hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 126302669.fa
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Query sequence: gi|126302669|ref|XP_001367372.1|
Accession: [none]
Description: PREDICTED: similar to nasal embryonic LHRH factor isoform 2 [Monodelphis domestica]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
IQ IQ calmodulin-binding motif 18.3 0.0003 2
Peptidase_M22 Glycoprotease family 7.5 0.049 1
UPF0547 Uncharacterised protein family UPF054 7.1 0.71 1
TP1 Nuclear transition protein 1 3.1 2.4 1
PRD PRD domain 3.7 2.6 1
Gemini_AL2 Geminivirus AL2 protein 2.8 3.3 1
DUF1183 Protein of unknown function (DUF1183) -1.8 3.4 1
AMP_N Aminopeptidase P, N-terminal domain 1.9 4.4 1
TIR TIR domain 0.9 5.4 1
c-SKI_SMAD_bind c-SKI Smad4 binding domain 1.6 6.1 1
Orthopox_N1 Orthopoxvirus N1 protein 0.7 6.4 1
NUP Purine nucleoside permease (NUP) -0.2 6.5 1
IFRD Interferon-related developmental regu -0.2 6.5 1
LuxS S-Ribosylhomocysteinase (LuxS) 0.8 8.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Peptidase_M22 1/1 88 120 .. 267 308 .] 7.5 0.049
Gemini_AL2 1/1 100 149 .. 68 118 .. 2.8 3.3
UPF0547 1/1 162 173 .. 1 12 [. 7.1 0.71
LuxS 1/1 174 183 .. 1 10 [. 0.8 8.9
IQ 1/2 224 242 .. 1 19 [. 10.8 0.052
TP1 1/1 241 261 .. 38 54 .] 3.1 2.4
IQ 2/2 247 261 .. 1 15 [. 7.5 0.49
AMP_N 1/1 269 280 .. 1 12 [. 1.9 4.4
DUF1183 1/1 278 304 .. 362 396 .. -1.8 3.4
NUP 1/1 339 347 .. 1 9 [. -0.2 6.5
c-SKI_SMAD_bind 1/1 375 391 .. 82 98 .] 1.6 6.1
IFRD 1/1 376 387 .. 354 365 .] -0.2 6.5
PRD 1/1 380 392 .. 1 13 [. 3.7 2.6
TIR 1/1 427 442 .. 131 150 .] 0.9 5.4
Orthopox_N1 1/1 496 509 .. 100 113 .] 0.7 6.4
Alignments of top-scoring domains:
Peptidase_M22: domain 1 of 1, from 88 to 120: score 7.5, E = 0.049
*->aanklLkagltkdnve.feltgfvsfiePlvlYLrdnvAeiak<-*
a++k+ +g++ v+++ g eP+ +L+d++Ae++
gi|1263026 88 AGEKAASEGPK-PRVYtI--SG-----EPP--LLSDPEAEGIE 120
Gemini_AL2: domain 1 of 1, from 100 to 149: score 2.8, E = 3.3
*->RlYLggsKSPLFQdnqtrqetihleprhishpntVQPQPeESvGssQ
R+Y + ++PL+ d+++ ++ ++ ++++ Q+QP ++ ss
gi|1263026 100 RVYTISGEPPLLSDPEAEGIELSVMKGRHR-GEHHQSQPLQGSSSSE 145
vlse<-*
+ s+
gi|1263026 146 SVSR 149
UPF0547: domain 1 of 1, from 162 to 173: score 7.1, E = 0.71
*->KtCPeCdaivpl<-*
K+CP+C+++ p+
gi|1263026 162 KECPGCSQLAPA 173
LuxS: domain 1 of 1, from 174 to 183: score 0.8, E = 8.9
CS -SGGGGGSGT
*->plveSFtlDH<-*
p+ SF+lDH
gi|1263026 174 PSQQSFELDH 183
IQ: domain 1 of 2, from 224 to 242: score 10.8, E = 0.052
CS HHHCHHHHHHHHHHHHHHH
*->rraaikIQaawRGylaRkr<-*
+ a +++Qa++RGy Rkr
gi|1263026 224 QTATTTMQAVFRGYAERKR 242
TP1: domain 1 of 1, from 241 to 261: score 3.1, E = 2.4
*->KsRKRgDDAn....RnyRsHL<-*
K RKR D +Rn+R HL
gi|1263026 241 KRRKRENDSAaviqRNFRKHL 261
IQ: domain 2 of 2, from 247 to 261: score 7.5, E = 0.49
CS HHHCHHHHHHHHHHH
*->rraaikIQaawRGyl<-*
++a +IQ+ +R +l
gi|1263026 247 NDSAAVIQRNFRKHL 261
AMP_N: domain 1 of 1, from 269 to 280: score 1.9, E = 4.4
*->ipadefaaRRkr<-*
++a+ fa+RR+r
gi|1263026 269 VKAQTFAERRER 280
DUF1183: domain 1 of 1, from 278 to 304: score -1.8, E = 3.4
*->ygrnysntWgrPsyipseesrirswgyssdsgess<-*
+ r++s +W++P++i + +++ ds+ s+
gi|1263026 278 RERSFSRSWSDPTPIKT--------DSFHDSRDSH 304
NUP: domain 1 of 1, from 339 to 347: score -0.2, E = 6.5
*->iqpKVmvIt<-*
+pKVm+I+
gi|1263026 339 APPKVMLIS 347
c-SKI_SMAD_bind: domain 1 of 1, from 375 to 391: score 1.6, E = 6.1
CS CHHHHHHHHHHHHCC--
*->eeakLeqvLeevkekFd<-*
e+a+ e +Lee++ k +
gi|1263026 375 EHATFEDILEEIEKKLN 391
IFRD: domain 1 of 1, from 376 to 387: score -0.2, E = 6.5
*->RstFRDVlrfvE<-*
++tF D+l+ +E
gi|1263026 376 HATFEDILEEIE 387
PRD: domain 1 of 1, from 380 to 392: score 3.7, E = 2.6
CS HHHHHHHHHHHTS
*->eelleeiekklqi<-*
e++leeiekkl+i
gi|1263026 380 EDILEEIEKKLNI 392
TIR: domain 1 of 1, from 427 to 442: score 0.9, E = 5.4
CS SG.....GGCCHHHHHHHHH
*->dktersqsdrikfWkkalya<-*
+k+e d+i+fWk++
gi|1263026 427 EKEE----DMIHFWKRLSRL 442
Orthopox_N1: domain 1 of 1, from 496 to 509: score 0.7, E = 6.4
*->rmiekyfddlmidl<-*
+mie+yfd + l
gi|1263026 496 QMIETYFDFRLYRL 509
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