hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 119608797.fa
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Query sequence: gi|119608797|gb|EAW88391.1|
Accession: [none]
Description: nasal embryonic LHRH factor, isoform CRA_b [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
NUP Purine nucleoside permease (NUP) 1.5 2 1
Orthopox_B11R Orthopoxvirus B11R protein 3.4 2.9 1
AMP_N Aminopeptidase P, N-terminal domain 1.9 4.4 1
TIR TIR domain 0.9 5.4 1
IMPDH IMP dehydrogenase / GMP reductase dom 0.6 6 1
Orthopox_N1 Orthopoxvirus N1 protein 0.7 6.4 1
IFRD Interferon-related developmental regu -0.2 6.5 1
c-SKI_SMAD_bind c-SKI Smad4 binding domain 1.4 6.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AMP_N 1/1 7 18 .. 1 12 [. 1.9 4.4
NUP 1/1 77 85 .. 1 9 [. 1.5 2
Orthopox_B11R 1/1 111 126 .. 1 16 [. 3.4 2.9
c-SKI_SMAD_bind 1/1 113 129 .. 82 98 .] 1.4 6.8
IFRD 1/1 114 125 .. 354 365 .] -0.2 6.5
TIR 1/1 165 180 .. 131 150 .] 0.9 5.4
Orthopox_N1 1/1 234 247 .. 100 113 .] 0.7 6.4
IMPDH 1/1 255 263 .] 1 9 [. 0.6 6
Alignments of top-scoring domains:
AMP_N: domain 1 of 1, from 7 to 18: score 1.9, E = 4.4
*->ipadefaaRRkr<-*
++a+ fa+RR+r
gi|1196087 7 VKAQTFAERRER 18
NUP: domain 1 of 1, from 77 to 85: score 1.5, E = 2
*->iqpKVmvIt<-*
++pKVm+I+
gi|1196087 77 VPPKVMLIS 85
Orthopox_B11R: domain 1 of 1, from 111 to 126: score 3.4, E = 2.9
*->DtdvanvEDimnEiDR<-*
D + a EDi+ Ei+R
gi|1196087 111 DHEHATFEDILEEIER 126
c-SKI_SMAD_bind: domain 1 of 1, from 113 to 129: score 1.4, E = 6.8
CS CHHHHHHHHHHHHCC--
*->eeakLeqvLeevkekFd<-*
e+a+ e +Lee++ k +
gi|1196087 113 EHATFEDILEEIERKLN 129
IFRD: domain 1 of 1, from 114 to 125: score -0.2, E = 6.5
*->RstFRDVlrfvE<-*
++tF D+l+ +E
gi|1196087 114 HATFEDILEEIE 125
TIR: domain 1 of 1, from 165 to 180: score 0.9, E = 5.4
CS SG.....GGCCHHHHHHHHH
*->dktersqsdrikfWkkalya<-*
+k+e d+i+fWk++
gi|1196087 165 EKEE----DMIHFWKRLSRL 180
Orthopox_N1: domain 1 of 1, from 234 to 247: score 0.7, E = 6.4
*->rmiekyfddlmidl<-*
+mie+yfd + l
gi|1196087 234 QMIETYFDFRLYRL 247
IMPDH: domain 1 of 1, from 255 to 263: score 0.6, E = 6
CS EB-GGGGEE
RF xxxxxxxxx
*->egLTFDDVL<-*
+ L+FDDVL
gi|1196087 255 KLLDFDDVL 263
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