hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 12057035.fa
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Query sequence: gi|12057035|emb|CAC19891.1|
Accession: [none]
Description: toxin B [Clostridium difficile]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CW_binding_1 Putative cell wall binding repeat 156.4 1.3e-48 17
Gly_transf_sug Glycosyltransferase sugar-binding reg 31.0 1e-08 1
Ham1p_like Ham1 family 9.1 0.026 1
Pox_G5 Poxvirus G5 protein 2.2 0.28 1
DUF1828 Domain of unknown function DUF1828 6.8 0.42 1
DUF1779 Protein of unknown function (DUF1779) 1.9 0.56 1
UPF0254 Uncharacterised protein family (UPF02 4.1 0.79 1
Sulfotransfer_1 Sulfotransferase domain 4.1 0.87 1
FliM Flagellar motor switch protein FliM 3.7 0.98 1
Adeno_knob Adenoviral fibre protein (knob domain -1.2 1 1
DUF533 Protein of unknown function (DUF533) 3.5 1.2 1
Clp_N Clp amino terminal domain 5.1 1.3 1
RTC RNA 3'-terminal phosphate cyclase 3.1 1.3 1
AAR2 AAR2 protein 3.0 1.4 1
RRN3 RNA polymerase I specific transcripti 1.4 1.8 1
Mo25 Mo25-like 1.7 1.9 1
Vps52 Vps52 / Sac2 family 0.4 2 1
DUF553 Transglutaminase-like domain 2.4 2.1 1
Caps_synth Capsular polysaccharide synthesis pro 2.6 2.3 1
DUF2466 Protein of unknown function (DUF2466) 2.9 2.4 1
Porin_2 Porin subfamily 1.7 2.5 1
CheR CheR methyltransferase, SAM binding d 1.7 2.8 1
RE_AlwI AlwI restriction endonuclease 1.1 2.9 1
Thr_dehydrat_C C-terminal regulatory domain of Threo 3.0 2.9 1
TGT Queuine tRNA-ribosyltransferase 2.1 3 1
Phage_Cox Regulatory phage protein cox 2.7 3.1 1
GAL11 Transcription regulatory protein GAL1 1.9 3.2 1
Spc97_Spc98 Spc97 / Spc98 family 0.3 3.2 1
Citrus_P18 Citrus tristeza virus P18 protein 1.4 3.2 1
DUF1803 Domain of unknown function (DUF1803) 2.6 3.4 1
DUF1805 Domain of unknown function (DUF1805) 2.8 3.6 1
SelB-wing_2 Elongation factor SelB, winged helix 4.3 3.7 1
PIN PIN domain 1.5 4.1 2
Aldolase KDPG and KHG aldolase 1.4 4.2 1
DUF1992 Domain of unknown function (DUF1992) 3.5 4.2 1
Enterotoxin_a Heat-labile enterotoxin alpha chain 1.0 4.4 1
DUF976 Caenorhabditis elegans protein of unk 1.6 4.4 1
DUF965 Bacterial protein of unknown function 1.6 4.5 1
Nrf1_DNA-bind NLS-binding and DNA-binding and dimer 0.6 4.6 1
Ins_allergen_rp Insect allergen related repeat 3.2 4.7 1
SCPU Spore Coat Protein U domain 2.9 4.7 1
DUF2102 Uncharacterized protein conserved in 2.2 4.8 1
Pec_lyase_C Pectate lyase 2.4 4.9 1
Mfp-3 Foot protein 3 2.3 5.1 1
DUF1679 Protein of unknown function (DUF1679) 0.8 5.2 1
Ribosomal_L22e Ribosomal L22e protein family 1.3 5.4 1
Prenylcys_lyase Prenylcysteine lyase -0.4 5.5 1
Baculo_Y142 Baculovirus Y142 protein -0.8 5.8 1
SEA SEA domain 2.1 5.8 1
US2 US2 family 1.4 5.8 1
Chaperone_III Type III secretion chaperone domain 1.3 5.8 1
DUF2603 Protein of unknown function (DUF2603) 1.0 5.8 1
DUF267 Caenorhabditis protein of unknown fun 0.4 5.9 1
SpoU_sub_bind RNA 2'-O ribose methyltransferase sub 2.8 6.1 1
Peptidase_C1_2 Peptidase C1-like family -0.8 6.2 1
S4 S4 domain 3.5 6.3 1
DUF270 Protein of unknown function, DUF270 -3.7 6.5 1
Bmp Basic membrane protein 0.4 6.8 1
Lact_bio_phlase Lacto-N-biose phosphorylase -1.0 6.8 1
H_PPase Inorganic H+ pyrophosphatase -1.4 7.3 1
PalH PalH/RIM21 -0.3 7.3 1
MutS_IV MutS family domain IV 2.1 7.8 1
Asn_synthase Asparagine synthase 0.8 7.8 1
Bin3 Bicoid-interacting protein 3 (Bin3) 0.9 7.9 1
Ssl1 Ssl1-like -2.6 8 1
Utp13 Utp13 specific WD40 associated domain 0.6 9 1
RGP Reversibly glycosylated polypeptide -1.5 9 1
Branch_AA_trans Branched-chain amino acid transport p -0.6 9.2 1
Rhabdo_ncap_2 Rhabdovirus nucleoprotein -0.4 9.2 1
VTC VTC domain -0.2 9.2 1
FMN_bind_2 Putative FMN-binding domain 0.4 9.3 1
Pox_A14 Poxvirus virion envelope protein A14 1.9 9.4 1
Peptidase_M4_C Thermolysin metallopeptidase, alpha-h 0.2 9.4 1
Pox_D2 Pox virus D2 protein -0.4 9.4 1
Cyclin Cyclin -0.1 9.5 1
UPF0560 Uncharacterised protein family UPF056 -2.1 9.5 1
IpaD Invasion plasmid antigen IpaD -1.8 9.6 1
MED6 MED6 mediator sub complex component 0.6 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
RTC 1/1 9 21 .. 221 233 .] 3.1 1.3
SelB-wing_2 1/1 27 35 .. 1 9 [. 4.3 3.7
Thr_dehydrat_C 1/1 33 47 .. 79 93 .] 3.0 2.9
Nrf1_DNA-bind 1/1 53 78 .. 189 214 .] 0.6 4.6
UPF0254 1/1 65 80 .. 151 166 .] 4.1 0.79
Ham1p_like 1/1 68 79 .. 192 203 .] 9.1 0.026
Mo25 1/1 76 88 .. 377 389 .] 1.7 1.9
Prenylcys_lyase 1/1 130 142 .. 1 13 [. -0.4 5.5
Peptidase_C1_2 1/1 148 162 .. 1 15 [. -0.8 6.2
CheR 1/1 167 173 .. 1 7 [. 1.7 2.8
DUF965 1/1 199 211 .. 67 79 .] 1.6 4.5
DUF1679 1/1 201 213 .. 414 426 .] 0.8 5.2
SEA 1/1 205 241 .. 86 121 .] 2.1 5.8
MutS_IV 1/1 213 234 .. 1 22 [. 2.1 7.8
Spc97_Spc98 1/1 215 237 .. 635 657 .] 0.3 3.2
Gly_transf_sug 1/1 234 291 .. 1 67 [. 31.0 1e-08
FMN_bind_2 1/1 255 290 .. 145 182 .] 0.4 9.3
Rhabdo_ncap_2 1/1 267 275 .. 351 359 .] -0.4 9.2
Caps_synth 1/1 269 287 .. 124 142 .. 2.6 2.3
Aldolase 1/1 274 295 .. 136 159 .. 1.4 4.2
Baculo_Y142 1/1 325 343 .. 30 48 .. -0.8 5.8
Utp13 1/1 331 347 .. 124 140 .. 0.6 9
Pec_lyase_C 1/1 416 425 .. 241 250 .] 2.4 4.9
DUF2603 1/1 429 437 .. 1 9 [. 1.0 5.8
DUF270 1/1 454 458 .. 1 5 [. -3.7 6.5
Bin3 1/1 485 503 .. 85 104 .. 0.9 7.9
GAL11 1/1 505 531 .. 1 28 [. 1.9 3.2
TGT 1/1 518 529 .. 235 246 .] 2.1 3
Pox_D2 1/1 609 624 .. 142 160 .] -0.4 9.4
Asn_synthase 1/1 636 646 .. 317 327 .] 0.8 7.8
Clp_N 1/1 665 681 .. 37 53 .] 5.1 1.3
Enterotoxin_a 1/1 737 755 .. 247 265 .] 1.0 4.4
PalH 1/1 773 786 .. 417 431 .] -0.3 7.3
VTC 1/1 782 803 .. 1 22 [. -0.2 9.2
Pox_A14 1/1 810 817 .. 88 95 .] 1.9 9.4
DUF1992 1/1 835 845 .. 1 11 [. 3.5 4.2
Phage_Cox 1/1 852 870 .. 1 20 [. 2.7 3.1
DUF2102 1/1 856 871 .. 89 104 .] 2.2 4.8
Chaperone_III 1/1 869 881 .. 81 93 .. 1.3 5.8
Lact_bio_phlase 1/1 878 897 .. 597 624 .. -1.0 6.8
DUF1803 1/1 907 921 .. 121 139 .] 2.6 3.4
Sulfotransfer_1 1/1 924 953 .. 312 339 .] 4.1 0.87
Ribosomal_L22e 1/1 942 958 .. 1 17 [. 1.3 5.4
DUF267 1/1 957 971 .. 352 366 .] 0.4 5.9
UPF0560 1/1 984 991 .. 1 8 [. -2.1 9.5
Cyclin 1/1 1010 1029 .. 1 20 [. -0.1 9.5
Ins_allergen_rp 1/1 1016 1025 .. 1 10 [. 3.2 4.7
DUF533 1/1 1054 1066 .. 196 208 .] 3.5 1.2
IpaD 1/1 1070 1083 .. 1 14 [. -1.8 9.6
H_PPase 1/1 1090 1136 .. 1 68 [. -1.4 7.3
Ssl1 1/1 1229 1243 .. 1 15 [. -2.6 8
Mfp-3 1/1 1232 1245 .. 58 71 .] 2.3 5.1
AAR2 1/1 1244 1269 .. 415 440 .] 3.0 1.4
FliM 1/1 1299 1313 .. 179 193 .] 3.7 0.98
DUF1779 1/1 1302 1308 .. 205 211 .] 1.9 0.56
DUF976 1/1 1347 1375 .. 141 171 .] 1.6 4.4
S4 1/1 1356 1369 .. 35 48 .] 3.5 6.3
DUF1805 1/1 1363 1376 .. 55 68 .] 2.8 3.6
DUF1828 1/1 1364 1382 .. 52 70 .. 6.8 0.42
Vps52 1/1 1367 1399 .. 564 596 .] 0.4 2
Branch_AA_trans 1/1 1402 1429 .. 383 417 .. -0.6 9.2
SpoU_sub_bind 1/1 1409 1418 .. 1 10 [. 2.8 6.1
US2 1/1 1453 1464 .. 1 13 [. 1.4 5.8
CW_binding_1 1/17 1557 1564 .. 12 19 .] 1.0 33
Porin_2 1/1 1589 1596 .. 1 9 [. 1.7 2.5
PIN 1/2 1605 1615 .. 1 11 [. 0.6 7.3
RRN3 1/1 1632 1646 .. 655 669 .] 1.4 1.8
SCPU 1/1 1695 1706 .. 58 69 .] 2.9 4.7
PIN 2/2 1719 1728 .. 1 10 [. 0.8 6.4
CW_binding_1 2/17 1834 1848 .. 1 15 [. 4.3 2.9
Peptidase_M4_C 1/1 1834 1842 .. 1 9 [. 0.2 9.4
CW_binding_1 3/17 1855 1870 .. 1 16 [. 10.7 0.028
CW_binding_1 4/17 1882 1895 .. 6 19 .] 8.4 0.15
CW_binding_1 5/17 1947 1966 .. 1 19 [] 6.8 0.48
CW_binding_1 6/17 1968 1986 .. 1 19 [] 17.0 0.00026
Pox_G5 1/1 1975 1987 .. 545 557 .] 2.2 0.28
CW_binding_1 7/17 1988 2006 .. 1 19 [] 21.8 7.9e-06
Adeno_knob 1/1 1997 2018 .. 62 85 .. -1.2 1
CW_binding_1 8/17 2008 2026 .. 1 19 [] 8.8 0.11
DUF2466 1/1 2014 2026 .. 113 125 .] 2.9 2.4
CW_binding_1 9/17 2078 2094 .. 1 16 [. 4.0 3.8
CW_binding_1 10/17 2105 2118 .. 6 19 .] 12.8 0.006
Citrus_P18 1/1 2111 2135 .. 143 167 .] 1.4 3.2
RE_AlwI 1/1 2118 2136 .. 1 20 [. 1.1 2.9
CW_binding_1 11/17 2120 2138 .. 1 19 [] 12.8 0.0058
CW_binding_1 12/17 2140 2158 .. 1 19 [] 3.7 4.4
MED6 1/1 2163 2176 .. 87 101 .] 0.6 9.8
Bmp 1/1 2194 2217 .. 349 372 .] 0.4 6.8
DUF553 1/1 2199 2226 .. 222 250 .] 2.4 2.1
CW_binding_1 13/17 2210 2227 .. 1 15 [. 8.3 0.16
RGP 1/1 2228 2242 .. 276 290 .. -1.5 9
CW_binding_1 14/17 2239 2252 .. 6 19 .] 10.7 0.028
CW_binding_1 15/17 2254 2272 .. 1 19 [] 14.8 0.0013
CW_binding_1 16/17 2274 2292 .. 1 19 [] 6.1 0.79
CW_binding_1 17/17 2324 2336 .. 1 13 [. 4.4 2.7
Alignments of top-scoring domains:
RTC: domain 1 of 1, from 9 to 21: score 3.1, E = 1.3
CS HHHHSS-EEEEEE
RF xxxxxxxxxxxxx
*->ieqFlgvkFeiee<-*
+e++ +v+F+++e
gi|1205703 9 LEKMANVRFRVQE 21
SelB-wing_2: domain 1 of 1, from 27 to 35: score 4.3, E = 3.7
*->lleaLaayH<-*
+l+aL++yH
gi|1205703 27 ILDALEEYH 35
Thr_dehydrat_C: domain 1 of 1, from 33 to 47: score 3.0, E = 2.9
CS EEECTTT-HHHHHCC
*->dyvdlsdneaakehL<-*
+y+++s n+++ ++L
gi|1205703 33 EYHNMSENTVVEKYL 47
Nrf1_DNA-bind: domain 1 of 1, from 53 to 78: score 0.6, E = 4.6
*->hALrkivinCYKyHGReDLLpaFaee<-*
+ L i YK+ GR+ L +F+e
gi|1205703 53 NSLTDTYIDTYKKSGRNKALKKFKEY 78
UPF0254: domain 1 of 1, from 65 to 80: score 4.1, E = 0.79
*->ksGIkraLkllesflk<-*
ksG +aLk ++++l+
gi|1205703 65 KSGRNKALKKFKEYLV 80
Ham1p_like: domain 1 of 1, from 68 to 79: score 9.1, E = 0.026
CS HHHHHHHHHHHH
*->RgkALkklkkwL<-*
R kALkk+k++L
gi|1205703 68 RNKALKKFKEYL 79
Mo25: domain 1 of 1, from 76 to 88: score 1.7, E = 1.9
*->KefiikqIesLpp<-*
Ke+++ +I +L++
gi|1205703 76 KEYLVTEILELKN 88
Prenylcys_lyase: domain 1 of 1, from 130 to 142: score -0.4, E = 5.5
*->leetdwfiiNvlk<-*
+ +++ f+iN lk
gi|1205703 130 FYDSNAFLINTLK 142
Peptidase_C1_2: domain 1 of 1, from 148 to 162: score -0.8, E = 6.2
CS SSHHHHHCHHHHHHC
*->eLtteklekFsknfn<-*
+ ++++le+F++n+n
gi|1205703 148 SASNDTLESFRENLN 162
CheR: domain 1 of 1, from 167 to 173: score 1.7, E = 2.8
*->NvTrFFR<-*
N+T FFR
gi|1205703 167 NHTAFFR 173
DUF965: domain 1 of 1, from 199 to 211: score 1.6, E = 4.5
*->DEilEELvksYLk<-*
D i+ +vk YL+
gi|1205703 199 DLIIDDIVKTYLS 211
DUF1679: domain 1 of 1, from 201 to 213: score 0.8, E = 5.2
*->LlEDvikvHesnl<-*
+++D++k+++sn
gi|1205703 201 IIDDIVKTYLSNE 213
SEA: domain 1 of 1, from 205 to 241: score 2.1, E = 5.8
*->iFr.ptteesavdkteiseeleaalrsqsgnlkidss<-*
i++++ ++e++ d++e+ + +e++l++ + n + d+
gi|1205703 205 IVKtYLSNEYSKDIDELNAYIEESLNKVTENSGNDVR 241
MutS_IV: domain 1 of 1, from 213 to 234: score 2.1, E = 7.8
*->gfdeeLDelrdlleeleeelae<-*
+++ ++Del +ee+ + + e
gi|1205703 213 EYSKDIDELNAYIEESLNKVTE 234
Spc97_Spc98: domain 1 of 1, from 215 to 237: score 0.3, E = 3.2
*->akdldeliaaHedfLdsilsgcf<-*
+kd+del a+ e+ L+++++++
gi|1205703 215 SKDIDELNAYIEESLNKVTENSG 237
Gly_transf_sug: domain 1 of 1, from 234 to 291: score 31.0, E = 1e-08
*->ydvilvtpdleslfkdtpaypwfqeafssardPGrwpKyynaaasDl
+ ++ +++e+ + ++ + ++qe rw+ + a asD
gi|1205703 234 ENSGNDVRNFEEFKTGEVFNLYEQELVE------RWN--L-AGASDI 271
lRlaiLykYGGiYlDtDvil<-*
lR aiL+ GG+YlD D+ +
gi|1205703 272 LRVAILKNIGGVYLDVDMLP 291
FMN_bind_2: domain 1 of 1, from 255 to 290: score 0.4, E = 9.3
*->hEasrmppqPWkvsdaPedyieamlkaIVGfeIeItrl<-*
+E+ + + W + a++ a lk+I G+ ++++ l
gi|1205703 255 YEQEL--VERWNLAGASDILRVAILKNIGGVYLDVDML 290
Rhabdo_ncap_2: domain 1 of 1, from 267 to 275: score -0.4, E = 9.2
*->GaSDlIReA<-*
GaSD+ R A
gi|1205703 267 GASDILRVA 275
Caps_synth: domain 1 of 1, from 269 to 287: score 2.6, E = 2.3
*->SDlLRveLLnrYGGiWiDa<-*
SD+LRv L++ GG+ +D+
gi|1205703 269 SDILRVAILKNIGGVYLDV 287
Aldolase: domain 1 of 1, from 274 to 295: score 1.4, E = 4.2
CS HHHHHHHTTTTTTEEEEECSS-TT
*->vkalKalaGPFaQvrFcPTGGIsP<-*
v+ lK+++G++ +v P GI+P
gi|1205703 274 VAILKNIGGVYLDVDMLP--GIHP 295
Baculo_Y142: domain 1 of 1, from 325 to 343: score -0.8, E = 5.8
*->kpFIreYlknNfnaldDst<-*
k++I+eY++ +f+ ld+++
gi|1205703 325 KEYIPEYTSKHFDTLDEEV 343
Utp13: domain 1 of 1, from 331 to 347: score 0.6, E = 9
*->YteRHfqRldrlvqksy<-*
Yt++Hf+ ld+ vq+s+
gi|1205703 331 YTSKHFDTLDEEVQSSF 347
Pec_lyase_C: domain 1 of 1, from 416 to 425: score 2.4, E = 4.9
CS -EEEEES-EE
*->gtILSEgNsF<-*
g I+S+gN F
gi|1205703 416 GPIISQGNDF 425
DUF2603: domain 1 of 1, from 429 to 437: score 1.0, E = 5.8
*->idelsesLG<-*
+++++esLG
gi|1205703 429 MNNFGESLG 437
DUF270: domain 1 of 1, from 454 to 458: score -3.7, E = 6.5
*->YLRlG<-*
YLR+G
gi|1205703 454 YLRVG 458
Bin3: domain 1 of 1, from 485 to 503: score 0.9, E = 7.9
*->FeeveillgvpnseskGFAk<-*
F e++i +++++se ++F +
gi|1205703 485 FKEMSIDTSILSSELRNF-E 503
GAL11: domain 1 of 1, from 505 to 531: score 1.9, E = 3.2
*->seaqlllPlteedkerlrqLyeevarnp<-*
+++ + ++ te+ k l q +ee+a+++
gi|1205703 505 PKVNISQA-TEQEKNSLWQFNEERAKIQ 531
TGT: domain 1 of 1, from 518 to 529: score 2.1, E = 3
CS THHHHHHHHHHC
*->gsllefveeflr<-*
+sl++f ee+++
gi|1205703 518 NSLWQFNEERAK 529
Pox_D2: domain 1 of 1, from 609 to 624: score -0.4, E = 9.4
*->FktGkaegsLvkvpYYYLP<-*
F ++ + v YYY P
gi|1205703 609 FQKNIEDSE---VAYYYNP 624
Asn_synthase: domain 1 of 1, from 636 to 646: score 0.8, E = 7.8
CS -S-HHHHT---
*->yLPdeileRpK<-*
++Pd i +RpK
gi|1205703 636 RIPDRISDRPK 646
Clp_N: domain 1 of 1, from 665 to 681: score 5.1, E = 1.3
CS TTS-HHHHHHHHHHHHH
*->aGvdldalreaiekllg<-*
aG+d+d l ++ie +l+
gi|1205703 665 AGLDVDSLSSEIETILD 681
Enterotoxin_a: domain 1 of 1, from 737 to 755: score 1.0, E = 4.4
CS HHHHGXXXXXHHHHHTTXX
*->llSdyqdefiiyngirdEL<-*
+ S +q e+ i+ +r EL
gi|1205703 737 IVSANQYEVRINSEGRREL 755
PalH: domain 1 of 1, from 773 to 786: score -0.3, E = 7.3
*->InnGdDmlfvdptsn<-*
I+ ++ ++++p++n
gi|1205703 773 ISS-KEYISFNPKEN 786
VTC: domain 1 of 1, from 782 to 803: score -0.2, E = 9.2
*->nRqetKYwVhpdnlmevktril<-*
n +e+K +V ++nl+e+ t ++
gi|1205703 782 NPKENKIIVKSKNLPELSTLLQ 803
Pox_A14: domain 1 of 1, from 810 to 817: score 1.9, E = 9.4
*->NSSeIELN<-*
NSS+IEL
gi|1205703 810 NSSDIELE 817
DUF1992: domain 1 of 1, from 835 to 845: score 3.5, E = 4.2
*->eslvEerIreA<-*
+vEerI+eA
gi|1205703 835 TQVVEERIEEA 845
Phage_Cox: domain 1 of 1, from 852 to 870: score 2.7, E = 3.1
*->mqiPYmDaenkviespsDlv<-*
+i Y+ e k+ies sD++
gi|1205703 852 -SINYIKNEFKLIESISDAL 870
DUF2102: domain 1 of 1, from 856 to 871: score 2.2, E = 4.8
*->LEeEvklLpkIsrALe<-*
++ E+kl+++Is AL
gi|1205703 856 IKNEFKLIESISDALY 871
Chaperone_III: domain 1 of 1, from 869 to 881: score 1.3, E = 5.8
CS EEEEEETTS-HHH
*->AlyrLpaiseeEe<-*
Aly+L +++e Ee
gi|1205703 869 ALYDLKQQNELEE 881
Lact_bio_phlase: domain 1 of 1, from 878 to 897: score -1.0, E = 6.8
*->diephHFitFedigekeGvLqGFLDaGY<-*
++e++HFi+Fedi++ D G+
gi|1205703 878 ELEESHFISFEDISKT--------DEGF 897
DUF1803: domain 1 of 1, from 907 to 921: score 2.6, E = 3.4
*->deqiWayvFideesliYqa<-*
+e+i F+++e++i+ +
gi|1205703 907 GESI----FVETEKAIFSE 921
Sulfotransfer_1: domain 1 of 1, from 924 to 953: score 4.1, E = 0.87
CS GTS-HHHHHHHHHHHH HH HHHHHHTTSS
*->nhftveqaekfdeiyq.hN.klyekmkgtg<-*
nh+t+e+++ d i+++ N+kl++k
gi|1205703 924 NHITEEISKLKDTIFDtVNgKLVKKVTLDA 953
Ribosomal_L22e: domain 1 of 1, from 942 to 958: score 1.3, E = 5.4
*->KkKVslkftvDctnpvE<-*
+ K +k t+D+t+ v+
gi|1205703 942 NGKLVKKVTLDATHEVN 958
DUF267: domain 1 of 1, from 957 to 971: score 0.4, E = 5.9
*->rktieiAyFvIPNlg<-*
++t+++A+F+ + +g
gi|1205703 957 VNTLNAAFFIQSLIG 971
UPF0560: domain 1 of 1, from 984 to 991: score -2.1, E = 9.5
*->vtLKVQVs<-*
v KVQV+
gi|1205703 984 VAMKVQVY 991
Cyclin: domain 1 of 1, from 1010 to 1029: score -0.1, E = 9.5
*->dellesisrvlerllalnds<-*
+ ++ ++++++++l++l+++
gi|1205703 1010 ELVSTALDETIDLLPTLSEG 1029
Ins_allergen_rp: domain 1 of 1, from 1016 to 1025: score 3.2, E = 4.7
*->ldDflALlPv<-*
ld++++LlP+
gi|1205703 1016 LDETIDLLPT 1025
DUF533: domain 1 of 1, from 1054 to 1066: score 3.5, E = 1.2
*->dpaLveqlEaqvg<-*
dp L++++Ea +g
gi|1205703 1054 DPLLRQEIEAKIG 1066
IpaD: domain 1 of 1, from 1070 to 1083: score -1.8, E = 9.6
*->qNisaltnsiivae<-*
N +a t ii+++
gi|1205703 1070 VNLTAATTAIITSS 1083
H_PPase: domain 1 of 1, from 1090 to 1136: score -1.4, E = 7.3
*->eaailllvplvaviaLlfaillvkwVlrkdeGsSsGgenYkveeeEg
+ +llvpl++++a + ++++ +lr++++
gi|1205703 1090 FS--ILLVPLAGISAGIPSLVNNELILRAEAK--------------- 1119
leDdsvterMkeIssAIaeGA<-*
+v++ + Is A +eGA
gi|1205703 1120 ----NVVDYFGHISLAESEGA 1136
Ssl1: domain 1 of 1, from 1229 to 1243: score -2.6, E = 8
*->kgYtWEggYvdGeRs<-*
++ WE+g G+Rs
gi|1205703 1229 RIFGWERGWTPGLRS 1243
Mfp-3: domain 1 of 1, from 1232 to 1245: score 2.3, E = 5.1
*->GWnrGWkRGrRGkr<-*
GW rGW G R
gi|1205703 1232 GWERGWTPGLRSLE 1245
AAR2: domain 1 of 1, from 1244 to 1269: score 3.0, E = 1.4
*->LerdLkskaeklkehltnkfgWdfdn<-*
Le+d ++ +++++h++++f+W+f +
gi|1205703 1244 LENDGTKLLDRIRDHYEGQFYWRFFA 1269
FliM: domain 1 of 1, from 1299 to 1313: score 3.7, E = 0.98
*->lclPyitiEPIrskL<-*
++ P+it E Ir+kL
gi|1205703 1299 FIVPVITTEYIREKL 1313
DUF1779: domain 1 of 1, from 1302 to 1308: score 1.9, E = 0.56
*->PIITtEY<-*
P ITtEY
gi|1205703 1302 PVITTEY 1308
DUF976: domain 1 of 1, from 1347 to 1375: score 1.6, E = 4.4
*->VnCEevvkdvnEfmdsdrdkfGeLeieilee<-*
++ +vv+dv ++sd+ k G+L ++il +
gi|1205703 1347 IDVDNVVRDVT--IESDKIKKGDLIENILSK 1375
S4: domain 1 of 1, from 1356 to 1369: score 3.5, E = 6.3
CS --TTTBEETTTCEE
*->vkdpsyrVkpgDei<-*
v++ s+++k gD i
gi|1205703 1356 VTIESDKIKKGDLI 1369
DUF1805: domain 1 of 1, from 1363 to 1376: score 2.8, E = 3.6
CS --TT-BHHHHGGGG
*->ikpGMtGrEALekl<-*
ik+G+ ++++L kl
gi|1205703 1363 IKKGDLIENILSKL 1376
DUF1828: domain 1 of 1, from 1364 to 1382: score 6.8, E = 0.42
*->kkykllenilskfGieldd<-*
kk++l+enilsk +ie+++
gi|1205703 1364 KKGDLIENILSKLSIEDNK 1382
Vps52: domain 1 of 1, from 1367 to 1399: score 0.4, E = 2
*->dlilgVLmeeesdlsKeqetfqEllnsstenFv<-*
dli ++L+ ++ +++K+ + +E ++s t n +
gi|1205703 1367 DLIENILSKLSIEDNKIILDNHEINFSGTLNGG 1399
Branch_AA_trans: domain 1 of 1, from 1402 to 1429: score -0.6, E = 9.2
*->lvTliisildgLkalgikigfslvegvlnslfkvL<-*
+v+l +sil+g++a++ + +l +++kvL
gi|1205703 1402 FVSLTFSILEGINAVIEV-------DLLSKSYKVL 1429
SpoU_sub_bind: domain 1 of 1, from 1409 to 1418: score 2.8, E = 6.1
CS EEESHHHHHH
*->lieGrhaVeE<-*
++eG++aV+E
gi|1205703 1409 ILEGINAVIE 1418
US2: domain 1 of 1, from 1453 to 1464: score 1.4, E = 5.8
*->mLeSevsgNqPYs<-*
L+Se+ N PYs
gi|1205703 1453 -LNSELQKNIPYS 1464
CW_binding_1: domain 1 of 17, from 1557 to 1564: score 1.0, E = 33
CS EEETTSCB
*->YfdsdGkm<-*
Y+d++G++
gi|1205703 1557 YLDENGVA 1564
Porin_2: domain 1 of 1, from 1589 to 1596: score 1.7, E = 2.5
*->MNItKSLLL<-*
MNI KS+++
gi|1205703 1589 MNI-KSIFI 1596
PIN: domain 1 of 2, from 1605 to 1615: score 0.6, E = 7.3
CS EEE-HHHHHHH
*->ivlDTnvlial<-*
+lDTn++i +
gi|1205703 1605 LILDTNFIISG 1615
RRN3: domain 1 of 1, from 1632 to 1646: score 1.4, E = 1.8
*->ispnyiewSevkgdy<-*
i+p++i++ + + y
gi|1205703 1632 IQPYFIKFNTLETKY 1646
SCPU: domain 1 of 1, from 1695 to 1706: score 2.9, E = 4.7
*->pAGtYqDTlsVt<-*
++G+Y+D + +t
gi|1205703 1695 SPGIYTDEINIT 1706
PIN: domain 2 of 2, from 1719 to 1728: score 0.8, E = 6.4
CS EEE-HHHHHH
*->ivlDTnvlia<-*
ivlDTn +++
gi|1205703 1719 IVLDTNYISE 1728
CW_binding_1: domain 2 of 17, from 1834 to 1848: score 4.3, E = 2.9
CS SEEEEETTEEEEEET
*->ngWikdngnWYYfds<-*
+g +++n++ YYf++
gi|1205703 1834 SGLVYINDSLYYFKP 1848
Peptidase_M4_C: domain 1 of 1, from 1834 to 1842: score 0.2, E = 9.4
CS T---SSCCH
*->aGLvYegqS<-*
+GLvY + S
gi|1205703 1834 SGLVYINDS 1842
CW_binding_1: domain 3 of 17, from 1855 to 1870: score 10.7, E = 0.028
CS SEEEEETTEEEEEETT
*->ngWikdngnWYYfdsd<-*
+g+ ++++++YYf++d
gi|1205703 1855 TGFTTIGDDKYYFNPD 1870
CW_binding_1: domain 4 of 17, from 1882 to 1895: score 8.4, E = 0.15
CS ETTEEEEEETTSCB
*->dngnWYYfdsdGkm<-*
++g+ YYf ++G++
gi|1205703 1882 IDGKNYYFSQNGVL 1895
CW_binding_1: domain 5 of 17, from 1947 to 1966: score 6.8, E = 0.48
CS SEEEEETTEEEEE ETTSCB
*->ngWikdngnWYYf.dsdGkm<-*
+W++ ++ YYf+ ++G++
gi|1205703 1947 IEWQTLDDEVYYFsTDTGRA 1966
CW_binding_1: domain 6 of 17, from 1968 to 1986: score 17.0, E = 0.00026
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g +++++++Yf+sdG m
gi|1205703 1968 KGLNQIGDDKFYFNSDGIM 1986
Pox_G5: domain 1 of 1, from 1975 to 1987: score 2.2, E = 0.28
*->edkFYFnksiiIk<-*
+dkFYFn+ i
gi|1205703 1975 DDKFYFNSDGIMQ 1987
CW_binding_1: domain 7 of 17, from 1988 to 2006: score 21.8, E = 7.9e-06
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g++++n++ +Yfd++G+m
gi|1205703 1988 KGFVNINDKTFYFDDSGVM 2006
Adeno_knob: domain 1 of 1, from 1997 to 2018: score -1.2, E = 1
CS EEEEETTSEBESS.TTSBBTTTT-
*->kLlFDsnGvLltsYssaLldktYW<-*
+++FD+ Gv +++Y++ +d+ Y+
gi|1205703 1997 TFYFDDSGVMKSGYTE--IDGRYF 2018
CW_binding_1: domain 8 of 17, from 2008 to 2026: score 8.8, E = 0.11
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g+ +++g ++Yf ++G+m
gi|1205703 2008 SGYTEIDGRYFYFAENGEM 2026
DUF2466: domain 1 of 1, from 2014 to 2026: score 2.9, E = 2.4
*->dgeyvSFrEeGlL<-*
dg+y+ F+E+G +
gi|1205703 2014 DGRYFYFAENGEM 2026
CW_binding_1: domain 9 of 17, from 2078 to 2094: score 4.0, E = 3.8
CS SEEEEE TTEEEEEETT
*->ngWikd.ngnWYYfdsd<-*
gW+ ++g++YYfd++
gi|1205703 2078 VGWKDLeDGSKYYFDEN 2094
CW_binding_1: domain 10 of 17, from 2105 to 2118: score 12.8, E = 0.006
CS ETTEEEEEETTSCB
*->dngnWYYfdsdGkm<-*
+n+++YYf+++G m
gi|1205703 2105 INDGKYYFNDSGIM 2118
Citrus_P18: domain 1 of 1, from 2111 to 2135: score 1.4, E = 3.2
*->WFYnnGtFqnGLtRCnnLvaLFsat<-*
+F + G+ q G + nn v Fs
gi|1205703 2111 YFNDSGIMQIGFVTINNEVFYFSDS 2135
RE_AlwI: domain 1 of 1, from 2118 to 2136: score 1.1, E = 2.9
*->kelGFiylkengkiliTeaG<-*
+++GF++++ n+++ +++G
gi|1205703 2118 MQIGFVTIN-NEVFYFSDSG 2136
CW_binding_1: domain 11 of 17, from 2120 to 2138: score 12.8, E = 0.0058
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
g++++n+ +Yf ++G
gi|1205703 2120 IGFVTINNEVFYFSDSGIV 2138
CW_binding_1: domain 12 of 17, from 2140 to 2158: score 3.7, E = 4.4
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g +++++n++Y+ ++G
gi|1205703 2140 SGMQNIDDNYFYISENGLV 2158
MED6: domain 1 of 1, from 2163 to 2176: score 0.6, E = 9.8
*->fnPsqnGysyPelsn<-*
f++s+ Gy y+ +n
gi|1205703 2163 FDTSD-GYKYFAPAN 2176
Bmp: domain 1 of 1, from 2194 to 2217: score 0.4, E = 6.8
*->evvkevlkkgnKiiikeisvpane<-*
+v+++v ++g+++ i++++++++e
gi|1205703 2194 RVNEDVYSFGESYTIETGWIYDSE 2217
DUF553: domain 1 of 1, from 2199 to 2226: score 2.4, E = 2.1
*->ietikeegkiIenitvYrvelendgitle<-*
++ + e++ Ie+ +Y++e+e d+++++
gi|1205703 2199 VYSFG-ESYTIETGWIYDSENESDKYYFD 2226
CW_binding_1: domain 13 of 17, from 2210 to 2227: score 8.3, E = 0.16
CS SEEEEE T TEEEEEET
*->ngWikd..n.gnWYYfds<-*
+gWi+d++n++++YYfd+
gi|1205703 2210 TGWIYDseNeSDKYYFDP 2227
RGP: domain 1 of 1, from 2228 to 2242: score -1.5, E = 9
*->eslKEyeGvkvmddv<-*
e +K y+G+ v dd+
gi|1205703 2228 EAKKAYKGINVIDDI 2242
CW_binding_1: domain 14 of 17, from 2239 to 2252: score 10.7, E = 0.028
CS ETTEEEEEETTSCB
*->dngnWYYfdsdGkm<-*
+++ +YYfd++G m
gi|1205703 2239 IDDIKYYFDENGIM 2252
CW_binding_1: domain 15 of 17, from 2254 to 2272: score 14.8, E = 0.0013
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g i+ +n YYf++dG+m
gi|1205703 2254 TGLITFEDNHYYFNEDGEM 2272
CW_binding_1: domain 16 of 17, from 2274 to 2292: score 6.1, E = 0.79
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
g+ ++ ++ +Yf +dG m
gi|1205703 2274 YGYLNIEDKMFYFSEDGIM 2292
CW_binding_1: domain 17 of 17, from 2324 to 2336: score 4.4, E = 2.7
CS SEEEEETTEEEEE
*->ngWikdngnWYYf<-*
+gW +++ YYf
gi|1205703 2324 TGWLDLDEKRYYF 2336
//