hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 126311142.fa
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Query sequence: gi|126311142|ref|XP_001380846.1|
Accession: [none]
Description: PREDICTED: hypothetical protein [Monodelphis domestica]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RhoGEF RhoGEF domain 120.8 2.2e-35 1
F-box F-box domain 28.2 4.8e-07 1
SMI1_KNR4 SMI1 / KNR4 family 9.5 0.035 1
RPN7 26S proteasome subunit RPN7 4.0 1.2 1
IL6 Interleukin-6/G-CSF/MGF family 3.4 1.3 1
DUF444 Protein of unknown function (DUF444) 2.3 1.6 1
FdhD-NarQ FdhD/NarQ family 3.1 1.7 1
DUF1481 Protein of unknown function (DUF1481) 2.0 1.8 1
DUF645 Protein of unknown function, DUF645 3.9 1.9 1
Radical_SAM_N Radical SAM N-terminal 1.6 2.2 1
Pkinase_Tyr Protein tyrosine kinase 1.6 2.5 1
Pox_P4A Poxvirus P4A protein -0.5 2.6 1
Pec_lyase_C Pectate lyase 3.3 3 1
RdRP RNA dependent RNA polymerase 1.0 3.3 1
CSE2 RNA polymerase II transcription media 2.7 3.6 1
Hjc Archaeal holliday junction resolvase 3.3 3.9 1
Dopey_N Dopey, N-terminal 0.7 4.4 1
LicD LICD Protein Family 0.9 4.5 1
Mo25 Mo25-like 0.2 5.2 1
DUF1284 Protein of unknown function (DUF1284) 0.8 5.6 1
GerE Bacterial regulatory proteins, luxR f 2.9 6.2 1
BAG BAG domain 2.2 6.3 1
Herpes_UL6 Herpesvirus UL6 like -0.4 6.3 1
SBP_bac_3 Bacterial extracellular solute-bindin 0.5 7 1
mRNA_triPase mRNA capping enzyme, beta chain -0.3 7.5 1
PsbI Photosystem II reaction centre I prot 2.1 7.8 1
DUF1357 Protein of unknown function (DUF1357) 0.1 7.8 1
DUF1479 Protein of unknown function (DUF1479) 0.3 8.3 1
Peptidase_M74 Penicillin-insensitive murein endopep -0.2 8.4 1
Med18 Med18 protein -0.0 8.7 1
DUF2075 Uncharacterized conserved protein (DU 0.5 8.9 1
DUF1802 Domain of unknown function (DUF1802) 0.7 9.1 1
HTH_3 Helix-turn-helix 2.6 9.1 1
Baculo_helicase Baculovirus DNA helicase -2.7 9.1 1
Kelch_1 Kelch motif 2.4 9.4 1
Biliv-reduc_cat Biliverdin reductase, catalytic 1.1 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Dopey_N 1/1 18 31 .. 305 318 .] 0.7 4.4
Kelch_1 1/1 38 55 .. 28 45 .] 2.4 9.4
DUF645 1/1 88 102 .. 1 15 [. 3.9 1.9
PsbI 1/1 113 134 .. 1 24 [. 2.1 7.8
Baculo_helicase 1/1 115 127 .. 1271 1283 .] -2.7 9.1
F-box 1/1 117 164 .. 1 46 [] 28.2 4.8e-07
DUF1284 1/1 155 164 .. 106 115 .] 0.8 5.6
DUF1481 1/1 156 162 .. 218 224 .] 2.0 1.8
GerE 1/1 193 200 .. 1 8 [. 2.9 6.2
Hjc 1/1 222 234 .. 1 13 [. 3.3 3.9
Mo25 1/1 282 295 .. 376 389 .] 0.2 5.2
DUF1802 1/1 296 320 .. 162 186 .] 0.7 9.1
FdhD-NarQ 1/1 326 352 .. 192 217 .. 3.1 1.7
Radical_SAM_N 1/1 337 347 .. 344 354 .] 1.6 2.2
RdRP 1/1 345 352 .. 443 450 .] 1.0 3.3
Peptidase_M74 1/1 381 389 .. 1 9 [. -0.2 8.4
SBP_bac_3 1/1 465 480 .. 205 221 .] 0.5 7
SMI1_KNR4 1/1 487 508 .. 117 142 .] 9.5 0.035
DUF2075 1/1 489 497 .. 277 289 .] 0.5 8.9
IL6 1/1 501 514 .. 141 154 .] 3.4 1.3
Pkinase_Tyr 1/1 518 528 .. 260 270 .] 1.6 2.5
Biliv-reduc_cat 1/1 520 531 .. 1 12 [. 1.1 9.8
HTH_3 1/1 586 608 .. 37 59 .] 2.6 9.1
CSE2 1/1 590 603 .. 79 92 .] 2.7 3.6
RhoGEF 1/1 612 795 .. 1 207 [] 120.8 2.2e-35
mRNA_triPase 1/1 672 682 .. 1 11 [. -0.3 7.5
RPN7 1/1 705 723 .. 85 103 .. 4.0 1.2
DUF444 1/1 724 735 .. 446 457 .] 2.3 1.6
Med18 1/1 745 765 .. 1 24 [. -0.0 8.7
LicD 1/1 753 764 .. 264 275 .] 0.9 4.5
DUF1357 1/1 776 797 .. 202 226 .] 0.1 7.8
DUF1479 1/1 777 788 .. 1 14 [. 0.3 8.3
BAG 1/1 782 814 .. 1 39 [. 2.2 6.3
Pox_P4A 1/1 791 809 .. 1325 1343 .] -0.5 2.6
Pec_lyase_C 1/1 819 825 .. 244 250 .] 3.3 3
Herpes_UL6 1/1 824 837 .. 587 600 .] -0.4 6.3
Alignments of top-scoring domains:
Dopey_N: domain 1 of 1, from 18 to 31: score 0.7, E = 4.4
*->lglskdTelvvsdS<-*
+++ + Te +v dS
gi|1263111 18 MNREISTEMSVRDS 31
Kelch_1: domain 1 of 1, from 38 to 55: score 2.4, E = 9.4
CS EEEEETTTTEEEEETTSS
*->vevYDpetntWtrlpsmp<-*
+e++ ++ tWt++++ +
gi|1263111 38 IECFQTKFSTWTPITNKS 55
DUF645: domain 1 of 1, from 88 to 102: score 3.9, E = 1.9
*->lldvqhgkfgFtkgc<-*
l +h+++ F+kgc
gi|1263111 88 LQNCSHSQLTFVKGC 102
PsbI: domain 1 of 1, from 113 to 134: score 2.1, E = 7.8
*->mltLkifvYavvilFvsLFiFGfL<-*
+ k+ +v+ F+sL+iF fL
gi|1263111 113 --VAKVDFCTVLPRFISLYIFSFL 134
Baculo_helicase: domain 1 of 1, from 115 to 127: score -2.7, E = 9.1
*->kkDFntnvPkFKc<-*
k DF t+ P+F++
gi|1263111 115 KVDFCTVLPRFIS 127
F-box: domain 1 of 1, from 117 to 164: score 28.2, E = 4.8e-07
CS -HHHHS-HHHHHHHHTTS-HHHHHHHTTT-HHHHHHHCT- HHH HH
*->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
+ LP + l I+s+L+p+dl+++++V++ w+ l + lw++k+
gi|1263111 117 DFCTVLPRFISLYIFSFLNPMDLCAAAQVNWPWKFLTEQDcLWRpKC 163
CS H
l<-*
+
gi|1263111 164 I 164
DUF1284: domain 1 of 1, from 155 to 164: score 0.8, E = 5.6
*->ggCeWlelGy<-*
++C W+++++
gi|1263111 155 QDCLWRPKCI 164
DUF1481: domain 1 of 1, from 156 to 162: score 2.0, E = 1.8
*->DCrWqPk<-*
DC W+Pk
gi|1263111 156 DCLWRPK 162
GerE: domain 1 of 1, from 193 to 200: score 2.9, E = 6.2
CS --SS-HHH
*->ldsLspRE<-*
ld+L+pRE
gi|1263111 193 LDWLTPRE 200
Hjc: domain 1 of 1, from 222 to 234: score 3.3, E = 3.9
CS HHHHHHHHHHHHT
*->ryERELvkiLeer<-*
++ER+L+ki ++r
gi|1263111 222 QRERYLRKIIWGR 234
Mo25: domain 1 of 1, from 282 to 295: score 0.2, E = 5.2
*->EKefiikqIesLpp<-*
EK++++ ++e+Lp+
gi|1263111 282 EKQLVLASLEALPK 295
DUF1802: domain 1 of 1, from 296 to 320: score 0.7, E = 9.1
*->nesislaesrPVlsDeeFaqlaqei<-*
++++s + s+PVls++ +++ q+
gi|1263111 296 KKNVSGSHSYPVLSNKHYHRADQKY 320
FdhD-NarQ: domain 1 of 1, from 326 to 352: score 3.1, E = 1.7
*->nlrksfllvSGRiS.semvqKaaraGv<-*
+++ s++l S+Ri+ +emv +++ Gv
gi|1263111 326 SVQTSLVLISSRIPaYEMVVDSVKTGV 352
Radical_SAM_N: domain 1 of 1, from 337 to 347: score 1.6, E = 2.2
*->kIPAyemIKfS<-*
+IPAyem+ S
gi|1263111 337 RIPAYEMVVDS 347
RdRP: domain 1 of 1, from 345 to 352: score 1.0, E = 3.3
*->VDfpKtGv<-*
VD++KtGv
gi|1263111 345 VDSVKTGV 352
Peptidase_M74: domain 1 of 1, from 381 to 389: score -0.2, E = 8.4
*->qSIGsYanG<-*
qSIG ++ G
gi|1263111 381 QSIGIFSDG 389
SBP_bac_3: domain 1 of 1, from 465 to 480: score 0.5, E = 7
RF xxxxxxxxxxxxxxxxx
*->kadGtlakiyeKWgfge<-*
+a G+++ i+ W +g+
gi|1263111 465 IATGSYQHILSDW-LGQ 480
SMI1_KNR4: domain 1 of 1, from 487 to 508: score 9.5, E = 0.035
*->gqvivvfwdhdeivvvAdSFeefLek<-*
+++ +f dh + + + SF+efLe+
gi|1263111 487 PSI--YFCDH--KLQTWHSFTEFLEE 508
DUF2075: domain 1 of 1, from 489 to 497: score 0.5, E = 8.9
*->iYaPpGatDpeLr<-*
iY+ +D++L+
gi|1263111 489 IYF----CDHKLQ 497
IL6: domain 1 of 1, from 501 to 514: score 3.4, E = 1.3
CS HHHHHHHHHHHHHH
*->sLeeFLefslRAlR<-*
s+ eFLe +l ++R
gi|1263111 501 SFTEFLEETLKSVR 514
Pkinase_Tyr: domain 1 of 1, from 518 to 528: score 1.6, E = 2.5
CS S-HHHHHHHHH
*->RPtFselveeL<-*
RP F+el++ +
gi|1263111 518 RPHFKELQRNI 528
Biliv-reduc_cat: domain 1 of 1, from 520 to 531: score 1.1, E = 9.8
*->dFKqLKrEveGK<-*
FK L r ++GK
gi|1263111 520 HFKELQRNISGK 531
HTH_3: domain 1 of 1, from 586 to 608: score 2.6, E = 9.1
CS SSTSBHHHHHHHHHHTTSHHHHH
*->krePsletlkklaeaLgvsldel<-*
+ ++ le+l+kl++ L+ +l+e
gi|1263111 586 EDDLKLEVLVKLERKLQMDLAEK 608
CSE2: domain 1 of 1, from 590 to 603: score 2.7, E = 3.6
CS HHHHHHHHHHHHHT
*->KedlLqkldkkLer<-*
K ++L+kl +kL++
gi|1263111 590 KLEVLVKLERKLQM 603
RhoGEF: domain 1 of 1, from 612 to 795: score 120.8, E = 2.2e-35
*->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
++ Ell +E+kY++ Lei+++vy p+++a +s +++L++ di++iF
gi|1263111 612 IAGELLKSERKYIQMLEIVRDVYVTPMKAALASNRAILSSTDIQIIF 658
sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk
s+i ++++++FL+ +L++r++++ +aq+lG +F ++
gi|1263111 659 SDILCVLDLNKHFLD-ELTKRLQEW-----------GPAQCLGEIFTKF- 695
aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd
+l+ Y+ + +n+p++ +++ek +++ +p+F+ fl++ + t
gi|1263111 696 GLQLKTYTNFFNNYPVVLKTIEK--CREMIPAFRAFLKRQDKTIVTR--- 740
davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda
+Lq LLl+P R Y LL L +htp+ ++ ++edL a+++
gi|1263111 741 ---MMSLQELLLYPSRRFEEYLNLLYGLRLHTPS--EHGDREDLTTAIKQ 785
lqdlaksiNe<-*
+++ + +iN+
gi|1263111 786 IKRYIGYINQ 795
mRNA_triPase: domain 1 of 1, from 672 to 682: score -0.3, E = 7.5
CS --HHHHHHHHH
*->pdsftksvadw<-*
+d++tk++++w
gi|1263111 672 LDELTKRLQEW 682
RPN7: domain 1 of 1, from 705 to 723: score 4.0, E = 1.2
*->ffnDwdlVskyiekAksli<-*
ffn++++V+k iek++++i
gi|1263111 705 FFNNYPVVLKTIEKCREMI 723
DUF444: domain 1 of 1, from 724 to 735: score 2.3, E = 1.6
*->pVfrelFqkeea<-*
p+fr +++++++
gi|1263111 724 PAFRAFLKRQDK 735
Med18: domain 1 of 1, from 745 to 765: score -0.0, E = 8.7
*->qELlLygsVpdhslelllhrLagL<-*
qELlLy p++++e+ l+ L gL
gi|1263111 745 QELLLY---PSRRFEEYLNLLYGL 765
LicD: domain 1 of 1, from 753 to 764: score 0.9, E = 4.5
*->nnydeyLtreYG<-*
++++eyL+ +YG
gi|1263111 753 RRFEEYLNLLYG 764
DUF1357: domain 1 of 1, from 776 to 797: score 0.1, E = 7.8
*->fteLrkAmlNeweelkiqF.YcNkkk<-*
+ +L+ A+ +++k+ +Y+N++k
gi|1263111 776 REDLTTAI----KQIKRYIgYINQLK 797
DUF1479: domain 1 of 1, from 777 to 788: score 0.3, E = 8.3
*->dpLPDKsrfaelKq<-*
++L+ +++++K+
gi|1263111 777 EDLT--TAIKQIKR 788
BAG: domain 1 of 1, from 782 to 814: score 2.2, E = 6.3
CS HHHHHHHHHHHHC..CHHCHHHHHH..HHCCCCCHHHHH
*->siakinevlgeVlKlvrkieqevqssdadgkkddkeylr<-*
+i+ i +++g + + ++q+v++ d+ +d ++ +
gi|1263111 782 AIKQIKRYIGYI----NQLKQNVNR--KDQLSDVERSIC 814
Pox_P4A: domain 1 of 1, from 791 to 809: score -0.5, E = 2.6
*->pYFnsmKKNLNmnDgsavS<-*
+Y n++K N N++D ++
gi|1263111 791 GYINQLKQNVNRKDQLSDV 809
Pec_lyase_C: domain 1 of 1, from 819 to 825: score 3.3, E = 3
CS EEES-EE
*->LSEgNsF<-*
LSEgN+F
gi|1263111 819 LSEGNRF 825
Herpes_UL6: domain 1 of 1, from 824 to 837: score -0.4, E = 6.3
*->RLevYitdIgakyc<-*
R+++ ++d+++++c
gi|1263111 824 RFLIRVQDVAQLFC 837
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