: score -1.5, E = 6.3
*->HsFEFAqFDnFrvEAtR<-*
HsF q nF+ E t
gi|1194894 29 HSFIISQTTNFLAEVTQ 45
DAHP_synth_1: domain 1 of 1, from 74 to 95: score 0.2, E = 6.2
CS C-TTSBSSSHBBHHHHHHHHHH
*->Lkygksetdacilweltelvle<-*
L+++ +et+a++l++ + + +
gi|1194894 74 LTPKTLETYAPLLKQWHKVLTA 95
His_kinase: domain 1 of 1, from 113 to 134: score 3.2, E = 3.5
*->reliqqLskllRysLkngeelv<-*
+el++qLs+l R ++ ++++l+
gi|1194894 113 QELVHQLSQLTRTNIAASTHLT 134
HemolysinCabind: domain 1 of 12, from 201 to 206: score 0.5, E = 57
CS SSCGEE
*->aGnDtl<-*
aG+Dt+
gi|1194894 201 AGDDTI 206
UPF0560: domain 1 of 1, from 255 to 263: score 1.0, E = 1.1
*->EERPLmvFN<-*
E+RPL+ +N
gi|1194894 255 EDRPLLFIN 263
Autotransporter: domain 1 of 1, from 289 to 324: score 1.6, E = 4.5
CS EEEEEEEEECTT EEEEE EEEEE.... TTEEEEE
*->lslgaGlelklg.snlsl.flnysaefg.sqlsdng<-*
+ +g+G++l +++ ++l++++++ ++ + +++g
gi|1194894 289 GGAGLGGGLFINsGDITLdNVTFEKNYAiGGDANSG 324
CBM_17_28: domain 1 of 1, from 300 to 312: score 0.5, E = 7.2
CS X...SSEEEEEEEEEE
*->nsdfaDvIsLDNIkvt<-*
n ++ I LDN+++
gi|1194894 300 N---SGDITLDNVTFE 312
Chlam_PMP: domain 1 of 3, from 308 to 334: score 9.0, E = 0.36
*->ditFsgNsa........aggGGAiyas<-*
++tF++N a +++ +++++ GG+++++
gi|1194894 308 NVTFEKNYAiggdansgGYAGGGLSGK 334
VirK: domain 1 of 1, from 451 to 468: score 1.9, E = 5.8
*->pdGtaefttyRYPvlsvptye<-*
++Gt++++ + ++s+++ +
gi|1194894 451 REGTLTIQNS---TFSNNSAQ 468
Chlam_PMP: domain 2 of 3, from 459 to 489: score 14.8, E = 0.0097
*->ditFsgNsa............aggGGAiyas<-*
++tFs+Nsa++++++++++++ g GGAi+
gi|1194894 459 NSTFSNNSAqggegrggsetgQGLGGAIFVP 489
Chordopox_G3: domain 1 of 1, from 498 to 505: score 0.8, E = 3.1
*->LPILLLSK<-*
LP+LLLS
gi|1194894 498 LPTLLLSN 505
DUF2381: domain 1 of 1, from 498 to 508: score 0.3, E = 7.6
*->lRtltlpnVrf<-*
l+tl l+nV+f
gi|1194894 498 LPTLLLSNVTF 508
Chlam_PMP: domain 3 of 3, from 505 to 513: score 0.4, E = 81
*->ditFsgNsa<-*
++tFs+N+a
gi|1194894 505 NVTFSDNTA 513
DUF1410: domain 1 of 1, from 514 to 530: score 3.1, E = 3.8
*->ladlnknlaNkkvkltF<-*
+d n++ +N +++++F
gi|1194894 514 SNDTNSESNNDNIYGVF 530
Peptidase_M26_N: domain 1 of 1, from 618 to 649: score 2.6, E = 2.2
*->eavepkleYYtgytlsTtmvydrGegeEtetlsdkk<-*
+a++p l+ +tgytls + + E +t+sdk+
gi|1194894 618 NAAFPTLDLDTGYTLS----FVAQVISEDNTDSDKN 649
Cadherin: domain 1 of 1, from 798 to 886: score 60.2, E = 1.5e-16
CS --EEE-SS...S---EEEEE---S..-TTTT----------SS----
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
ys+++ Ena++G +++v AtD+D g+N ++Y+i+ gn +g+F+
gi|1194894 798 YSFELVENAANGLVIGQVLATDPD---GDN--LTYNITTGNDNGIFA 839
CS B-TTSSEEE..E---S- --S.....S-B--EEE----.........S-
IdpdtGdnegiisttkp..LDREeifngeYeLtveAtDadpllasgggpp
I++dtG+ is++ +++LD + + Y+Ltve++D+ +
gi|1194894 840 INSDTGE----ISLANNnsLDFDTEP-TAYSLTVEVSDG----------S 874
CS --EEEE--EEE-
lsstatvtitVl<-*
l++t v ++++
gi|1194894 875 LTDTIDVAVNLT 886
PKD: domain 1 of 1, from 817 to 883: score 3.7, E = 1.3
CS .B.TT.SSECEEEEE-SS .SSSEEEECSSEEEEEE SS..
*->SydpdpGspvsysWdFGD.......ggspgttstepnvtHtY.skgs
++dpd G++++y + G++++ +++g++s n + ++++
gi|1194894 817 ATDPD-GDNLTYNITTGNdngifaiNSDTGEISLANNNSLDFdTE-- 860
CS ..SEEEEEEEEEEETTCEEEEEEEEEEE
VtpGtYtVtLtvsngvgsasattttvtV<-*
p+ Y++t+ vs+g +++ + v V
gi|1194894 861 --PTAYSLTVEVSDGSLTDT---IDVAV 883
OstA: domain 1 of 1, from 822 to 833: score 1.9, E = 4.4
*->GdkItydikegk<-*
Gd +ty+i++g
gi|1194894 822 GDNLTYNITTGN 833
PEN-2: domain 1 of 1, from 822 to 832: score 0.5, E = 7.3
*->gDllsFiiPDkLG<-*
gD+l+++i +G
gi|1194894 822 GDNLTYNIT--TG 832
PQQ: domain 1 of 1, from 826 to 847: score 4.5, E = 1.9
CS TEEEEETTTSEEEEEETTTTSE
*->gvvyvgtadGylyAlDakTGkv<-*
+ ++ ++ d+ ++A++ +TG++
gi|1194894 826 TYNITTGNDNGIFAINSDTGEI 847
PLAT: domain 1 of 1, from 864 to 906: score 1.5, E = 5.6
CS EEEEEEEEEEC.STTS-EEEEEEEEEEESSEEEEEEEEEEECE-...
*->vsyqlivatggdstgagttgkvgislyGengeseqipldkpelkslp
+s+++ v+ g+ t+++ ++ ++n +
gi|1194894 864 YSLTVEVSDGS------LTDTIDVAVNLTNVNE-------------- 890
CS ..-S-TTEEEEEEEEESS-
tlgagpgstfsftfdvded<-*
+ +s+ + + +++e+
gi|1194894 891 --VPD-NSEGETDGETPEN 906
Transglut_N: domain 1 of 1, from 864 to 873: score 1.2, E = 8.1
CS EEEEEEEECT
*->YrLtvevstp<-*
Y+Ltvevs++
gi|1194894 864 YSLTVEVSDG 873
BAT2_N: domain 1 of 2, from 1008 to 1062: score 1.6, E = 3.4
*->dqsdpkssdalpaqtpesqppavsqtsasslpk.tPppsqpatpevp
d s+ + +d ++++ pe+q+p v+ s++ ++ +tP ++ +tpevp
gi|1194894 1008 DNSEGE-TDGETPENPENQTPEVPDNSGGETDGeTPENPENQTPEVP 1053
ggakSWavasa<-*
S++ +++
gi|1194894 1054 --DNSGGETDG 1062
BAT2_N: domain 2 of 2, from 1063 to 1109: score 4.0, E = 0.65
*->lpaqtpesqppavsqtsasslpk.tPppsqpatpevpggakSWavas
++++ pe+q+p v+ s++ ++ +tP ++ +tpevp S++ ++
gi|1194894 1063 ETPENPENQTPEVPDNSGGETDGeTPENPENQTPEVP--DNSGGETD 1107
ak<-*
++
gi|1194894 1108 GE 1109
Baculo_FP: domain 1 of 1, from 1215 to 1233: score 1.6, E = 1.4
*->MdraedLINVpiLK.sLIkte<-*
d + LIN p LK++LI++e
gi|1194894 1215 -D-FISLINFPSLKpNLIRNE 1233
HemolysinCabind: domain 2 of 12, from 1255 to 1267: score 5.4, E = 1.8
CS E--SSS-EEEEES
*->yGGaGnDtLyGga<-*
+G +G+D +yG++
gi|1194894 1255 FGLEGDDNIYGTS 1267
Glyco_hydro_32C: domain 1 of 1, from 1269 to 1277: score 4.2, E = 1.1
CS EEEEEETTT
*->sVEsFgndG<-*
s E+Fgn+G
gi|1194894 1269 SLEIFGNKG 1277
HemolysinCabind: domain 3 of 12, from 1273 to 1290: score 7.1, E = 0.57
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G++GnD + G a +
gi|1194894 1273 FGNKGNDYIEGQANSEAI 1290
HemolysinCabind: domain 4 of 12, from 1291 to 1308: score 21.8, E = 2e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
yGG+ nD + G +GnDtl
gi|1194894 1291 YGGENNDQIKGENGNDTL 1308
DUF1292: domain 1 of 1, from 1302 to 1309: score 2.1, E = 6.1
*->EeGnEvlF<-*
E+Gn++lF
gi|1194894 1302 ENGNDTLF 1309
HemolysinCabind: domain 5 of 12, from 1309 to 1326: score 16.6, E = 0.00072
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G++ nD ++Gg+G+D++
gi|1194894 1309 FGDKDNDAITGGNGDDVI 1326
DUF1769: domain 1 of 2, from 1322 to 1330: score 3.2, E = 3.8
*->GddllFGND<-*
Gdd+++GN+
gi|1194894 1322 GDDVIYGNT 1330
HemolysinCabind: domain 6 of 12, from 1327 to 1344: score 22.6, E = 1.1e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
yG+ GnDtL G +GnD l
gi|1194894 1327 YGNTGNDTLEGAQGNDSL 1344
HemolysinCabind: domain 7 of 12, from 1354 to 1371: score 11.1, E = 0.034
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
GG GnD +G+ G+D+
gi|1194894 1354 KGGVGNDLVFGDIGDDIV 1371
DUF1769: domain 2 of 2, from 1358 to 1364: score 1.2, E = 14
*->GddllFG<-*
G+dl+FG
gi|1194894 1358 GNDLVFG 1364
HemolysinCabind: domain 8 of 12, from 1372 to 1389: score 23.9, E = 4.6e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
G++GnDtL+G++G Dt+
gi|1194894 1372 EGNEGNDTLHGNQGVDTI 1389
HemolysinCabind: domain 9 of 12, from 1390 to 1407: score 21.4, E = 2.5e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G++G+D +yGg+GnD+l
gi|1194894 1390 SGNDGDDLIYGGQGNDLL 1407
HemolysinCabind: domain 10 of 12, from 1408 to 1425: score 16.6, E = 0.00074
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G++G DtL+G++G+Dtl
gi|1194894 1408 DGNNGSDTLFGDNGDDTL 1425
HemolysinCabind: domain 11 of 12, from 1426 to 1443: score 17.5, E = 0.00038
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG G+D+L Gg+G+D+l
gi|1194894 1426 DGGFGDDSLIGGNGDDWL 1443
Ndc80_HEC: domain 1 of 1, from 1429 to 1444: score 0.3, E = 8.9
*->fvDdslvgketedilv<-*
f+Ddsl+g + d lv
gi|1194894 1429 FGDDSLIGGNGDDWLV 1444
Peptidase_M24: domain 1 of 1, from 1440 to 1454: score 0.3, E = 8.2
CS EEEEECSSCEECSTC
*->DdivVtedGfenLTf<-*
Dd +V+++G+++LT
gi|1194894 1440 DDWLVGAEGNDTLTG 1454
HemolysinCabind: domain 12 of 12, from 1444 to 1461: score 21.2, E = 2.9e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
G +GnDtL+Gg+G D++
gi|1194894 1444 VGAEGNDTLTGGEGRDRF 1461
EII-GUT: domain 1 of 1, from 1471 to 1479: score 1.5, E = 6.1
*->fLvkfAegF<-*
f+++fA+gF
gi|1194894 1471 FITDFADGF 1479
Flagellin_IN: domain 1 of 1, from 1481 to 1508: score 2.2, E = 9.4
*->tltinggggkensvadgvdislsagdslaalad<-*
+++++gg + e +i+ + g++l lad
gi|1194894 1481 KIALTGGLTFEQ-----LEITSDNGSTLIKLAD 1508
StbA: domain 1 of 1, from 1493 to 1507: score 0.4, E = 7
CS -EEEEEE-SSEEEEE
*->MkifiDDGSTNIKLA<-*
+ i D GST IKLA
gi|1194894 1493 LEITSDNGSTLIKLA 1507
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