hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 11967898.fa
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Query sequence: gi|11967898|emb|CAC19493.1|
Accession: [none]
Description: nematicidal protein 2 [Xenorhabdus bovienii]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RHS_repeat RHS Repeat 72.7 8.4e-20 5
Glyco_hydro_2 Glycosyl hydrolases family 2, immunog 4.7 0.24 1
FTP Fungalysin/Thermolysin Propeptide Mot 7.3 0.31 1
peroxidase Peroxidase 4.9 0.68 1
NTNH_C Nontoxic nonhaemagglutinin C-terminal 4.7 0.83 1
DUF2084 Uncharacterized protein conserved in 4.2 0.97 1
RMMBL RNA-metabolising metallo-beta-lactama 5.3 1.4 1
Nepo_coat Nepovirus coat protein, central domai 3.1 1.5 1
Maf1 Maf1 regulator 2.7 1.8 1
DUF6 Integral membrane protein DUF6 4.7 1.8 1
DUF943 Enterobacterial putative membrane pro 2.9 2.1 1
Pam16 Pam16 2.4 3.2 1
DUF2170 Uncharacterized protein conserved in 2.5 3.3 1
Exo70 Exo70 exocyst complex subunit 1.3 3.5 1
DUF975 Protein of unknown function (DUF975) 1.2 3.6 1
Pico_P2A Picornavirus core protein 2A 2.1 4 1
DUF1049 Protein of unknown function (DUF1049) 3.1 4.2 1
EPTP EPTP domain 4.1 4.5 1
TrbL TrbL/VirB6 plasmid conjugal transfer 1.6 4.6 1
PAN_3 PAN-like domain 3.0 4.6 1
Cuticle_1 Crustacean cuticle protein repeat 2.1 5.4 1
Nairo_nucleo Nucleocapsid N protein -1.1 5.6 1
PI3Ka Phosphoinositide 3-kinase family, acc 1.1 5.6 1
Fusion_gly_K Cell fusion glycoprotein K 0.5 5.9 1
Vac_Fusion Chordopoxvirus fusion protein 0.0 6.3 1
DUF662 Family of unknown function (DUF662) 0.9 6.3 1
FA_desaturase Fatty acid desaturase 1.3 6.4 1
YHS YHS domain 3.7 6.4 1
DUF2535 Protein of unknown function (DUF2535) -0.2 6.5 1
Rotamase PPIC-type PPIASE domain 1.5 6.8 1
AzlC AzlC protein 1.7 7 1
Mid2 Mid2 like cell wall stress sensor 1.3 7 1
SdrG_C_C C-terminus of bacterial fibrinogen-bi 1.6 7.3 1
MORN_2 MORN repeat variant 3.8 7.5 4
Ribosomal_L22 Ribosomal protein L22p/L17e 1.5 7.7 1
zf-DBF DBF zinc finger 2.5 7.7 1
Orbi_NS1 Orbivirus non-structural protein NS1, -0.4 7.8 1
Strabismus Strabismus protein -1.5 8 1
UTRA UTRA domain 1.0 8.5 1
HrpJ Hypersensitivity response secretion p 0.3 9 1
AFOR_N Aldehyde ferredoxin oxidoreductase, N -0.3 9 1
Curlin_rpt Curlin associated repeat 2.0 9.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TrbL 1/1 7 21 .. 256 285 .] 1.6 4.6
DUF1049 1/1 90 110 .. 60 80 .] 3.1 4.2
MORN_2 1/4 116 137 .. 1 22 [] 0.9 51
Nairo_nucleo 1/1 193 206 .. 431 444 .] -1.1 5.6
MORN_2 2/4 257 267 .. 12 22 .] 0.1 81
SdrG_C_C 1/1 294 322 .. 145 182 .] 1.6 7.3
FTP 1/1 337 363 .. 1 26 [. 7.3 0.31
PI3Ka 1/1 344 363 .. 175 197 .. 1.1 5.6
Pico_P2A 1/1 362 369 .. 1 8 [. 2.1 4
DUF975 1/1 376 392 .. 315 331 .] 1.2 3.6
MORN_2 3/4 418 435 .. 1 18 [. 1.8 27
YHS 1/1 486 497 .. 34 45 .] 3.7 6.4
Pam16 1/1 533 553 .. 118 138 .] 2.4 3.2
Mid2 1/1 580 591 .. 151 162 .] 1.3 7
Strabismus 1/1 584 592 .. 1 9 [. -1.5 8
peroxidase 1/1 596 612 .. 334 364 .] 4.9 0.68
RHS_repeat 1/5 611 660 .. 1 44 [] 14.1 0.0038
Nepo_coat 1/1 630 646 .. 1 18 [. 3.1 1.5
Vac_Fusion 1/1 766 770 .. 53 57 .] 0.0 6.3
Fusion_gly_K 1/1 781 789 .. 362 370 .] 0.5 5.9
DUF2084 1/1 789 805 .. 25 41 .. 4.2 0.97
RHS_repeat 2/5 802 839 .. 1 44 [] 18.7 0.00019
Maf1 1/1 805 825 .. 143 164 .. 2.7 1.8
EPTP 1/1 812 825 .. 33 53 .] 4.1 4.5
PAN_3 1/1 816 844 .. 46 74 .] 3.0 4.6
RHS_repeat 3/5 868 892 .. 1 27 [. 5.0 1.5
Cuticle_1 1/1 896 909 .. 31 44 .] 2.1 5.4
DUF943 1/1 909 933 .. 157 180 .] 2.9 2.1
Rotamase 1/1 910 929 .. 74 93 .. 1.5 6.8
HrpJ 1/1 917 931 .. 88 102 .. 0.3 9
NTNH_C 1/1 963 978 .. 157 172 .] 4.7 0.83
RHS_repeat 4/5 996 1033 .. 1 40 [. 8.6 0.14
MORN_2 4/4 998 1018 .. 1 22 [] 1.0 48
Glyco_hydro_2 1/1 1003 1021 .. 1 19 [. 4.7 0.24
zf-DBF 1/1 1016 1025 .. 15 24 .. 2.5 7.7
UTRA 1/1 1173 1196 .. 118 141 .] 1.0 8.5
RHS_repeat 5/5 1176 1210 .. 1 44 [] 26.3 1.3e-06
Orbi_NS1 1/1 1180 1195 .. 540 555 .] -0.4 7.8
DUF662 1/1 1260 1293 .. 1 35 [. 0.9 6.3
FA_desaturase 1/1 1309 1410 .. 71 168 .. 1.3 6.4
AzlC 1/1 1370 1388 .. 125 143 .] 1.7 7
DUF6 1/1 1371 1391 .. 108 128 .] 4.7 1.8
DUF2170 1/1 1416 1430 .. 98 112 .. 2.5 3.3
Ribosomal_L22 1/1 1423 1432 .. 127 136 .] 1.5 7.7
RMMBL 1/1 1530 1540 .. 35 45 .] 5.3 1.4
AFOR_N 1/1 1532 1539 .. 225 232 .] -0.3 9
DUF2535 1/1 1543 1553 .. 73 83 .] -0.2 6.5
Exo70 1/1 1548 1572 .. 397 422 .] 1.3 3.5
Curlin_rpt 1/1 1571 1583 .. 2 14 .. 2.0 9.2
Alignments of top-scoring domains:
TrbL: domain 1 of 1, from 7 to 21: score 1.6, E = 4.6
*->llkqipgiAqglvgavvtlggavaaalaGG<-*
+++q++++ +a++GG
gi|1196789 7 FFTQANNFT---------------SAVSGG 21
DUF1049: domain 1 of 1, from 90 to 110: score 3.1, E = 4.2
*->lalrrLnKklkkqeqqlaelt<-*
++ + K +k q+++l++l+
gi|1196789 90 YKVIETDKTVKLQQKKLDNLR 110
MORN_2: domain 1 of 4, from 116 to 137: score 0.9, E = 51
*->keGeekfyyenGklkeeieykn<-*
ke +++ + +G ++ + ++n
gi|1196789 116 KENCYRIIHKSGDIEVLTGFNN 137
Nairo_nucleo: domain 1 of 1, from 193 to 206: score -1.1, E = 5.6
*->stIvkLfeiqkiGy<-*
+tI Lf qk Gy
gi|1196789 193 KTILTLFPGQKEGY 206
MORN_2: domain 2 of 4, from 257 to 267: score 0.1, E = 81
*->Gklkeeieykn<-*
G lke+++y n
gi|1196789 257 GGLKETVNYSN 267
SdrG_C_C: domain 1 of 1, from 294 to 322: score 1.6, E = 7.3
*->stdnlnlrqgttLsgynnnnqyygyysyyrgvtlgwdN<-*
+ + + ++ +++s+++ n+ +g +s+ w+N
gi|1196789 294 GAGQPAIQ--AEYSYTSHNY--VGGGSNG-----IWNN 322
FTP: domain 1 of 1, from 337 to 363: score 7.3, E = 0.31
*->dlkvvktttdpnGk.thvRfqQtynGi<-*
+ + ++++d+ G++++vR ++tyn++
gi|1196789 337 GSTESRRYKDKEGHdQIVRIERTYNNY 363
PI3Ka: domain 1 of 1, from 344 to 363: score 1.1, E = 5.6
CS .....T-TTTH.HHHHHHHHHHH
*->YkDdeghdkdvIserFgvllEsy<-*
YkD eghd++v r+ +++ y
gi|1196789 344 YKDKEGHDQIV---RIERTYNNY 363
Pico_P2A: domain 1 of 1, from 362 to 369: score 2.1, E = 4
*->NyHLATpe<-*
NyHL T e
gi|1196789 362 NYHLLTSE 369
DUF975: domain 1 of 1, from 376 to 392: score 1.2, E = 3.6
*->YieTtkaiFYenlkkrk<-*
Yi+Tt ++Y ++ ++
gi|1196789 376 YIQTTETAYYAIIGHNF 392
MORN_2: domain 3 of 4, from 418 to 435: score 1.8, E = 27
*->keGeekfyyenGklkeei<-*
e +e++++e+G++++++
gi|1196789 418 SEITETTFDESGNPLTKV 435
YHS: domain 1 of 1, from 486 to 497: score 3.7, E = 6.4
CS HHTSGGGTTT--
*->FeadPekYagak<-*
F++dPek+++ +
gi|1196789 486 FKDDPEKFIQYR 497
Pam16: domain 1 of 1, from 533 to 553: score 2.4, E = 3.2
*->deELGkirekeekkKaedAkT<-*
+ ELG+ + e K+e+ kT
gi|1196789 533 KSELGRLLKQTECTKGENGKT 553
Mid2: domain 1 of 1, from 580 to 591: score 1.3, E = 7
*->plsvgatnsdar<-*
+++++++++++r
gi|1196789 580 NFTIHRSQVRSR 591
Strabismus: domain 1 of 1, from 584 to 592: score -1.5, E = 8
*->HrerlReRH<-*
Hr + R+R+
gi|1196789 584 HRSQVRSRY 592
peroxidase: domain 1 of 1, from 596 to 612: score 4.9, E = 0.68
CS HHHHHHHTTTCHHHHHHHHHHHHHTHHHHHH
*->LftAEVYAddadprTraiVAWKVMLdrfann<-*
Lf+ d +T++iV ++++ +
gi|1196789 596 LFS--------DTDTKDIV------TQMSYD 612
RHS_repeat: domain 1 of 5, from 611 to 660: score 14.1, E = 0.0038
*->YDanGrLtavtdpsgpvgq.tYrYD.aagr.........ltaltltt
YD +GrL++ t +sg+ +t++YD ++++ +++++++ ++++
gi|1196789 611 YDKLGRLLTRTLNSGTPYAnTLTYDyELNNlqddnrppfVITT---- 653
stdasGtt<-*
td +G
gi|1196789 654 -TDVNGNQ 660
Nepo_coat: domain 1 of 1, from 630 to 646: score 3.1, E = 1.5
CS -SEESS---.-S-EEEEE
*->PtltyPiklGgdlslldl<-*
+tlty+ +l ++l ++++
gi|1196789 630 NTLTYDYEL-NNLQDDNR 646
Vac_Fusion: domain 1 of 1, from 766 to 770: score 0.0, E = 6.3
*->DvQTG<-*
+vQTG
gi|1196789 766 NVQTG 770
Fusion_gly_K: domain 1 of 1, from 781 to 789: score 0.5, E = 5.9
*->qeIQirLFG<-*
q IQi+LF+
gi|1196789 781 QPIQITLFD 789
DUF2084: domain 1 of 1, from 789 to 805: score 4.2, E = 0.97
*->denGkitevtCvTReGw<-*
de+G + + +++TR+Gw
gi|1196789 789 DEAGHLQSCHTLTRDGW 805
RHS_repeat: domain 2 of 5, from 802 to 839: score 18.7, E = 0.00019
*->YDanGrLtavtdpsgpvgqtYrYDaagrltaltlttstdasGtt<-*
D +r+ td+ g+ + Y+YD+ +r++++ t ++Gt+
gi|1196789 802 RDGWDRVRKETDAIGQCT-IYQYDNYNRVIQI-----TLPDGTI 839
Maf1: domain 1 of 1, from 805 to 825: score 2.7, E = 1.8
*->WeiIdehisAlkdCeIYsYnmP<-*
W+ ++++ +A++ C IY+Y+ +
gi|1196789 805 WDRVRKETDAIGQCTIYQYD-N 825
EPTP: domain 1 of 1, from 812 to 825: score 4.1, E = 4.5
*->asffgAGdsqiyeHliykWdg<-*
++ +g ++ iy++d+
gi|1196789 812 TDAIG--QCT-----IYQYDN 825
PAN_3: domain 1 of 1, from 816 to 844: score 3.0, E = 4.6
*->snCqlfsygnvstvkklesssgskvAfKv<-*
++C++++y+n + v +++ ++g++v K
gi|1196789 816 GQCTIYQYDNYNRVIQITLPDGTIVNRKY 844
RHS_repeat: domain 3 of 5, from 868 to 892: score 5.0, E = 1.5
*->YDanGrLtavtdpsgpvgqtYrYDaag<-*
+D + rLt ++ ++g+v+ Y+Y a +
gi|1196789 868 FDGLSRLT-QSQDGGRVW-AYTYSAGN 892
Cuticle_1: domain 1 of 1, from 896 to 909: score 2.1, E = 5.4
*->PSGiVtsdGkNvQl<-*
PS ++t dG+++ +
gi|1196789 896 PSTVITPDGQFIHY 909
DUF943: domain 1 of 1, from 909 to 933: score 2.9, E = 2.1
*->YqlpPkkdddkL.vengkItKmked<-*
Yq++P dd L+v +++It +
gi|1196789 909 YQYQPELDDAVLqVASNEITQQFSY 933
Rotamase: domain 1 of 1, from 910 to 929: score 1.5, E = 6.8
CS S-CHHHHHHTTTTSSS-EEE
*->eldpaFedAafkLkvGelSq<-*
+++p+++dA+ + + +e++q
gi|1196789 910 QYQPELDDAVLQVASNEITQ 929
HrpJ: domain 1 of 1, from 917 to 931: score 0.3, E = 9
*->dayLegasgepsrqf<-*
da+L+ as+e+++qf
gi|1196789 917 DAVLQVASNEITQQF 931
NTNH_C: domain 1 of 1, from 963 to 978: score 4.7, E = 0.83
*->nnnsniPKkayLWiLK<-*
+n +++ K +yLW L+
gi|1196789 963 ENINDMKKMSYLWTLR 978
RHS_repeat: domain 4 of 5, from 996 to 1033: score 8.6, E = 0.14
*->YDanGrLtavtdpsgpvgqtYrYDaagr.....ltaltlttstda<-
D +Gr+t+++d+s ++ + YD+++r+ ++++t+l ++
gi|1196789 996 RDTHGRVTQIKDSSIKTT--LNYDDLNRhigsqVTDL-----ATG 1033
*
gi|1196789 - -
MORN_2: domain 4 of 4, from 998 to 1018: score 1.0, E = 48
*->keGeekfyyenGklkeeieykn<-*
++G++++ ++ +k++++y++
gi|1196789 998 THGRVTQIKDS-SIKTTLNYDD 1018
Glyco_hydro_2: domain 1 of 1, from 1003 to 1021: score 4.7, E = 0.24
CS CEEEEEEEEEEBTT.SSEE
*->thIdDitVtTdfddddykd<-*
t+I+D ++T++++dd+++
gi|1196789 1003 TQIKDSSIKTTLNYDDLNR 1021
zf-DBF: domain 1 of 1, from 1016 to 1025: score 2.5, E = 7.7
*->fddLeeHlvs<-*
+ddL++H++s
gi|1196789 1016 YDDLNRHIGS 1025
UTRA: domain 1 of 1, from 1173 to 1196: score 1.0, E = 8.5
*->rvtydadGrpvEysrsyyrgDryr<-*
r+ yd Gr++ + ++ +++ ++
gi|1196789 1173 RLKYDKAGRVINITDNHGNTENFT 1196
RHS_repeat: domain 5 of 5, from 1176 to 1210: score 26.3, E = 1.3e-06
*->YDanGrLtavtdpsgpvgqtYrYDaagrltaltlttstdasGtt<-*
YD +Gr++ +td+ g++ ++YD +gr l +++G +
gi|1196789 1176 YDKAGRVINITDNHGNTE-NFTYDTLGR---L-----QNGQGSV 1210
Orbi_NS1: domain 1 of 1, from 1180 to 1195: score -0.4, E = 7.8
*->grVsniaeamgdmwin<-*
grV+ni + +g++ +
gi|1196789 1180 GRVINITDNHGNTENF 1195
DUF662: domain 1 of 1, from 1260 to 1293: score 0.9, E = 6.3
*->qirrlkvsgvgSmsgspmmdeeeagEElsrsALSa<-*
q+r+ kv ++g+ s + + ++ + ls+ A Sa
gi|1196789 1260 QQRASKVLLTGTDSQQSVILTSDK-QNLSQEAYSA 1293
FA_desaturase: domain 1 of 1, from 1309 to 1410: score 1.3, E = 6.4
*->tntpgkDPdsart..lrrllryalrrrllglgrllyrfllglllgll
+n++ +DP s t+ ++ y++ ++++ l +f+ g + ++
gi|1196789 1309 YNGERADPVSGVThlGNGYRSYDPTLMRFHTPDSLSPFGAGGINPYS 1355
lfll.frr.rlrkrrrrvllllllaallalaglllglgglgalllflvpl
+ l + + + + + ++++ + + +a ++l+ ++gg++++++ ++++
gi|1196789 1356 YCLGdPINrSDPSGHLSWQAWTGIGMGIAGLLLTIATGGMAIAAAGGIAA 1405
llalt<-*
++a+t
gi|1196789 1406 AIAST 1410
AzlC: domain 1 of 1, from 1370 to 1388: score 1.7, E = 7
*->YlsWvlgtllGallGslip<-*
+lsW+++t +G ++ l+
gi|1196789 1370 HLSWQAWTGIGMGIAGLLL 1388
DUF6: domain 1 of 1, from 1371 to 1391: score 4.7, E = 1.8
*->ltlkqllGivlillGvllisl<-*
l++ + Gi+++++G+ll++
gi|1196789 1371 LSWQAWTGIGMGIAGLLLTIA 1391
DUF2170: domain 1 of 1, from 1416 to 1430: score 2.5, E = 3.3
*->lFGALSasSsLediv<-*
+FGALS++S +++iv
gi|1196789 1416 AFGALSVTSDITSIV 1430
Ribosomal_L22: domain 1 of 1, from 1423 to 1432: score 1.5, E = 7.7
CS EEEEEEEE--
*->TCHITivvse<-*
T++IT +vs
gi|1196789 1423 TSDITSIVSG 1432
RMMBL: domain 1 of 1, from 1530 to 1540: score 5.3, E = 1.4
*->kkvilVHGEpr<-*
++ ilVHG+++
gi|1196789 1530 EQAILVHGDKD 1540
AFOR_N: domain 1 of 1, from 1532 to 1539: score -0.3, E = 9
CS EEEEE---
*->AIaVeGtK<-*
AI V+G+K
gi|1196789 1532 AILVHGDK 1539
DUF2535: domain 1 of 1, from 1543 to 1553: score -0.2, E = 6.5
*->iYktetLKhNA<-*
+Y+te+ KhN
gi|1196789 1543 LYHTEGNKHNG 1553
Exo70: domain 1 of 1, from 1548 to 1572: score 1.3, E = 3.5
*->sgrtknkqsKyiKYtpedlenmLseL<-*
++++ +k + y + tpe+l +L +
gi|1196789 1548 GNKHNGK-GPYTRHTPEQLVDYLKDN 1572
Curlin_rpt: domain 1 of 1, from 1571 to 1583: score 2.0, E = 9.2
*->ddNsvditQsGda<-*
d+N vd+tQ Gd+
gi|1196789 1571 DNNIVDLTQGGDK 1583
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