hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 119568294.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|119568294|gb|EAW47909.1|
Accession: [none]
Description: hCG2030359, isoform CRA_b [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
F-box F-box domain 29.3 2.4e-07 1
PsbI Photosystem II reaction centre I prot 8.7 0.098 1
FdhD-NarQ FdhD/NarQ family 6.4 0.22 1
DUF2227 Uncharacterized metal-binding protein 4.7 0.25 1
vATP-synt_E ATP synthase (E/31 kDa) subunit 4.5 0.36 1
NikR_C NikR C terminal nickel binding domain 6.4 0.42 1
SMI1_KNR4 SMI1 / KNR4 family 5.6 0.47 1
Tfb2 Transcription factor Tfb2 -0.1 0.47 1
CDC73 RNA pol II accessory factor, Cdc73 fa 3.3 0.87 1
Radical_SAM_N Radical SAM N-terminal 2.8 1 1
DUF509 Protein of unknown function (DUF509) 3.7 1.1 1
IL6 Interleukin-6/G-CSF/MGF family 2.8 1.9 1
ZipA_C ZipA, C-terminal FtsZ-binding domain 3.4 2.6 1
Baculo_helicase Baculovirus DNA helicase -1.4 3.7 1
DUF1284 Protein of unknown function (DUF1284) 1.2 4.5 1
TraI_2 Putative helicase 0.6 4.8 1
PAAD_DAPIN PAAD/DAPIN/Pyrin domain 3.2 4.8 1
Herpes_U5 Herpesvirus U5-like family 0.8 4.8 1
PP2A_B_subs_rcg Serine-threonine phosphatase 2A subun 2.6 5.3 1
SfsA Sugar fermentation stimulation protei 1.1 5.5 1
DASH_Dad1 DASH complex subunit Dad1 1.9 5.5 1
GerE Bacterial regulatory proteins, luxR f 3.0 5.6 1
Mgm101p Mitochondrial genome maintenance MGM1 -1.0 6.3 1
HN Hemagglutinin-neuraminidase -0.1 6.8 1
DUF373 Domain of unknown function (DUF373) -0.9 7.4 1
Peptidase_M74 Penicillin-insensitive murein endopep -0.2 8.4 1
DUF143 Domain of unknown function DUF143 -0.6 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PsbI 1/1 1 25 [. 1 25 [. 8.7 0.098
Baculo_helicase 1/1 5 17 .. 1271 1283 .] -1.4 3.7
F-box 1/1 7 54 .. 1 46 [] 29.3 2.4e-07
Mgm101p 1/1 34 40 .. 240 246 .] -1.0 6.3
DUF1284 1/1 45 54 .. 106 115 .] 1.2 4.5
GerE 1/1 83 91 .. 1 9 [. 3.0 5.6
TraI_2 1/1 97 131 .. 1 35 [. 0.6 4.8
ZipA_C 1/1 102 121 .. 112 131 .] 3.4 2.6
Herpes_U5 1/1 123 141 .. 531 551 .] 0.8 4.8
DUF509 1/1 161 171 .. 142 152 .] 3.7 1.1
FdhD-NarQ 1/1 217 242 .. 193 217 .. 6.4 0.22
Radical_SAM_N 1/1 227 237 .. 344 354 .] 2.8 1
SfsA 1/1 236 264 .. 196 223 .] 1.1 5.5
DUF373 1/1 240 264 .. 132 156 .. -0.9 7.4
NikR_C 1/1 240 251 .. 1 12 [. 6.4 0.42
DUF143 1/1 256 272 .. 1 17 [. -0.6 9.8
Peptidase_M74 1/1 270 278 .. 1 9 [. -0.2 8.4
CDC73 1/1 298 315 .. 297 314 .] 3.3 0.87
DUF2227 1/1 337 373 .. 155 189 .. 4.7 0.25
SMI1_KNR4 1/1 382 397 .. 127 142 .] 5.6 0.47
DASH_Dad1 1/1 388 397 .. 68 77 .] 1.9 5.5
IL6 1/1 389 403 .. 140 154 .] 2.8 1.9
Tfb2 1/1 393 407 .. 1 15 [. -0.1 0.47
vATP-synt_E 1/1 394 407 .. 196 209 .] 4.5 0.36
PAAD_DAPIN 1/1 441 456 .. 1 16 [. 3.2 4.8
HN 1/1 453 490 .. 1 40 [. -0.1 6.8
PP2A_B_subs_rcg 1/1 455 471 .. 1 18 [. 2.6 5.3
Alignments of top-scoring domains:
PsbI: domain 1 of 1, from 1 to 25: score 8.7, E = 0.098
*->mltLkifvYavvilFvsLFiFGfLs<-*
m + k+ +v+ F+sL+iF fLs
gi|1195682 1 MQVAKVDFSTVLPRFISLYIFSFLS 25
Baculo_helicase: domain 1 of 1, from 5 to 17: score -1.4, E = 3.7
*->kkDFntnvPkFKc<-*
k DF t+ P+F++
gi|1195682 5 KVDFSTVLPRFIS 17
F-box: domain 1 of 1, from 7 to 54: score 29.3, E = 2.4e-07
CS -HHHHS-HHHHHHHHTTS-HHHHHHHTTT-HHHHHHHCT- HHH HH
*->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
+ LP + l I+s+L+pkdl+++++VS+ w+ l + lw +k+
gi|1195682 7 DFSTVLPRFISLYIFSFLSPKDLCAAAQVSWPWKFLTEQDcLWMpKC 53
CS H
l<-*
gi|1195682 54 V 54
Mgm101p: domain 1 of 1, from 34 to 40: score -1.0, E = 6.3
*->qveYPYK<-*
qv+ P+K
gi|1195682 34 QVSWPWK 40
DUF1284: domain 1 of 1, from 45 to 54: score 1.2, E = 4.5
*->ggCeWlelGy<-*
++C W+++++
gi|1195682 45 QDCLWMPKCV 54
GerE: domain 1 of 1, from 83 to 91: score 3.0, E = 5.6
CS --SS-HHHH
*->ldsLspREr<-*
ld+L+pRE+
gi|1195682 83 LDWLTPREA 91
TraI_2: domain 1 of 1, from 97 to 131: score 0.6, E = 4.8
*->GltqPaavseqlLltprRqeLiekIwqrlslsrad<-*
l +P++ +e lL + r L +Iw+ +l++++
gi|1195682 97 TLNEPKTEDEELLERQREKCLRKRIWEKIALRKKE 131
ZipA_C: domain 1 of 1, from 102 to 121: score 3.4, E = 2.6
CS EETTSSB--HHHHHHHHHHH
*->LDeqRniltaQrieaYrdri<-*
++e ++l +Qr++ r+ri
gi|1195682 102 KTEDEELLERQREKCLRKRI 121
Herpes_U5: domain 1 of 1, from 123 to 141: score 0.8, E = 4.8
*->eeravrqkleslrkrllprvy<-*
e +a+r+k +l+k ++p+v
gi|1195682 123 EKIALRKK--ELFKVRPPWVS 141
DUF509: domain 1 of 1, from 161 to 171: score 3.7, E = 1.1
CS ...HH------
*->VlErvALvEav<-*
V+Erv+L Ea+
gi|1195682 161 VRERVGLHEAL 171
FdhD-NarQ: domain 1 of 1, from 217 to 242: score 6.4, E = 0.22
*->lrksfllvSGRiS.semvqKaaraGv<-*
lr f l S+Ri+ +emv+ +++aGv
gi|1195682 217 LRPHFMLISSRIPaYEMVMESVKAGV 242
Radical_SAM_N: domain 1 of 1, from 227 to 237: score 2.8, E = 1
*->kIPAyemIKfS<-*
+IPAyem+ S
gi|1195682 227 RIPAYEMVMES 237
SfsA: domain 1 of 1, from 236 to 264: score 1.1, E = 5.5
*->eAleaGVevlvyrvkvdlee.lrlvrpls<-*
e+++aGV ++vy+ +v+le l l++++
gi|1195682 236 ESVKAGVVSVVYEHSVTLESlLYLIEKAL 264
DUF373: domain 1 of 1, from 240 to 264: score -0.9, E = 7.4
*->eavkrVIVrQsegiEStYYlIakyL<-*
++v +V+ ++s ++ES YlI k+L
gi|1195682 240 AGVVSVVYEHSVTLESLLYLIEKAL 264
NikR_C: domain 1 of 1, from 240 to 251: score 6.4, E = 0.42
CS EEEEEEEEETTS
*->vGtitlVYDHhk<-*
+G++++VY H++
gi|1195682 240 AGVVSVVYEHSV 251
DUF143: domain 1 of 1, from 256 to 272: score -0.6, E = 9.8
*->llelivealdDkKAeDI<-*
ll li +ald KA+ I
gi|1195682 256 LLYLIEKALDGQKAQSI 272
Peptidase_M74: domain 1 of 1, from 270 to 278: score -0.2, E = 8.4
*->qSIGsYanG<-*
qSIG ++ G
gi|1195682 270 QSIGIFSDG 278
CDC73: domain 1 of 1, from 298 to 315: score 3.3, E = 0.87
*->ravvsqfWetLEkfvrkr<-*
r+ v+ fWe+L +v+
gi|1195682 298 RPEVRDFWEKLGSYVATE 315
DUF2227: domain 1 of 1, from 337 to 373: score 4.7, E = 0.25
*->lqshpeellafllA..GLelGawlHsIaDwvvsawkr<-*
l++ ++++++f+ A++G +G+ H+++Dw++s w +
gi|1195682 337 LSQLSQLTGTFFTAptGIATGSYQHILSDWLGSQWGK 373
SMI1_KNR4: domain 1 of 1, from 382 to 397: score 5.6, E = 0.47
*->deivvvAdSFeefLek<-*
+++ + ++SF++fLe+
gi|1195682 382 ESKLQTWSSFTDFLEE 397
DASH_Dad1: domain 1 of 1, from 388 to 397: score 1.9, E = 5.5
*->WkhFynglne<-*
W+ F ++l+e
gi|1195682 388 WSSFTDFLEE 397
IL6: domain 1 of 1, from 389 to 403: score 2.8, E = 1.9
CS HHHHHHHHHHHHHHH
*->rsLeeFLefslRAlR<-*
+s+ +FLe +l +R
gi|1195682 389 SSFTDFLEETLKTVR 403
Tfb2: domain 1 of 1, from 393 to 407: score -0.1, E = 0.47
*->dFLetipspvlqRLY<-*
dFLe+ + v+ LY
gi|1195682 393 DFLEETLKTVRKQLY 407
vATP-synt_E: domain 1 of 1, from 394 to 407: score 4.5, E = 0.36
*->vfeqlLpeIrkaLF<-*
+ e+ L+++rk+L+
gi|1195682 394 FLEETLKTVRKQLY 407
PAAD_DAPIN: domain 1 of 1, from 441 to 456: score 3.2, E = 4.8
CS HHHHHHHHHHHS-HHH
*->krilLlkyLEeLndee<-*
+ + L ++L+eL++e+
gi|1195682 441 TAQALADGLMELSKED 456
HN: domain 1 of 1, from 453 to 490: score -0.1, E = 6.8
*->fykdnprlnstrvvlnnertnklierpliLltvlliLsls<-*
+ d+ ++++ +v ++n ++n ++ + +Ll+ l+ Lsls
gi|1195682 453 SKEDSVSVSLKKVNYENQHLN--KFCLQLLLIFLTSLSLS 490
PP2A_B_subs_rcg: domain 1 of 1, from 455 to 471: score 2.6, E = 5.3
*->ektvsasprkvtRFanaH<-*
e vs+s++kv ++n H
gi|1195682 455 EDSVSVSLKKV-NYENQH 471
//