hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 123227887.fa
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Query sequence: gi|123227887|emb|CAM17990.1|
Accession: [none]
Description: nasal embryonic LHRH factor [Mus musculus]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
UPF0547 Uncharacterised protein family UPF054 11.1 0.052 1
PRD PRD domain 3.7 2.6 1
DUF551 Protein of unknown function (DUF551) 1.9 3.2 1
Agro_virD5 Agrobacterium VirD5 protein -0.8 3.6 1
AMP_N Aminopeptidase P, N-terminal domain 1.9 4.4 1
TIR TIR domain 0.9 5.4 1
IMPDH IMP dehydrogenase / GMP reductase dom 0.6 6 1
c-SKI_SMAD_bind c-SKI Smad4 binding domain 1.6 6.1 1
NUP Purine nucleoside permease (NUP) -0.2 6.3 1
Orthopox_N1 Orthopoxvirus N1 protein 0.7 6.4 1
IFRD Interferon-related developmental regu -0.2 6.5 1
PSI Plexin repeat 1.7 7.6 1
IQ IQ calmodulin-binding motif 3.4 8.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Agro_virD5 1/1 102 131 .. 740 769 .. -0.8 3.6
PSI 1/1 157 170 .. 50 63 .] 1.7 7.6
UPF0547 1/1 167 177 .. 1 11 [. 11.1 0.052
DUF551 1/1 190 196 .. 74 80 .] 1.9 3.2
IQ 1/1 229 243 .. 1 15 [. 3.4 8.4
AMP_N 1/1 251 262 .. 1 12 [. 1.9 4.4
NUP 1/1 321 329 .. 1 9 [. -0.2 6.3
c-SKI_SMAD_bind 1/1 357 373 .. 82 98 .] 1.6 6.1
IFRD 1/1 358 369 .. 354 365 .] -0.2 6.5
PRD 1/1 362 374 .. 1 13 [. 3.7 2.6
TIR 1/1 409 424 .. 131 150 .] 0.9 5.4
Orthopox_N1 1/1 478 491 .. 100 113 .] 0.7 6.4
IMPDH 1/1 499 507 .] 1 9 [. 0.6 6
Alignments of top-scoring domains:
Agro_virD5: domain 1 of 1, from 102 to 131: score -0.8, E = 3.6
*->YtvsRDPvLsPPsKeqapqLLHLGpRGqtE<-*
Yt+sR+P L+P s +a +L + R q E
gi|1232278 102 YTISREPALLPGSEAEAIELAVVKGRRQRE 131
PSI: domain 1 of 1, from 157 to 170: score 1.7, E = 7.6
CS ..B..TT-BCCCSS
*->dqwldwswsssqCp<-*
++w ++ + s+ Cp
gi|1232278 157 QSWAGSRQGSKECP 170
UPF0547: domain 1 of 1, from 167 to 177: score 11.1, E = 0.052
*->KtCPeCdaivp<-*
K+CP+C ++vp
gi|1232278 167 KECPGCAQLVP 177
DUF551: domain 1 of 1, from 190 to 196: score 1.9, E = 3.2
*->PLPEPPq<-*
PLPE+P
gi|1232278 190 PLPEAPG 196
IQ: domain 1 of 1, from 229 to 243: score 3.4, E = 8.4
CS HHHCHHHHHHHHHHH
*->rraaikIQaawRGyl<-*
+ a +++Qa +R +l
gi|1232278 229 QTATTTMQANFRKHL 243
AMP_N: domain 1 of 1, from 251 to 262: score 1.9, E = 4.4
*->ipadefaaRRkr<-*
++a+ fa+RR+r
gi|1232278 251 VKAQTFAERRER 262
NUP: domain 1 of 1, from 321 to 329: score -0.2, E = 6.3
*->iqpKVmvIt<-*
+pKVm+I+
gi|1232278 321 LPPKVMLIS 329
c-SKI_SMAD_bind: domain 1 of 1, from 357 to 373: score 1.6, E = 6.1
CS CHHHHHHHHHHHHCC--
*->eeakLeqvLeevkekFd<-*
e+a+ e +Lee++ k +
gi|1232278 357 EHATFEDILEEIEKKLN 373
IFRD: domain 1 of 1, from 358 to 369: score -0.2, E = 6.5
*->RstFRDVlrfvE<-*
++tF D+l+ +E
gi|1232278 358 HATFEDILEEIE 369
PRD: domain 1 of 1, from 362 to 374: score 3.7, E = 2.6
CS HHHHHHHHHHHTS
*->eelleeiekklqi<-*
e++leeiekkl+i
gi|1232278 362 EDILEEIEKKLNI 374
TIR: domain 1 of 1, from 409 to 424: score 0.9, E = 5.4
CS SG.....GGCCHHHHHHHHH
*->dktersqsdrikfWkkalya<-*
+k+e d+i+fWk++
gi|1232278 409 EKEE----DMIHFWKRLSRL 424
Orthopox_N1: domain 1 of 1, from 478 to 491: score 0.7, E = 6.4
*->rmiekyfddlmidl<-*
+mie+yfd + l
gi|1232278 478 QMIETYFDFRLYRL 491
IMPDH: domain 1 of 1, from 499 to 507: score 0.6, E = 6
CS EB-GGGGEE
RF xxxxxxxxx
*->egLTFDDVL<-*
+ L+FDDVL
gi|1232278 499 KLLDFDDVL 507
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