hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 119493847.fa
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Query sequence: gi|119493847|ref|ZP_01624413.1|
Accession: [none]
Description: Integrin alpha chain [Lyngbya sp. PCC 8106]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Adeno_shaft Adenoviral fibre protein (repeat/shaf 8.5 0.37 1
Phage_term_smal Phage small terminase subunit 5.0 0.64 1
HSP70 Hsp70 protein 3.1 0.82 1
S-methyl_trans Homocysteine S-methyltransferase 1.9 1.8 1
MeMO_Hyd_G Methane monooxygenase, hydrolase gamm 2.4 1.9 1
FAD_binding_2 FAD binding domain 1.4 2 1
DUF320 Small secreted domain (DUF320) 3.9 2.6 1
CfAFP Choristoneura fumiferana antifreeze p 1.4 4.2 1
PalH PalH/RIM21 0.4 4.6 1
SLT Transglycosylase SLT domain 2.3 4.8 1
DUF1795 Domain of unknown function (DUF1795) 2.0 5.1 1
DUF1949 Domain of unknown function (DUF1949) 3.9 5.6 1
Raffinose_syn Raffinose synthase or seed inhibition -0.9 5.9 1
IL4Ra_N Interleukin-4 receptor alpha chain, N 1.5 6.8 1
HrpA_pilin HrpA pilus formation protein -0.6 8.2 1
Rick_17kDa_Anti Rickettsia 17 kDa surface antigen 2.2 8.3 1
MMTV_SAg Mouse mammary tumour virus superantig -1.4 9.1 1
DUF2233 Predicted periplasmic protein (DUF223 0.2 9.4 1
Fim-adh_lectin Fimbrial adhesin F17-AG, lectin domai -0.8 9.5 1
CBM_4_9 Carbohydrate binding domain 0.7 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
IL4Ra_N 1/1 3 10 .. 89 96 .] 1.5 6.8
MMTV_SAg 1/1 16 55 .. 276 315 .] -1.4 9.1
PalH 1/1 23 39 .. 1 18 [. 0.4 4.6
DUF1949 1/1 140 154 .. 42 56 .] 3.9 5.6
DUF1795 1/1 182 201 .. 119 138 .] 2.0 5.1
SLT 1/1 209 230 .. 116 137 .] 2.3 4.8
Phage_term_smal 1/1 232 253 .. 112 133 .] 5.0 0.64
HrpA_pilin 1/1 295 305 .. 277 286 .] -0.6 8.2
Raffinose_syn 1/1 348 368 .. 1 22 [. -0.9 5.9
DUF2233 1/1 359 385 .. 1 28 [. 0.2 9.4
S-methyl_trans 1/1 411 421 .. 1 11 [. 1.9 1.8
Rick_17kDa_Anti 1/1 472 481 .. 1 10 [. 2.2 8.3
FAD_binding_2 1/1 546 557 .. 564 575 .] 1.4 2
Fim-adh_lectin 1/1 598 609 .. 1 12 [. -0.8 9.5
CfAFP 1/1 740 791 .. 89 138 .] 1.4 4.2
DUF320 1/1 820 842 .. 38 60 .] 3.9 2.6
Adeno_shaft 1/1 879 896 .. 1 18 [. 8.5 0.37
CBM_4_9 1/1 905 918 .. 1 16 [. 0.7 9.9
HSP70 1/1 918 925 .. 1 8 [. 3.1 0.82
MeMO_Hyd_G 1/1 1009 1016 .. 1 8 [. 2.4 1.9
Alignments of top-scoring domains:
IL4Ra_N: domain 1 of 1, from 3 to 10: score 1.5, E = 6.8
CS EE-CCCSB
*->SfkPSqnV<-*
Sf+PSqn
gi|1194938 3 SFTPSQNL 10
MMTV_SAg: domain 1 of 1, from 16 to 55: score -1.4, E = 9.1
*->qvHDYiYLgtglnslwkkvfdytkEgavakllenkkattl<-*
+v DY YL g+ + ++ +++ + v ++ e+ +a+
gi|1194938 16 KVEDYEYLCQGVLLGSEVIILNSNQDGVEQITEHLQARIR 55
PalH: domain 1 of 1, from 23 to 39: score 0.4, E = 4.6
*->gCsiyaLpsGglislnsy<-*
C++++L s+ +i+lns+
gi|1194938 23 LCQGVLLGSE-VIILNSN 39
DUF1949: domain 1 of 1, from 140 to 154: score 3.9, E = 5.6
*->veaFqakltelTnGr<-*
+++F++k+ +lT+++
gi|1194938 140 ISPFIQKIQDLTGAN 154
DUF1795: domain 1 of 1, from 182 to 201: score 2.0, E = 5.1
*->spgpltdeqrahwaailaSf<-*
sp ++t++ ++ +a++l +f
gi|1194938 182 SPLAFTESVKENYAGVLVTF 201
SLT: domain 1 of 1, from 209 to 230: score 2.3, E = 4.8
CS H-GGG---STTTTTTSGGG-HH
*->aGpgrvrrwlkytgakakkeyi<-*
aG+g +r++++++ ++++++i
gi|1194938 209 AGAGSLRDAIEQANTNDEDDII 230
Phage_term_smal: domain 1 of 1, from 232 to 253: score 5.0, E = 0.64
*->vDvalLqetaeLTdqaDmPDeV<-*
+D+al+ +t++LTd + + D
gi|1194938 232 FDPALSGQTINLTDRLNINDNN 253
HrpA_pilin: domain 1 of 1, from 295 to 305: score -0.6, E = 8.2
*->taqNA.kGIsY<-*
t qNA++GI+Y
gi|1194938 295 TVQNArTGIQY 305
Raffinose_syn: domain 1 of 1, from 348 to 368: score -0.9, E = 5.9
*->fslsdgklvvkngktiLtdVPd<-*
+sls+++ ++++ t+ Pd
gi|1194938 348 ISLSGSNSIIQG-NTFIASTPD 368
DUF2233: domain 1 of 1, from 359 to 385: score 0.2, E = 9.4
*->gteytvceVdpakddLrLfwkdpvdGaP<-*
g+++++ + d++ +r+f + + +a+
gi|1194938 359 GNTFIASTPDAQENGIRVFTQGD-ETAT 385
S-methyl_trans: domain 1 of 1, from 411 to 421: score 1.9, E = 1.8
CS HHTT--EE--T
*->vlvlDGgmGTe<-*
+l+ DG++GT+
gi|1194938 411 ILINDGAIGTQ 421
Rick_17kDa_Anti: domain 1 of 1, from 472 to 481: score 2.2, E = 8.3
*->tgiGaliGAv<-*
+++G++iG+v
gi|1194938 472 NTTGTIIGGV 481
FAD_binding_2: domain 1 of 1, from 546 to 557: score 1.4, E = 2
CS TTTTS--TTSHH
*->vhGanrlgGnsL<-*
++G+n+++Gn++
gi|1194938 546 IGGVNPGEGNTI 557
Fim-adh_lectin: domain 1 of 1, from 598 to 609: score -0.8, E = 9.5
*->vsFiGstEnDvG<-*
v Gst nD+G
gi|1194938 598 VRIDGSTNNDIG 609
CfAFP: domain 1 of 1, from 740 to 791: score 1.4, E = 4.2
CS EEEEEEEES-E EESEEEEEEEEEEES-EEETTEE-S-SS-EEES-
*->rydGvyitsst..ttgtrisGPgCsistCtitrGvaaPsAaCkisGC
+ +G+ i ss ++t g + +G g is ti + v + + + +i G
gi|1194938 740 QNNGILIESSAgnTIGGSEAGQGNVISGNTINGLVLSTANSNQIIGN 786
CS EEEE-
tlrAn<-*
+ n
gi|1194938 787 LIGTN 791
DUF320: domain 1 of 1, from 820 to 842: score 3.9, E = 2.6
*->vcGNtvdVvGllNPAfGNeCand<-*
++GNtv+ v + N+ GN+ + +
gi|1194938 820 ISGNTVNGVSIVNASSGNQIQGN 842
Adeno_shaft: domain 1 of 1, from 879 to 896: score 8.5, E = 0.37
CS S--EEE-B-TTEEE-TS-
*->nnsLtlntgpGLtvtnna<-*
n+++ ntg+G tvt+n+
gi|1194938 879 ANTIAFNTGDGVTVTSNT 896
CBM_4_9: domain 1 of 1, from 905 to 918: score 0.7, E = 9.9
*->gnlikngtFEdpggls<-*
+n+++ngt Ed +++
gi|1194938 905 NNIFSNGTAED--NTA 918
HSP70: domain 1 of 1, from 918 to 925: score 3.1, E = 0.82
CS XXXXXXXX
*->viGIDLGT<-*
+iGIDLG+
gi|1194938 918 AIGIDLGN 925
MeMO_Hyd_G: domain 1 of 1, from 1009 to 1016: score 2.4, E = 1.9
CS SSBHHHHH
*->IHeNdTRd<-*
IH+N TR+
gi|1194938 1009 IHSNFTRN 1016
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