hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 125816130.fa
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Query sequence: gi|125816130|ref|XP_698398.2|
Accession: [none]
Description: PREDICTED: similar to nasal embryonic LHRH factor [Danio rerio]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
IQ IQ calmodulin-binding motif 5.6 1.9 1
TP1 Nuclear transition protein 1 3.4 2.1 1
Peptidase_S30 Potyvirus P1 protease 2.3 2.7 1
SHD1 SLA1 homology domain 1, SHD1 3.3 2.7 1
Ribosomal_L29 Ribosomal L29 protein 4.6 2.9 1
HTH_10 HTH DNA binding domain 3.5 3 1
PHA_synth_III_E Poly(R)-hydroxyalkanoic acid synthase 0.9 3.9 1
DUF2569 Protein of unknown function (DUF2569) 1.0 5.8 1
DUF1757 Protein of unknown function (DUF1757) 0.8 5.9 1
Docking Erythronolide synthase docking 3.4 6.4 1
UPF0150 Uncharacterised protein family (UPF01 2.8 6.5 1
Spore_SspJ Small spore protein J (Spore_SspJ) 2.1 6.7 1
DUF2604 Protein of Unknown function (DUF2604) 1.0 7.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Spore_SspJ 1/1 4 12 .. 39 47 .] 2.1 6.7
SHD1 1/1 92 110 .. 1 19 [. 3.3 2.7
Ribosomal_L29 1/1 129 138 .. 50 59 .] 4.6 2.9
DUF1757 1/1 278 296 .. 1 17 [. 0.8 5.9
IQ 1/1 289 307 .. 1 19 [. 5.6 1.9
Peptidase_S30 1/1 293 335 .. 1 43 [. 2.3 2.7
PHA_synth_III_E 1/1 295 314 .. 301 320 .] 0.9 3.9
TP1 1/1 306 326 .. 38 54 .] 3.4 2.1
DUF2569 1/1 331 342 .. 152 162 .] 1.0 5.8
HTH_10 1/1 443 458 .. 38 53 .] 3.5 3
DUF2604 1/1 527 540 .. 58 71 .. 1.0 7.7
Docking 1/1 529 543 .. 1 15 [. 3.4 6.4
UPF0150 1/1 555 570 .. 35 50 .] 2.8 6.5
Alignments of top-scoring domains:
Spore_SspJ: domain 1 of 1, from 4 to 12: score 2.1, E = 6.7
*->AvqKKKnnR<-*
Av KKKn R
gi|1258161 4 AVSKKKNLR 12
SHD1: domain 1 of 1, from 92 to 110: score 3.3, E = 2.7
*->SrskdkPdpsKvRtWtDRs<-*
S+s + P +sK R+ + Rs
gi|1258161 92 SQSAPLPTSSKRRLSVERS 110
Ribosomal_L29: domain 1 of 1, from 129 to 138: score 4.6, E = 2.9
CS HHHHHHHHHT
*->ARilTvlrEk<-*
AR++T+ rE+
gi|1258161 129 ARVYTITRER 138
DUF1757: domain 1 of 1, from 278 to 296: score 0.8, E = 5.9
*->sWF..kNfagfsqseielq<-*
sWF+++N++ f+ +++q
gi|1258161 278 SWFpkENMFSFQTATTTMQ 296
IQ: domain 1 of 1, from 289 to 307: score 5.6, E = 1.9
CS HHHCHHHHHHHHHHHHHHH
*->rraaikIQaawRGylaRkr<-*
+ a +++Qaa+RG Rkr
gi|1258161 289 QTATTTMQAAFRGIAERKR 307
Peptidase_S30: domain 1 of 1, from 293 to 335: score 2.3, E = 2.7
*->adleakvaerllrkeekldqmskikqekkgrvilrklspkqva<-*
+ ++a+ + + +rk++k+ q++++ +e+++r +lr+ +++v+
gi|1258161 293 TTMQAAFRGIAERKRRKREQEATALMERNFRKHLRMVGSRRVK 335
PHA_synth_III_E: domain 1 of 1, from 295 to 314: score 0.9, E = 3.9
*->LdtahrRlqElrRelrrLkr<-*
+ +a r+++E +R r++ +
gi|1258161 295 MQAAFRGIAERKRRKREQEA 314
TP1: domain 1 of 1, from 306 to 326: score 3.4, E = 2.1
*->KsRKRgDDA....nRnyRsHL<-*
K RKR +A+ +Rn+R HL
gi|1258161 306 KRRKREQEAtalmERNFRKHL 326
DUF2569: domain 1 of 1, from 331 to 342: score 1.0, E = 5.8
*->SkRVK.eTFver<-*
S RVK +TFv r
gi|1258161 331 SRRVKaQTFVDR 342
HTH_10: domain 1 of 1, from 443 to 458: score 3.5, E = 3
*->sTlsehLRrAerKlie<-*
+T+ ++L +e+Kl +
gi|1258161 443 ATFDDILEEIEKKLTA 458
DUF2604: domain 1 of 1, from 527 to 540: score 1.0, E = 7.7
*->yGftngvkLFLsLK<-*
+G +ng kLF +LK
gi|1258161 527 LGNANGEKLFQNLK 540
Docking: domain 1 of 1, from 529 to 543: score 3.4, E = 6.4
*->manEeKLrdYLKRvT<-*
an eKL LKR +
gi|1258161 529 NANGEKLFQNLKRLM 543
UPF0150: domain 1 of 1, from 555 to 570: score 2.8, E = 6.5
*->EAlenakEAlelhleg<-*
E+ + kE++e+++++
gi|1258161 555 ELSAQGKEMIEMYFDF 570
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