hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 119489792.fa
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Query sequence: gi|119489792|ref|ZP_01622550.1|
Accession: [none]
Description: hypothetical protein L8106_10612 [Lyngbya sp. PCC 8106]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PKD PKD domain 62.3 1.3e-18 2
SoxZ Sulphur oxidation protein SoxZ 8.9 0.037 3
HYR HYR domain 8.6 0.064 3
DUF1652 Protein of unknown function (DUF1652) 7.3 0.33 1
POPLD POPLD (NUC188) domain 2.4 0.63 1
HSDR_N Type I restriction enzyme R protein N 3.0 1.2 1
DFDF DFDF motif 6.1 1.4 1
A2M_N_2 Alpha-2-macroglobulin family N-termin 3.8 1.8 1
RWD RWD domain 3.6 2.2 1
Phi-29_GP3 Phi-29 DNA terminal protein GP3 1.1 2.6 1
MORN_2 MORN repeat variant 5.3 2.8 1
DAP3 Mitochondrial ribosomal death-associa 1.1 3.5 1
Parvo_coat_N Parvovirus coat protein VP1 2.3 3.6 1
DUF11 Domain of unknown function DUF11 3.8 3.7 1
DUF1269 Protein of unknown function (DUF1269) 3.3 4 1
TGF_beta_GS Transforming growth factor beta type 2.7 5.3 1
DUF2597 Protein of unknown function (DUF2598) -0.5 5.4 1
Vmethyltransf Viral methyltransferase 0.4 5.5 1
Cas_Csa5 CRISPR-associated protein (Cas_Csa5) 1.9 5.5 2
BING4CT BING4CT (NUC141) domain 3.2 5.9 1
RTC_insert RNA 3'-terminal phosphate cyclase (RT 1.5 6.2 1
FTP Fungalysin/Thermolysin Propeptide Mot 2.8 6.4 1
Kua-UEV1_localn Kua-ubiquitin conjugating enzyme hybr 0.8 6.6 1
DUF1445 Protein of unknown function (DUF1445) 0.8 6.8 1
MutH DNA mismatch repair enzyme MutH 1.7 6.9 1
PRiA4_ORF3 Plasmid pRiA4b ORF-3-like protein 0.9 7.2 1
G-gamma GGL domain 2.2 7.3 1
DUF1846 Domain of unknown function (DUF1846) 0.1 7.5 1
AcetDehyd-dimer Prokaryotic acetaldehyde dehydrogenas 0.4 8 1
DUF1688 Protein of unknown function (DUF1688) -1.9 8.8 1
RFC-E_C Clamp-loader complex subunit E C-term 1.1 8.9 1
SPC25 Microsomal signal peptidase 25 kDa su 0.3 8.9 1
I-set Immunoglobulin I-set domain 1.7 9.2 1
ATP-synt_ab ATP synthase alpha/beta family, nucle 0.2 9.2 1
DUF257 Pyrococcus protein of unknown functio 0.3 9.3 1
BLUF Sensors of blue-light using FAD 1.5 9.3 1
FCP1_C FCP1, C-terminal -0.6 9.4 1
FlgN FlgN protein 1.0 9.4 1
He_PIG_assoc He_PIG associated, NEW1 domain of bac 2.2 9.5 1
CBM_6 Carbohydrate binding module (family 6 0.5 9.8 1
Tfb2 Transcription factor Tfb2 -3.1 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BING4CT 1/1 33 39 .. 74 80 .] 3.2 5.9
RTC_insert 1/1 52 65 .. 1 14 [. 1.5 6.2
ATP-synt_ab 1/1 87 94 .. 204 211 .] 0.2 9.2
DUF1269 1/1 109 121 .. 43 55 .. 3.3 4
Parvo_coat_N 1/1 113 126 .. 51 64 .] 2.3 3.6
DUF1445 1/1 217 223 .. 137 143 .] 0.8 6.8
HSDR_N 1/1 242 269 .. 1 28 [. 3.0 1.2
MORN_2 1/1 341 362 .. 1 22 [] 5.3 2.8
He_PIG_assoc 1/1 359 368 .. 1 13 [. 2.2 9.5
G-gamma 1/1 368 381 .. 41 55 .] 2.2 7.3
POPLD 1/1 374 383 .. 98 107 .] 2.4 0.63
DFDF 1/1 378 389 .. 1 12 [. 6.1 1.4
DUF1846 1/1 381 392 .. 492 503 .] 0.1 7.5
Kua-UEV1_localn 1/1 465 473 .. 1 9 [. 0.8 6.6
RFC-E_C 1/1 470 479 .. 90 99 .] 1.1 8.9
DUF257 1/1 495 508 .. 212 225 .] 0.3 9.3
DAP3 1/1 531 540 .. 369 378 .] 1.1 3.5
CBM_6 1/1 557 592 .. 1 46 [. 0.5 9.8
PKD 1/2 562 631 .. 1 92 [] 57.7 3.3e-17
PRiA4_ORF3 1/1 568 592 .. 93 117 .. 0.9 7.2
FlgN 1/1 596 612 .. 132 150 .] 1.0 9.4
DUF1688 1/1 646 650 .. 423 427 .] -1.9 8.8
SPC25 1/1 671 697 .. 159 185 .] 0.3 8.9
Tfb2 1/1 691 695 .. 407 411 .] -3.1 9.8
FCP1_C 1/1 696 701 .. 291 296 .] -0.6 9.4
FTP 1/1 721 737 .. 1 17 [. 2.8 6.4
Phi-29_GP3 1/1 730 766 .. 233 268 .] 1.1 2.6
RWD 1/1 740 779 .. 14 55 .. 3.6 2.2
DUF2597 1/1 794 802 .. 126 134 .] -0.5 5.4
BLUF 1/1 800 810 .. 87 97 .] 1.5 9.3
DUF11 1/1 837 891 .. 1 54 [. 3.8 3.7
Cas_Csa5 1/2 909 918 .. 1 10 [. 0.9 10
SoxZ 1/3 910 936 .. 75 104 .] 2.9 2.5
HYR 1/3 911 936 .. 59 86 .] 8.0 0.093
MutH 1/1 1115 1133 .. 1 19 [. 1.7 6.9
TGF_beta_GS 1/1 1146 1165 .. 1 19 [. 2.7 5.3
SoxZ 2/3 1234 1256 .. 82 104 .] 2.2 4.2
AcetDehyd-dimer 1/1 1243 1264 .. 133 154 .] 0.4 8
I-set 1/1 1245 1256 .. 85 96 .] 1.7 9.2
HYR 2/3 1328 1353 .. 59 86 .] 0.1 21
PKD 2/2 1336 1353 .. 75 92 .] 4.6 0.71
A2M_N_2 1/1 1378 1419 .. 1 43 [. 3.8 1.8
DUF1652 1/1 1386 1401 .. 35 51 .. 7.3 0.33
Cas_Csa5 2/2 1423 1432 .. 1 10 [. 0.9 10
SoxZ 3/3 1424 1450 .. 75 104 .] 3.9 1.3
HYR 3/3 1425 1450 .. 59 86 .] 0.4 17
Vmethyltransf 1/1 1643 1665 .. 1 23 [. 0.4 5.5
Alignments of top-scoring domains:
BING4CT: domain 1 of 1, from 33 to 39: score 3.2, E = 5.9
*->ElIsLdP<-*
E+I+L+P
gi|1194897 33 ETITLNP 39
RTC_insert: domain 1 of 1, from 52 to 65: score 1.5, E = 6.2
*->terGkikkirGisy<-*
t+++++++i++is+
gi|1194897 52 TQKSNVESIHIISH 65
ATP-synt_ab: domain 1 of 1, from 87 to 94: score 0.2, E = 9.2
CS B-TTT-B-
RF xxxxxxxx
*->IDvllSvS<-*
ID+l+S+S
gi|1194897 87 IDPLMSWS 94
DUF1269: domain 1 of 1, from 109 to 121: score 3.3, E = 4
*->DvGIDDdFikelg<-*
D+G D++Fik+l+
gi|1194897 109 DIGLDENFIKQLA 121
Parvo_coat_N: domain 1 of 1, from 113 to 126: score 2.3, E = 3.6
*->DeeFikeLkddtsF<-*
De+Fik+L + t+
gi|1194897 113 DENFIKQLANLTGA 126
DUF1445: domain 1 of 1, from 217 to 223: score 0.8, E = 6.8
*->GhMLiTD<-*
G M+iTD
gi|1194897 217 GEMYITD 223
HSDR_N: domain 1 of 1, from 242 to 269: score 3.0, E = 1.2
*->klsEeeleqklilplLksLGwdylnpkd<-*
sE+ l ++++p ++s G+ yl++ +
gi|1194897 242 TSSEKGLIDIAVDPDFESNGYFYLYYTK 269
MORN_2: domain 1 of 1, from 341 to 362: score 5.3, E = 2.8
*->keGeekfyyenGklkeeieykn<-*
+eG+++ ++++G + ++n
gi|1194897 341 FEGKVLRFNPDGTVPNDNPFIN 362
He_PIG_assoc: domain 1 of 1, from 359 to 368: score 2.2, E = 9.5
*->PqINsPhaiGaYP<-*
P IN+P Ga+P
gi|1194897 359 PFINTP---GARP 368
G-gamma: domain 1 of 1, from 368 to 381: score 2.2, E = 7.3
*->PLltGpppskNPFie<-*
P ++ + NPF++
gi|1194897 368 PEIWAYGVR-NPFRS 381
POPLD: domain 1 of 1, from 374 to 383: score 2.4, E = 0.63
*->eigdpFsCDW<-*
++ +pF +DW
gi|1194897 374 GVRNPFRSDW 383
DFDF: domain 1 of 1, from 378 to 389: score 6.1, E = 1.4
*->kpdeDFDFesnN<-*
+ +D DF++nN
gi|1194897 378 PFRSDWDFQTNN 389
DUF1846: domain 1 of 1, from 381 to 392: score 0.1, E = 7.5
*->sDPkYqskkLYy<-*
sD +q+++LY+
gi|1194897 381 SDWDFQTNNLYI 392
Kua-UEV1_localn: domain 1 of 1, from 465 to 473: score 0.8, E = 6.6
*->yllADFaSG<-*
y++ADF+ G
gi|1194897 465 YFFADFVAG 473
RFC-E_C: domain 1 of 1, from 470 to 479: score 1.1, E = 8.9
*->FvAkfMclyk<-*
FvA+ M+ +k
gi|1194897 470 FVAGTMQYLK 479
DUF257: domain 1 of 1, from 495 to 508: score 0.3, E = 9.3
*->rikKSlnpelvgke<-*
+++++ n+e++g++
gi|1194897 495 TVVDAFNFEEDGPV 508
DAP3: domain 1 of 1, from 531 to 540: score 1.1, E = 3.5
*->nGNprelekl<-*
+GNp+e ++
gi|1194897 531 GGNPGEIRRI 540
CBM_6: domain 1 of 1, from 557 to 592: score 0.5, E = 9.8
CS ETTG-SEEESTEEEEEES.TT.SSEEEE---TT-EEEEEEEEESSS
*->eAEtydkqsGvstektttgygGgGyavgyinnGDWiaykdvdfgsg<
+A t++k+ G + + +v ++GD ++y+ dfg+g
gi|1194897 557 QATTATKGNGLTV---------DFTGVATDADGDSLSYT-WDFGDG 592
CS
-*
gi|1194897 - -
PKD: domain 1 of 2, from 562 to 631: score 57.7, E = 3.3e-17
CS EESS.....SSSEBTTEEEEEEECT.B.TT.SSECEEEEE-SS.SSS
*->vsasaveegpsvvalgetVtFtassSydpdpGspvsysWdFGDggsp
+++ g+tV Ft+ + +d+d G+ +sy+WdFGD
gi|1194897 562 TKGN-----------GLTVDFTGVA-TDAD-GDSLSYTWDFGD---- 591
CS EEEECSSEEEEEESS....SEEEEEEEEEEETTCEEEEEEEEEEE
gttstepnvtHtYskgsVtpGtYtVtLtvsngvgsasattttvtV<-*
g+ t+ n++HtY+ G+Yt +L vs+g +s ++ +V
gi|1194897 592 GNQATGANISHTYTA----NGQYTPRLIVSDGQEQDSYL-LSPVV 631
PRiA4_ORF3: domain 1 of 1, from 568 to 592: score 0.9, E = 7.2
*->rvrLgdvvtddegdrftYtYDFGDg<-*
+v++ v td gd++ Yt DFGDg
gi|1194897 568 TVDFTGVATDADGDSLSYTWDFGDG 592
FlgN: domain 1 of 1, from 596 to 612: score 1.0, E = 9.4
*->qgsrgassttYgadGqtst<-*
+g ++ s tY+a+Gq+++
gi|1194897 596 TG--ANISHTYTANGQYTP 612
DUF1688: domain 1 of 1, from 646 to 650: score -1.9, E = 8.8
*->DGTVF<-*
DGT+F
gi|1194897 646 DGTIF 650
SPC25: domain 1 of 1, from 671 to 697: score 0.3, E = 8.9
*->dedGvLvedlykkevsrLhnaLatekk<-*
d dG L ++ y +++ Lhn a +
gi|1194897 671 DADGSLTNNSYSWDIDFLHNTHAHPEL 697
Tfb2: domain 1 of 1, from 691 to 695: score -3.1, E = 9.8
*->thAHP<-*
thAHP
gi|1194897 691 THAHP 695
FCP1_C: domain 1 of 1, from 696 to 701: score -0.6, E = 9.4
CS HCCCH-
*->ELNDfm<-*
ELNDf+
gi|1194897 696 ELNDFV 701
FTP: domain 1 of 1, from 721 to 737: score 2.8, E = 6.4
*->dlkvvktttdpnGkthv<-*
+++++ t+td++G t +
gi|1194897 721 GFEFILTVTDSDGLTTT 737
Phi-29_GP3: domain 1 of 1, from 730 to 766: score 1.1, E = 2.6
*->DSEgelveasEsil.ekirsYledYerGdvdLsLKGF<-*
DS g + si +eki +d Gd+d L GF
gi|1194897 730 DSDGLTTTEAKSIFpEKIDLAFNDNLPGDFDFTLDGF 766
RWD: domain 1 of 1, from 740 to 779: score 3.6, E = 2.2
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxx
*->eSIYpdefelegtievtessppvftikl..dedessplpslvLe<-*
+SI+p+++ + ++++ p +f ++l++++ +ss++ +l++e
gi|1194897 740 KSIFPEKI----DLAFNDNLPGDFDFTLdgFTQTSSDNNPLTVE 779
DUF2597: domain 1 of 1, from 794 to 802: score -0.5, E = 5.4
*->VrINGVPYL<-*
V ING+ YL
gi|1194897 794 VTINGIEYL 802
BLUF: domain 1 of 1, from 800 to 810: score 1.5, E = 9.3
CS S-SSSSECCEE
*->eRrFpdWsMgf<-*
e +F++Ws g
gi|1194897 800 EYLFDNWSVGS 810
DUF11: domain 1 of 1, from 837 to 891: score 3.8, E = 3.7
*->ttgatddlppnnnanatvtvtpvadlvitktvsnatarpGdtvtYT.
+ ++d+ pp +n+ + +vt ++d ++++ ++++ a+pGdt+t T+
gi|1194897 837 NDPNPDPEPPVANDDSINIVTGSQDNALNVLANDTDADPGDTLTITg 883
iTVtNtGp<-*
++ tN+G+
gi|1194897 884 VSATNNGG 891
Cas_Csa5: domain 1 of 2, from 909 to 918: score 0.9, E = 10
*->fFiysespty<-*
+F+ +es+ty
gi|1194897 909 GFVGTESFTY 918
SoxZ: domain 1 of 3, from 910 to 936: score 2.9, E = 2.5
CS EE--S-EE.EEEEEEETTS-EEEEEEEE--
*->fkadkaGdelkfsWtDnkGssetaeakItv<-*
f++ + ++ ++ D++G++ +a ++++v
gi|1194897 910 FVGTE--S-FTYTIADSTGNTSSAQVSLNV 936
HYR: domain 1 of 3, from 911 to 936: score 8.0, E = 0.093
*->vGEettVtYtatDnaGNeAdsCtFtVtV<-*
vG +++ tYt D+ GN+ s ++ +V
gi|1194897 911 VG-TESFTYTIADSTGNTS-SAQVSLNV 936
MutH: domain 1 of 1, from 1115 to 1133: score 1.7, E = 6.9
*->yhLGataGSkpeqDF.vphl<-*
+ LGa+++S p D++v+++
gi|1194897 1115 V-LGAEIDSNPFVDMdVAEI 1133
TGF_beta_GS: domain 1 of 1, from 1146 to 1165: score 2.7, E = 5.3
*->keladlledt.ttSGSGSGl<-*
+++ +l ++ SGSGSG+
gi|1194897 1146 TQVNNYLQQKyFGSGSGSGN 1165
SoxZ: domain 2 of 3, from 1234 to 1256: score 2.2, E = 4.2
CS E.EEEEEEETTS-EEEEEEEE--
*->delkfsWtDnkGssetaeakItv<-*
d+++ s+tD +G++ +a+++++v
gi|1194897 1234 DTFNYSITDGNGGTDQATVTVNV 1256
AcetDehyd-dimer: domain 1 of 1, from 1243 to 1264: score 0.4, E = 8
CS EEE-EEEEEEEEEE----SSS-
*->gegeglkvsvfLEVeGaGdYLP<-*
g g++++ +v++ V G G LP
gi|1194897 1243 GNGGTDQATVTVNVVGTGNGLP 1264
I-set: domain 1 of 1, from 1245 to 1256: score 1.7, E = 9.2
CS TEEEEEEEEEEE
*->aGeaeasaeLtV<-*
+G+++a+++++V
gi|1194897 1245 GGTDQATVTVNV 1256
HYR: domain 2 of 3, from 1328 to 1353: score 0.1, E = 21
*->vGEettVtYtatDnaGNeAdsCtFtVtV<-*
+G ++t tYt++D +G + + t+t +V
gi|1194897 1328 TG-TETFTYTVSDGNGGVN-TATVTMNV 1353
PKD: domain 2 of 2, from 1336 to 1353: score 4.6, E = 0.71
CS EEEETTCEEEEEEEEEEE
*->tvsngvgsasattttvtV<-*
tvs+g+g +++ t+t+ V
gi|1194897 1336 TVSDGNGGVNTATVTMNV 1353
A2M_N_2: domain 1 of 1, from 1378 to 1419: score 3.8, E = 1.8
*->LklsldkkeykvGetakvt.vtgspfpagkfaylvverGkilas<-*
L++ ++ + + G+t+++t+v ++ ++g+ + + ++++++++
gi|1194897 1378 LDVLVNDTDPDSGDTLTITgVS-ATNNGGT-VSINASNDGLIYT 1419
DUF1652: domain 1 of 1, from 1386 to 1401: score 7.3, E = 0.33
*->dpaSGrvdLvvtGlsls<-*
dp+SG++ L++tG+s++
gi|1194897 1386 DPDSGDT-LTITGVSAT 1401
Cas_Csa5: domain 2 of 2, from 1423 to 1432: score 0.9, E = 10
*->fFiysespty<-*
+F+ +es+ty
gi|1194897 1423 GFVGTESFTY 1432
SoxZ: domain 3 of 3, from 1424 to 1450: score 3.9, E = 1.3
CS EE--S-EE.EEEEEEETTS-EEEEEEEE--
*->fkadkaGdelkfsWtDnkGssetaeakItv<-*
f++ + ++ ++ D++Gs+ +a ++++v
gi|1194897 1424 FVGTE--S-FTYTIADSTGSTSSAQVSLNV 1450
HYR: domain 3 of 3, from 1425 to 1450: score 0.4, E = 17
*->vGEettVtYtatDnaGNeAdsCtFtVtV<-*
vG +++ tYt D+ G + s ++ +V
gi|1194897 1425 VG-TESFTYTIADSTGSTS-SAQVSLNV 1450
Vmethyltransf: domain 1 of 1, from 1643 to 1665: score 0.4, E = 5.5
*->skrrkkvnvrfaLSeeqqniLrr<-*
++ ++ +++++aLSe++q + +
gi|1194897 1643 MDVAEILVFDRALSEAEQTQVNN 1665
//