hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 12057037.fa
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Query sequence: gi|12057037|emb|CAC19893.1|
Accession: [none]
Description: truncated toxin A [Clostridium difficile]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Gly_transf_sug Glycosyltransferase sugar-binding reg 24.7 7.7e-07 1
NS3_envE Non-structural protein NS3/Small enve 10.7 0.015 1
mRNA_cap_enzyme mRNA capping enzyme, catalytic domain 1.5 0.35 1
MPP6 M-phase phosphoprotein 6 2.4 1.8 1
Caps_synth Capsular polysaccharide synthesis pro 2.1 3.1 1
RNA_pol_Rpc34 RNA polymerase Rpc34 subunit 1.6 3.2 1
UPF0058 Uncharacterised protein family UPF005 2.2 3.3 1
Antimicrobial16 Double glycine cleavage site bacterio 3.1 3.8 1
Glyco_transf_25 Glycosyltransferase family 25 (LPS bi 2.5 4.4 1
DUF2224 Uncharacterized conserved protein (DU 0.4 4.8 1
EF-1_beta_acid Eukaryotic elongation factor 1 beta c 3.1 5.3 1
Glyco_hydro_10 Glycosyl hydrolase family 10 0.1 5.5 1
MRP-S22 Mitochondrial 28S ribosomal protein S -0.4 7.4 1
DJ-1_PfpI DJ-1/PfpI family 1.1 7.5 1
P22_AR_C P22AR C-terminal domain 2.3 7.9 1
ATP-synt_E_2 ATP synthase epsilon subunit 2.1 7.9 1
Transposase_35 Putative transposase DNA-binding doma 2.6 8.1 1
DUF2429 Domain of unknown function (DUF2429) 0.2 8.9 1
SelB-wing_2 Elongation factor SelB, winged helix 2.8 9.3 1
Baculo_Y142 Baculovirus Y142 protein -1.5 9.3 1
Hexokinase_2 Hexokinase 0.4 9.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UPF0058 1/1 1 12 [. 1 13 [. 2.2 3.3
MRP-S22 1/1 8 18 .. 257 269 .] -0.4 7.4
DUF2224 1/1 28 38 .. 538 548 .] 0.4 4.8
ATP-synt_E_2 1/1 71 81 .. 46 56 .] 2.1 7.9
Antimicrobial16 1/1 77 90 .. 29 42 .] 3.1 3.8
RNA_pol_Rpc34 1/1 92 119 .. 312 345 .] 1.6 3.2
Transposase_35 1/1 118 129 .. 61 72 .] 2.6 8.1
mRNA_cap_enzyme 1/1 153 171 .. 129 147 .. 1.5 0.35
NS3_envE 1/1 177 204 .. 59 85 .] 10.7 0.015
Glyco_transf_25 1/1 183 205 .. 222 243 .] 2.5 4.4
Gly_transf_sug 1/1 243 290 .. 12 67 .. 24.7 7.7e-07
SelB-wing_2 1/1 256 273 .. 41 58 .] 2.8 9.3
Caps_synth 1/1 268 286 .. 124 142 .. 2.1 3.1
Baculo_Y142 1/1 323 338 .. 30 45 .. -1.5 9.3
MPP6 1/1 338 365 .. 43 71 .. 2.4 1.8
Hexokinase_2 1/1 399 450 .. 112 164 .. 0.4 9.6
Glyco_hydro_10 1/1 435 444 .. 38 47 .. 0.1 5.5
P22_AR_C 1/1 503 518 .. 1 18 [. 2.3 7.9
EF-1_beta_acid 1/1 622 649 .. 1 28 [] 3.1 5.3
DJ-1_PfpI 1/1 649 671 .. 1 37 [. 1.1 7.5
DUF2429 1/1 671 688 .. 127 144 .] 0.2 8.9
Alignments of top-scoring domains:
UPF0058: domain 1 of 1, from 1 to 12: score 2.2, E = 3.3
*->MhGqFGKEELiqL<-*
M+ KEELi+L
gi|1205703 1 MS-LISKEELIKL 12
MRP-S22: domain 1 of 1, from 8 to 18: score -0.4, E = 7.4
*->eLirLtkiLhkiP<-*
eLi L ++++ P
gi|1205703 8 ELIKLAYSIR--P 18
DUF2224: domain 1 of 1, from 28 to 38: score 0.4, E = 4.8
*->tsLkefdklVd<-*
t+L+e++kl +
gi|1205703 28 TNLDEYNKLTT 38
ATP-synt_E_2: domain 1 of 1, from 71 to 81: score 2.1, E = 7.9
*->LdklKrkvLKE<-*
L lK+ +LKE
gi|1205703 71 LSNLKKDILKE 81
Antimicrobial16: domain 1 of 1, from 77 to 90: score 3.1, E = 3.8
*->elLyeliliKfkit<-*
++L e+iliK +t
gi|1205703 77 DILKEVILIKNSNT 90
RNA_pol_Rpc34: domain 1 of 1, from 92 to 119: score 1.6, E = 3.2
*->PVvddCeegiFNYFKmFPgevspitCeYmdeWLe<-*
PV+++ ++ gevs+i eY + W +
gi|1205703 92 PVEKNLHFV------WIGGEVSDIVLEYIKQWAD 119
Transposase_35: domain 1 of 1, from 118 to 129: score 2.6, E = 8.1
*->RDvNAAiNIlkr<-*
+D+NA +NI+++
gi|1205703 118 ADINAEYNIRLW 129
mRNA_cap_enzyme: domain 1 of 1, from 153 to 171: score 1.5, E = 0.35
CS HHHHHHHTCCHHHHCCHH-
*->leilkkeiikPrneekkfk<-*
l+ l++ei++P+++++kf+
gi|1205703 153 LQLLEEEIQNPQFDNMKFY 171
NS3_envE: domain 1 of 1, from 177 to 204: score 10.7, E = 0.015
*->YlynRskqlYkyYneev.kPPvLevDDv<-*
++y R k + +yY +++kP vL +DD
gi|1205703 177 FIYDRQKRFINYYKSQInKPTVLTIDDI 204
Glyco_transf_25: domain 1 of 1, from 183 to 205: score 2.5, E = 4.4
*->kklLkyl.knwpsdellpvDdlm<-*
k++++y++ +++++ l +Dd++
gi|1205703 183 KRFINYYkSQINKPTVLTIDDII 205
Gly_transf_sug: domain 1 of 1, from 243 to 290: score 24.7, E = 7.7e-07
*->slfkdtpaypwfqeafssardPGrwpKyynaaasDllRlaiLykYGG
slf ++ + +++++ ++ + ++aaasD +Rl+ L+ +GG
gi|1205703 243 SLFTEQELLNIYNQELL------NRG--NLAAASDIVRLLALKNFGG 281
iYlDtDvil<-*
+YlD D+ +
gi|1205703 282 VYLDVDMLP 290
SelB-wing_2: domain 1 of 1, from 256 to 273: score 2.8, E = 9.3
*->eallaeGrLklegdwvhL<-*
++ll G L++ d+v+L
gi|1205703 256 QELLNRGNLAAASDIVRL 273
Caps_synth: domain 1 of 1, from 268 to 286: score 2.1, E = 3.1
*->SDlLRveLLnrYGGiWiDa<-*
SD++R+ L+++GG+ +D+
gi|1205703 268 SDIVRLLALKNFGGVYLDV 286
Baculo_Y142: domain 1 of 1, from 323 to 338: score -1.5, E = 9.3
*->kpFIreYlknNfnald<-*
k +I++Y+++Nf+ ld
gi|1205703 323 KKYINNYTSENFDKLD 338
MPP6: domain 1 of 1, from 338 to 365: score 2.4, E = 1.8
*->dkmLketekfiieEpSyviCyDYAKLEdL<-*
d+ Lk k+ii E++ + C + KLE+L
gi|1205703 338 DQQLKDNFKLII-ESKSEKCEIFSKLENL 365
Hexokinase_2: domain 1 of 1, from 399 to 450: score 0.4, E = 9.6
CS TTCCCTTTSSTHHHHH HHHT-STTSCHHHHHHHHHHTT---HHHHH
*->spkLktpgsfeTsvlS.rIEsDpsenledvraiLqtaLgletTdeer
++++k++++f +l ++IEsD n+ d+ +i+ ++L+ + T+e +
gi|1205703 399 IEQIKNRYQFLNQHLNpAIESD--NNFTDTTKIFHDSLFNSATAENS 443
CS HHHHHHH
klvrrvC<-*
++ +++
gi|1205703 444 MFLTKIA 450
Glyco_hydro_10: domain 1 of 1, from 435 to 444: score 0.1, E = 5.5
CS -SEEEESSTT
*->FNsiTpENeM<-*
FNs T+EN+M
gi|1205703 435 FNSATAENSM 444
P22_AR_C: domain 1 of 1, from 503 to 518: score 2.3, E = 7.9
*->ekkCPytqeFTEeELqsL<-*
++ ++TE+E++sL
gi|1205703 503 PEN--NLSQLTEQEINSL 518
EF-1_beta_acid: domain 1 of 1, from 622 to 649: score 3.1, E = 5.3
*->LFGSddeeedeeaekire.eRlaeyaakk<-*
F Sdd e e +k r +eRl++ ++ k
gi|1205703 622 -FLSDDGESILELNKYRIpERLKNKEKVK 649
DJ-1_PfpI: domain 1 of 1, from 649 to 671: score 1.1, E = 7.5
CS EEEEEESSTTC-..-EEE-TTS......TSCHEEECS
*->evtvvspnkgkgdcvevkgkrgggaqyekggvkvtad<-*
+vt+++++k+ e++++ ++ +++ +d
gi|1205703 649 KVTFIGHGKD-----EFNTS--------EF-ARLSVD 671
DUF2429: domain 1 of 1, from 671 to 688: score 0.2, E = 8.9
*->DAmqtEmssrfdvvknei<-*
D + +E+ss +d++k +i
gi|1205703 671 DSLSNEISSFLDTIKLDI 688
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