hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 119510116.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|119510116|ref|ZP_01629255.1|
Accession: [none]
Description: Chi [Nodularia spumigena CCY9414]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Glyco_hydro_18 Glycosyl hydrolases family 18 354.1 2.7e-103 1
PPC Bacterial pre-peptidase C-terminal do 18.0 0.00018 1
Peptidase_M43 Pregnancy-associated plasma protein-A 8.7 0.023 1
Peptidase_M10 Matrixin 6.2 0.032 1
Reprolysin Reprolysin (M12B) family zinc metallo 8.4 0.076 1
Calx-beta Calx-beta domain 7.0 0.35 1
Peptidase_M66 Peptidase M66 4.1 0.39 1
Peptidase_M54 Peptidase family M54 4.5 0.51 1
Glyco_hydro_11 Glycosyl hydrolases family 11 4.9 0.54 1
DUF1628 Protein of unknown function (DUF1628) 4.6 0.59 1
Flu_B_M2 Influenza B matrix protein 2 (BM2) 4.0 0.83 1
DUF1610 Domain of unknown function (DUF1610) 7.1 0.88 1
Astacin Astacin (Peptidase family M12A) 3.3 1.1 1
DUF1508 Domain of unknown function (DUF1508) 4.6 1.2 3
CelD_N N-terminal ig-like domain of cellulas 3.2 1.7 1
Rsbr_N Rsbr N terminal 1.0 1.8 1
UAF_Rrn10 UAF complex subunit Rrn10 3.3 2 1
XisI XisI protein 2.9 2.3 1
FGGY_C FGGY family of carbohydrate kinases, 1.7 3.3 1
Secretin_N_2 Secretin N-terminal domain 2.5 3.3 1
DUF1343 Protein of unknown function (DUF1343) 1.1 3.4 1
MAM33 Mitochondrial glycoprotein 1.3 4.2 1
LIM LIM domain 2.7 4.4 1
SPOUT_MTase Predicted SPOUT methyltransferase 0.2 4.4 1
DUF840 Lagovirus protein of unknown function 2.2 5.1 1
CAF1 CAF1 family ribonuclease -0.1 5.4 1
DRMBL DNA repair metallo-beta-lactamase 1.8 5.9 1
Motilin_ghrelin Motilin/ghrelin 3.5 6 1
GTPase_binding GTPase binding 2.0 6.4 1
Herpes_UL55 Herpesvirus UL55 protein 0.6 6.4 1
HTH_6 Helix-turn-helix domain, rpiR family 1.6 6.6 1
PhnA PhnA protein 3.2 7 2
AP_endonuc_2 Xylose isomerase-like TIM barrel 0.6 7.5 1
L51_S25_CI-B8 Mitochondrial ribosomal protein L51 / 3.4 7.5 1
DUF241 Arabidopsis protein of unknown functi -1.3 7.6 1
RGS-like Regulator of G protein signalling-lik -0.6 7.9 1
EB_dh Ethylbenzene dehydrogenase -0.2 8.2 1
Penicil_amidase Penicillin amidase -1.6 8.2 1
Phage_30_3 Bacteriophage protein GP30.3 0.9 8.5 1
Phage_fiber_2 Phage tail fibre repeat 1.3 8.9 1
UPF0302 UPF0302 domain 1.4 8.9 1
Hexokinase_1 Hexokinase -0.3 8.9 1
iPGM_N BPG-independent PGAM N-terminus (iPGM -0.3 9.1 1
Tail_tube Phage tail tube protein 1.4 9.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Flu_B_M2 1/1 49 88 .. 68 109 .] 4.0 0.83
DRMBL 1/1 54 71 .. 1 18 [. 1.8 5.9
EB_dh 1/1 57 68 .. 400 411 .] -0.2 8.2
DUF1343 1/1 124 131 .. 1 8 [. 1.1 3.4
Phage_fiber_2 1/1 139 167 .. 16 44 .] 1.3 8.9
DUF1610 1/1 206 220 .. 1 15 [. 7.1 0.88
LIM 1/1 206 216 .. 1 11 [. 2.7 4.4
Herpes_UL55 1/1 284 304 .. 1 21 [. 0.6 6.4
Motilin_ghrelin 1/1 285 297 .. 1 13 [. 3.5 6
Reprolysin 1/1 384 403 .. 132 151 .. 8.4 0.076
Astacin 1/1 387 398 .. 88 99 .. 3.3 1.1
Peptidase_M66 1/1 389 403 .. 213 229 .. 4.1 0.39
Peptidase_M10 1/1 390 400 .. 128 138 .. 6.2 0.032
Peptidase_M43 1/1 390 400 .. 1 11 [. 8.7 0.023
Peptidase_M54 1/1 390 400 .. 154 164 .. 4.5 0.51
iPGM_N 1/1 459 475 .. 13 29 .. -0.3 9.1
Glyco_hydro_11 1/1 492 514 .. 1 23 [. 4.9 0.54
PPC 1/1 495 563 .. 1 85 [] 18.0 0.00018
DUF241 1/1 519 538 .. 1 20 [. -1.3 7.6
Hexokinase_1 1/1 519 542 .. 210 232 .] -0.3 8.9
Tail_tube 1/1 550 565 .. 1 17 [. 1.4 9.2
CelD_N 1/1 554 568 .. 85 107 .] 3.2 1.7
Calx-beta 1/1 653 692 .. 68 109 .] 7.0 0.35
Secretin_N_2 1/1 685 704 .. 86 107 .] 2.5 3.3
DUF1628 1/1 720 741 .. 74 95 .. 4.6 0.59
DUF1508 1/3 860 866 .. 1 7 [. 1.5 11
PhnA 1/2 865 883 .. 37 58 .] 1.6 18
DUF840 1/1 1008 1043 .. 80 114 .] 2.2 5.1
DUF1508 2/3 1016 1022 .. 1 7 [. 1.5 11
PhnA 2/2 1021 1039 .. 37 58 .] 1.6 18
DUF1508 3/3 1172 1178 .. 1 7 [. 1.5 11
RGS-like 1/1 1173 1186 .. 1 15 [. -0.6 7.9
Glyco_hydro_18 1/1 1192 1532 .. 1 391 [] 354.1 2.7e-103
FGGY_C 1/1 1245 1271 .. 139 166 .. 1.7 3.3
Phage_30_3 1/1 1246 1261 .. 38 53 .. 0.9 8.5
L51_S25_CI-B8 1/1 1247 1262 .. 9 24 .. 3.4 7.5
CAF1 1/1 1284 1298 .. 116 131 .. -0.1 5.4
AP_endonuc_2 1/1 1289 1326 .. 1 30 [. 0.6 7.5
MAM33 1/1 1305 1326 .. 204 225 .] 1.3 4.2
UPF0302 1/1 1306 1317 .. 95 109 .] 1.4 8.9
HTH_6 1/1 1316 1335 .. 1 20 [. 1.6 6.6
SPOUT_MTase 1/1 1344 1349 .. 159 164 .] 0.2 4.4
Penicil_amidase 1/1 1359 1373 .. 869 883 .] -1.6 8.2
Rsbr_N 1/1 1383 1389 .. 131 137 .] 1.0 1.8
XisI 1/1 1422 1434 .. 86 98 .. 2.9 2.3
GTPase_binding 1/1 1424 1431 .. 1 8 [. 2.0 6.4
UAF_Rrn10 1/1 1462 1478 .. 1 19 [. 3.3 2
Alignments of top-scoring domains:
Flu_B_M2: domain 1 of 1, from 49 to 88: score 4.0, E = 0.83
*->EtmKevLsdnmEvLsDHiviEGLsaeEiiKmGetvLEvEeLq<-*
E + evL +n + Hiv G + E + +G+t L +E+L+
gi|1195101 49 EEITEVLQQNSQITRLHIVSHG--SPEYLYLGNTQLSLENLH 88
DRMBL: domain 1 of 1, from 54 to 71: score 1.8, E = 5.9
*->vlTtdesesriHavpmns<-*
vl ++ ++r+H+v++ s
gi|1195101 54 VLQQNSQITRLHIVSHGS 71
EB_dh: domain 1 of 1, from 57 to 68: score -0.2, E = 8.2
*->dgsqgeRshhks<-*
++sq++R h +s
gi|1195101 57 QNSQITRLHIVS 68
DUF1343: domain 1 of 1, from 124 to 131: score 1.1, E = 3.4
*->VGLITNqT<-*
VGLI N+T
gi|1195101 124 VGLIGNPT 131
Phage_fiber_2: domain 1 of 1, from 139 to 167: score 1.3, E = 8.9
*->stsEtlAatpKAvKaayDkanekktkdee<-*
s+s + atp A aa+ ++n+ t++++
gi|1195101 139 SDSFVTTATPEARSAAFPEVNQTDTSSSK 167
DUF1610: domain 1 of 1, from 206 to 220: score 7.1, E = 0.88
*->CtsCGaelaprelgv<-*
C+sC ++l++r++ +
gi|1195101 206 CSSCARPLVDRNQIN 220
LIM: domain 1 of 1, from 206 to 216: score 2.7, E = 4.4
CS TTT--B-SSTT
*->CagCgkpIydr<-*
C++C++p dr
gi|1195101 206 CSSCARPLVDR 216
Herpes_UL55: domain 1 of 1, from 284 to 304: score 0.6, E = 6.4
*->getassslkplrlpdvtqVvp<-*
+++ ss + r+++++q v+
gi|1195101 284 NTASFSSTELQRIQYIWQRVA 304
Motilin_ghrelin: domain 1 of 1, from 285 to 297: score 3.5, E = 6
*->vpiFtysElqrlq<-*
+F + Elqr+q
gi|1195101 285 TASFSSTELQRIQ 297
Reprolysin: domain 1 of 1, from 384 to 403: score 8.4, E = 0.076
CS HHHHHHHHHHHHTT-----T
*->vAvtMAHELGHNLGmtHDdk<-*
+A t++HE GH LG+ HD++
gi|1195101 384 IAETISHEVGHTLGLKHDGT 403
Astacin: domain 1 of 1, from 387 to 398: score 3.3, E = 1.1
*->iivHElgHALGF<-*
+i+HE+gH LG+
gi|1195101 387 TISHEVGHTLGL 398
Peptidase_M66: domain 1 of 1, from 389 to 403: score 4.1, E = 0.39
*->sHEvGHnyGLgHypaGe<-*
sHEvGH +GL H +G+
gi|1195101 389 SHEVGHTLGLKH--DGT 403
Peptidase_M10: domain 1 of 1, from 390 to 400: score 6.2, E = 0.032
CS HHHHHHTTB--
RF xxxxxxxxxxx
*->HEiGHaLGLgH<-*
HE+GH LGL H
gi|1195101 390 HEVGHTLGLKH 400
Peptidase_M43: domain 1 of 1, from 390 to 400: score 8.7, E = 0.023
*->HEvGHvLGLYH<-*
HEvGH LGL H
gi|1195101 390 HEVGHTLGLKH 400
Peptidase_M54: domain 1 of 1, from 390 to 400: score 4.5, E = 0.51
*->HElGHlyGLsH<-*
HE+GH++GL H
gi|1195101 390 HEVGHTLGLKH 400
iPGM_N: domain 1 of 1, from 459 to 475: score -0.3, E = 9.1
CS T-EE-S--TT-HHHHS-
*->GwGyreetkgNAvalAk<-*
G+Gyr+++ gN +a Ak
gi|1195101 459 GFGYRTDDTGNTIATAK 475
Glyco_hydro_11: domain 1 of 1, from 492 to 514: score 4.9, E = 0.54
CS EEETTEEEEEEEGSCSEEEEEEG
*->GtagGyyYsnWtDgggtvtytng<-*
++ +++yYs++t+ g+ + ++n+
gi|1195101 492 RNTDIDYYSFFTGAGAISLTVNP 514
PPC: domain 1 of 1, from 495 to 563: score 18.0, E = 0.00018
CS -EEEEEEEESTTCE EEEE EECTSSS...S...CCEEEEEEECCCS
*->dvdvysFtvpaggt.lsis.ldggsslrslsgnGdadtlLywlldgd
d d+ysF ag +l++++ + g+ ++d l l+d+
gi|1195101 495 DIDYYSFFTGAGAIsLTVNpFTRGP---------NLDILAE-LYDSV 531
CS ESSSSTTCE-.....ECCTTEEEEEECC .-SEEEEEEEEE
pslsaydaystTrdvdnggsdelisfta...peaGtYyirVyg<-*
++l +++ e++ ++++++++aGtYy++++g
gi|1195101 532 GTLIVSSNPT-----------ESLFASIdtsVAAGTYYLKIDG 563
DUF241: domain 1 of 1, from 519 to 538: score -1.3, E = 7.6
*->dgLsgLkELYdcveelLrss<-*
+L L ELYd+v l+ ss
gi|1195101 519 PNLDILAELYDSVGTLIVSS 538
Hexokinase_1: domain 1 of 1, from 519 to 542: score -0.3, E = 8.9
CS E.EEEEEE-HHHHHHH HHHHH-T
*->pdidVVAvvNDTVGTl.macaYtd<-*
p++d+ A + D VGTl +++++t+
gi|1195101 519 PNLDILAELYDSVGTLiVSSNPTE 542
Tail_tube: domain 1 of 1, from 550 to 565: score 1.4, E = 9.2
*->MGnkiaGtAyikvdGaG<-*
++ aGt y+k+dG+G
gi|1195101 550 TS-VAAGTYYLKIDGVG 565
CelD_N: domain 1 of 1, from 554 to 568: score 3.2, E = 1.7
CS XEEEEBXBXT.T.......XXXT
*->pGtgYllvvgqgnVlsdlvekSd<-*
+Gt+Yl++ g + +k d
gi|1195101 554 AGTYYLKIDG-V-------GKGD 568
Calx-beta: domain 1 of 1, from 653 to 692: score 7.0, E = 0.35
*->YeptegtiLtFgPgedtekcinvtiiDDdvyEgdEnFfvrLs<-*
+++t+gt +tF ++ + + D ++E+dE+ + L
gi|1195101 653 FTDTTGT-ITFAANS-ATATLTIDPTADTIVEDDETVALTLN 692
Secretin_N_2: domain 1 of 1, from 685 to 704: score 2.5, E = 3.3
*->ktisamLtaPgdGryslStsta<-*
+t+++ L+ +g+G y++ t+ta
gi|1195101 685 ETVALTLN-SGTG-YTVATATA 704
DUF1628: domain 1 of 1, from 720 to 741: score 4.6, E = 0.59
*->kIvvniNGtsyeynmSgssski<-*
++++niNG+s+ey +S s ++
gi|1195101 720 RVILNINGNSNEYALSAASQNV 741
DUF1508: domain 1 of 3, from 860 to 866: score 1.5, E = 11
*->dknGqfr<-*
d+nGqfr
gi|1195101 860 DSNGQFR 866
PhnA: domain 1 of 2, from 865 to 883: score 1.6, E = 18
*->VKnIRLtvdgkadhnIDcKIdG<-*
++nI L + nI +I+G
gi|1195101 865 FRNIQL-YEN--QNNISVNING 883
DUF840: domain 1 of 1, from 1008 to 1043: score 2.2, E = 5.1
*->naYsvlnPvsnGiRkKiKslnnsvKi.YnttGEssv<-*
n +vlnP snG + i+ + n i+ n G s+
gi|1195101 1008 NDHDVLNPDSNGQFRNIQLYENQNNIsVNINGNSNE 1043
DUF1508: domain 2 of 3, from 1016 to 1022: score 1.5, E = 11
*->dknGqfr<-*
d+nGqfr
gi|1195101 1016 DSNGQFR 1022
PhnA: domain 2 of 2, from 1021 to 1039: score 1.6, E = 18
*->VKnIRLtvdgkadhnIDcKIdG<-*
++nI L + nI +I+G
gi|1195101 1021 FRNIQL-YEN--QNNISVNING 1039
DUF1508: domain 3 of 3, from 1172 to 1178: score 1.5, E = 11
*->dknGqfr<-*
d+nGqfr
gi|1195101 1172 DSNGQFR 1178
RGS-like: domain 1 of 1, from 1173 to 1186: score -0.6, E = 7.9
CS HHHHHH-HHHH....
*->qcspFqslelLLEAD<-*
++++F+++ l EAD
gi|1195101 1173 SNGQFRNIQLY-EAD 1186
Glyco_hydro_18: domain 1 of 1, from 1192 to 1532: score 354.1, E = 2.7e-103
CS CEEEEEEEGGGCGSSGGCGG..SCGGGSHTHHHHGTTESEEEEEEEE
*->krivgYftqwgnygrgrleGakflvddidpsgkaAdklTHinyaFan
+ ++gY +w + + + ++++ i+ +lTH++yaFa+
gi|1195101 1192 YILGGYIPSWRI-DSN------TNPEEIPV-----NQLTHLFYAFAD 1226
CS EETTEEE SSHCT HHHHHHHHHGHGTHTT-EEEEEEEETTSSSTST.TH
idgdgtv.tnddp.kgcfeqlkklKkqnpglKvllSiGGwtfsgdennva
+d+dg+v+ + d+ +g+ l lK+ np+l +l+SiGG+++++
gi|1195101 1227 VDPDGNVsLYADGlNGDIDLLQSLKAENPNLQILVSIGGAAEGD------ 1270
CS HHH HHTSHHHHHHHHHHHHHHHHHHTCCTTTTTTT-SEEEEEESSTTST
gfs.lasdpakRktFidSivdflrkygLgRPlgDAvfDGiDiDWEyPggk
f ++a ++a+R++F++S+++f++++g fDGiDiDWE+P +
gi|1195101 1271 -FPsAANTQASRANFAQSAIQFMKTNG---------FDGIDIDWEFPEAN 1310
CS TSSHTSTTCTCTT..TTTHHHHHHHHHHHHHHHHHHHHHHTSTSTSTCEE
prkwgsngglaspddvdedkdnytaLlkeLrealdkeakadtGrkkgylL
+ +ny++Ll +Lr+ +++++ d G+ +ylL
gi|1195101 1311 ------------------ENQNYIQLLAQLRQQINQASQND-GK--QYLL 1339
CS EEEEESSHHH..HHHHH C CHHHHHTTBSEEEEECT.SSC
taAvpagpdpdgkidgg.Y..........diakiskylDfiNvmtYDfhG
t A + +p+ ++++++Y ++ + +++d+++ s+y+DfiNvmtYD+hG
gi|1195101 1340 TTAFSGSPY---HLSASdYavnpydfspqDLKATSDYVDFINVMTYDYHG 1386
CS T.TTSSTT.BCHHSSTSSCCTTST..HHHCTHSCGG GSSHHHHHHHHHH
pqaWdnqwGvtGhnapLydgswdpevtkgthdsgrr.kfNvdyavqyyln
+W+n t+h+a+Ly + +d + + +k N+d+a+q+yl
gi|1195101 1387 --SWEN---STNHQAALYKSTNDN--------TYNAsKVNTDWAIQHYLD 1423
CS TTGS.GGGEEEEEESEEEEEEESSTSTSST CBECHTTTCCTTEEEHHHH
kgvphasKlvlGiPfYGrgwtlvngsgngl.apapgpgtkegGvlsykei
+gvp a +vlG P+YGr wt+vn++ n+++ gt+ + y e+
gi|1195101 1424 AGVP-AQDIVLGAPLYGRTWTGVNPGSNNDgLF--QSGTGSDNLPTYQEL 1470
CS HHHC TCEEEEETTTTEEEEEETCCCTEEEEE.SHHHHHHHHHHHHHT
call...gatvayddeakapyiyngstgkqfvsyddprSikaKakYvkdk
+ll+++g+ +dd ak+p iy + t ++f +y++++Si K++Yvk++
gi|1195101 1471 YNLLgtdGYESFWDDSAKVPHIYSSQT-QVFSTYENKESILGKTDYVKQQ 1519
CS TESEEEEETGGGS
gLGGvmiWsldaD<-*
g+GG+++W++ +D
gi|1195101 1520 GIGGAFFWEITGD 1532
FGGY_C: domain 1 of 1, from 1245 to 1271: score 1.7, E = 3.3
CS HHHHHHHHHT---SEEEEESGGGG-HHH
*->dvLdamqadsgiklstlrliGGgAksnv<-*
d L+ ++a+ +++l+ l++iGG+A +++
gi|1195101 1245 DLLQSLKAE-NPNLQILVSIGGAAEGDF 1271
Phage_30_3: domain 1 of 1, from 1246 to 1261: score 0.9, E = 8.5
*->FLQSlKfKnvEmQrrv<-*
+LQSlK n++ Q+ v
gi|1195101 1246 LLQSLKAENPNLQILV 1261
L51_S25_CI-B8: domain 1 of 1, from 1247 to 1262: score 3.4, E = 7.5
*->LptlkkkNPqvpilvr<-*
L +lk++NP+++ilv+
gi|1195101 1247 LQSLKAENPNLQILVS 1262
CAF1: domain 1 of 1, from 1284 to 1298: score -0.1, E = 5.4
CS EEEHHHHHHHHHCT--
RF xxxxxxxxxxxxxxxx
*->ycapsSIeFLrkqGfD<-*
+ a+s+I+F++ +GfD
gi|1195101 1284 F-AQSAIQFMKTNGFD 1298
AP_endonuc_2: domain 1 of 1, from 1289 to 1326: score 0.6, E = 7.5
CS HHHHHHHTSSEEEEEHHCHS HC HHHHHHHH
*->laaaaeaGfdgvElffddpr.as.......leelkall<-*
+++ + Gfdg+ + +++p +++ + l++l++++
gi|1195101 1289 IQFMKTNGFDGIDIDWEFPEaNEnqnyiqlLAQLRQQI 1326
MAM33: domain 1 of 1, from 1305 to 1326: score 1.3, E = 4.2
CS HHHHHHHHHHHHHHHHHHHHHH
*->aYstakEhkEYitwLekvkkFv<-*
++ +a E++ Yi +L +++ +
gi|1195101 1305 EFPEANENQNYIQLLAQLRQQI 1326
UPF0302: domain 1 of 1, from 1306 to 1317: score 1.4, E = 8.9
*->FagPPWaaqneeYLd<-*
F++ a++n +Y++
gi|1195101 1306 FPE---ANENQNYIQ 1317
HTH_6: domain 1 of 1, from 1316 to 1335: score 1.6, E = 6.6
*->mnlLekIqslyekltksEkK<-*
++lL++++++ + +++++ K
gi|1195101 1316 IQLLAQLRQQINQASQNDGK 1335
SPOUT_MTase: domain 1 of 1, from 1344 to 1349: score 0.2, E = 4.4
CS CT----
*->rghPYH<-*
+g+PYH
gi|1195101 1344 SGSPYH 1349
Penicil_amidase: domain 1 of 1, from 1359 to 1373: score -1.6, E = 8.2
CS E---SHHHHHHHEEE
*->pllftpadikahaqs<-*
p++f+p+d+ka + +
gi|1195101 1359 PYDFSPQDLKATSDY 1373
Rsbr_N: domain 1 of 1, from 1383 to 1389: score 1.0, E = 1.8
CS HHHHHH-
*->qYagSWE<-*
+Y gSWE
gi|1195101 1383 DYHGSWE 1389
XisI: domain 1 of 1, from 1422 to 1434: score 2.9, E = 2.3
*->vraGVPKeDIVLG<-*
+ aGVP +DIVLG
gi|1195101 1422 LDAGVPAQDIVLG 1434
GTPase_binding: domain 1 of 1, from 1424 to 1431: score 2.0, E = 6.4
*->AGvsAqdi<-*
AGv Aqdi
gi|1195101 1424 AGVPAQDI 1431
UAF_Rrn10: domain 1 of 1, from 1462 to 1478: score 3.3, E = 2
*->MdRNPPvrealyNlvkedG<-*
d N P++ lyNl dG
gi|1195101 1462 -D-NLPTYQELYNLLGTDG 1478
//