hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 134097931.fa
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Query sequence: gi|134097931|ref|YP_001103592.1|
Accession: [none]
Description: PE-PGRS family protein [Saccharopolyspora erythraea NRRL 2338]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Tim17 Tim17/Tim22/Tim23 family 6.9 0.23 1
DUF1205 Protein of unknown function (DUF1205) 4.6 0.29 1
CbiC Precorrin-8X methylmutase 4.9 0.49 1
NUDE_C NUDE protein, C-terminal conserved re 2.8 0.75 1
Remorin_C Remorin, C-terminal region 4.4 1.2 1
Ca_chan_IQ Voltage gated calcium channel IQ doma 4.8 1.8 1
C6 C6 domain 3.5 1.9 1
THF_DHG_CYH Tetrahydrofolate dehydrogenase/cycloh 1.9 2 1
DUF637 Possible hemagglutinin (DUF637) 3.7 2.4 2
CHAD CHAD domain 2.8 2.4 1
SAND SAND domain 3.4 2.6 1
BAR BAR domain 2.3 2.7 1
FUN14 FUN14 family 2.0 4.4 1
adh_short short chain dehydrogenase 1.6 5.8 1
DUF1313 Protein of unknown function (DUF1313) 2.3 5.8 1
DUF1438 Protein of unknown function (DUF1438) -0.0 5.8 1
NLE NLE (NUC135) domain 2.5 6.8 1
Tir_receptor_M Translocated intimin receptor (Tir) i 1.3 7.2 1
DUF1045 Protein of unknown function (DUF1045) 0.4 7.3 1
Ribosomal_L2_C Ribosomal Proteins L2, C-terminal dom 1.7 7.8 1
Clp_N Clp amino terminal domain 2.5 7.9 1
TRCF TRCF domain 1.5 8.1 1
FF FF domain 3.4 8.7 1
LigA Aromatic-ring-opening dioxygenase Lig 1.9 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TRCF 1/1 4 16 .. 48 60 .. 1.5 8.1
CHAD 1/1 21 40 .. 256 275 .] 2.8 2.4
DUF1045 1/1 22 35 .. 51 65 .. 0.4 7.3
adh_short 1/1 24 46 .. 68 91 .. 1.6 5.8
LigA 1/1 53 75 .. 67 90 .] 1.9 9.9
BAR 1/1 62 100 .. 90 132 .. 2.3 2.7
Clp_N 1/1 91 107 .. 1 17 [. 2.5 7.9
DUF637 1/2 196 208 .. 170 182 .] 1.6 8.4
Tim17 1/1 202 223 .. 120 141 .] 6.9 0.23
Tir_receptor_M 1/1 260 279 .. 1 22 [. 1.3 7.2
DUF637 2/2 306 317 .. 171 182 .] 2.1 6.2
FUN14 1/1 307 319 .. 1 13 [. 2.0 4.4
Ribosomal_L2_C 1/1 538 555 .. 116 136 .] 1.7 7.8
NUDE_C 1/1 1053 1068 .. 202 217 .] 2.8 0.75
SAND 1/1 1152 1167 .. 38 54 .. 3.4 2.6
DUF1313 1/1 1254 1267 .. 76 89 .] 2.3 5.8
THF_DHG_CYH 1/1 1320 1338 .. 1 19 [. 1.9 2
DUF1438 1/1 1363 1375 .. 139 151 .] -0.0 5.8
CbiC 1/1 1377 1388 .. 213 224 .] 4.9 0.49
NLE 1/1 1427 1441 .. 56 70 .] 2.5 6.8
Remorin_C 1/1 1481 1506 .. 86 120 .] 4.4 1.2
FF 1/1 1521 1538 .. 1 18 [. 3.4 8.7
C6 1/1 1552 1568 .. 1 19 [. 3.5 1.9
DUF1205 1/1 1564 1570 .. 105 111 .] 4.6 0.29
Ca_chan_IQ 1/1 1624 1638 .] 20 35 .] 4.8 1.8
Alignments of top-scoring domains:
TRCF: domain 1 of 1, from 4 to 16: score 1.5, E = 8.1
*->elPdevknLlaia<-*
e+Pdevk+L+ i+
gi|1340979 4 EMPDEVKWLFPIV 16
CHAD: domain 1 of 1, from 21 to 40: score 2.8, E = 2.4
*->llaareaarrrlaraalall<-*
+ ++e+a+rrla+a++a++
gi|1340979 21 WPEGDEDALRRLADAWRAAG 40
DUF1045: domain 1 of 1, from 22 to 35: score 0.4, E = 7.3
*->PagpsGpaLqaLAAa<-*
P+g++ +aL++LA+a
gi|1340979 22 PEGDE-DALRRLADA 35
adh_short: domain 1 of 1, from 24 to 46: score 1.6, E = 5.8
CS THHHHHHHHHHHHH.HHTSCCCEE
*->aDrdalaallaaipkaaegPLtgV<-*
+D dal++l +a + aa++ L+gV
gi|1340979 24 GDEDALRRLADAWR-AAGQGLDGV 46
LigA: domain 1 of 1, from 53 to 75: score 1.9, E = 9.9
CS -HHHHHHHTTT.S-HHHHHHHHHT
*->snqdiyaamtGfmSveeFqamrna<-*
+ q++ +am G + ++F +m ++
gi|1340979 53 GAQQVKSAMEG-KTADAFEKMWKD 75
BAR: domain 1 of 1, from 62 to 100: score 2.3, E = 2.7
*->eglLaetmieageelgddsedPfGkaLekygeamkqlaqlleq<-*
eg a+++ ++ +++g++ e aL k++ea+++la+ +++
gi|1340979 62 EGKTADAFEKMWKDIGEGGE----AALPKLKEACDKLAESCDN 100
Clp_N: domain 1 of 1, from 91 to 107: score 2.5, E = 7.9
CS HHHHHHHTTBSEE-HHH
*->AqelAkelghqyigtEH<-*
+++lA + +++ +++EH
gi|1340979 91 CDKLAESCDNSALEVEH 107
DUF637: domain 1 of 2, from 196 to 208: score 1.6, E = 8.4
*->GGDfrtGAlAAGa<-*
GG+f++ A+ ++
gi|1340979 196 GGKFKDAAISGAI 208
Tim17: domain 1 of 1, from 202 to 223: score 6.9, E = 0.23
*->avvsaatgaalsaaiegvgrtf<-*
a++s+a+g++ +a+egvg++
gi|1340979 202 AAISGAIGGVVGGAFEGVGKVA 223
Tir_receptor_M: domain 1 of 1, from 260 to 279: score 1.3, E = 7.2
CS X-SHHHHHHHHHHHHHHHHHHT
*->PDaAAnaAEaAaKDqLtkEAFk<-*
DaAA a E+ aK + kEA k
gi|1340979 260 -DAAAAASESVAKN-IGKEALK 279
DUF637: domain 2 of 2, from 306 to 317: score 2.1, E = 6.2
*->GDfrtGAlAAGa<-*
GD+ tGA+ +G+
gi|1340979 306 GDVGTGAMSGGV 317
FUN14: domain 1 of 1, from 307 to 319: score 2.0, E = 4.4
*->QlgiGalsGwaaG<-*
++g Ga sG ++G
gi|1340979 307 DVGTGAMSGGVTG 319
Ribosomal_L2_C: domain 1 of 1, from 538 to 555: score 1.7, E = 7.8
*->GGGEGrtsgGRppPvsPWGkp<-*
GG r+sgG p+P+sP G
gi|1340979 538 GG---RASGGDPTPTSPGGDS 555
NUDE_C: domain 1 of 1, from 1053 to 1068: score 2.8, E = 0.75
*->dgarPerfqahSRakS<-*
dg rP+ +q SR+k
gi|1340979 1053 DGTRPDQNQPDSRPKD 1068
SAND: domain 1 of 1, from 1152 to 1167: score 3.4, E = 2.6
CS EEETTTEEE-HHHHHHH
*->IqyedGkwlTPkeFEie<-*
++++d + +TPkeF ++
gi|1340979 1152 VRVGD-QTFTPKEFADM 1167
DUF1313: domain 1 of 1, from 1254 to 1267: score 2.3, E = 5.8
*->smdasseGdssgga<-*
+++ s++G++sg
gi|1340979 1254 GFHPSRDGEDSGDQ 1267
THF_DHG_CYH: domain 1 of 1, from 1320 to 1338: score 1.9, E = 2
CS EE-HHHHHHHHHHHHHHHH
*->qIidGkalAqeiraelane<-*
q+idGk++ + +r+ + ++
gi|1340979 1320 QTIDGKPVDKYVRTSIEDR 1338
DUF1438: domain 1 of 1, from 1363 to 1375: score -0.0, E = 5.8
*->DqDpasdsarhLG<-*
D+D +++s +++G
gi|1340979 1363 DKDGVAYSKKSMG 1375
CbiC: domain 1 of 1, from 1377 to 1388: score 4.9, E = 0.49
*->AAivNALielak<-*
A++vNAL++++
gi|1340979 1377 AGAVNALVMDRR 1388
NLE: domain 1 of 1, from 1427 to 1441: score 2.5, E = 6.8
*->LvdgeelRtsLedyL<-*
L +++l+ +L+d++
gi|1340979 1427 LTKDDLLHRQLQDHI 1441
Remorin_C: domain 1 of 1, from 1481 to 1506: score 4.4, E = 1.2
*->krgeeelKaeEkAakivKitHLvRRaTGklPkkss<-*
kr+ee++ aeEkAa + G++P ++
gi|1340979 1481 KRREEIAAAEEKAAAT---------REGRAPQNIE 1506
FF: domain 1 of 1, from 1521 to 1538: score 3.4, E = 8.7
CS HHHHHHHHHHHHTT--TT
*->kakeaFreLLkehkvity<-*
k +++F+++L++ v+++
gi|1340979 1521 KSEAEFQKVLDDLYVDAR 1538
C6: domain 1 of 1, from 1552 to 1568: score 3.5, E = 1.9
*->CtsCtnlpitsvsggdLvN<-*
C++C++ + + s +d N
gi|1340979 1552 CANCARIVSGPASLPD--N 1568
DUF1205: domain 1 of 1, from 1564 to 1570: score 4.6, E = 0.29
*->eLPdNVR<-*
+LPdNVR
gi|1340979 1564 SLPDNVR 1570
Ca_chan_IQ: domain 1 of 1, from 1624 to 1638: score 4.8, E = 1.8
*->RkFkkRKeeekkgkep<-*
RkFk+R+e++ +g+ +
gi|1340979 1624 RKFKERQEQN-QGSTN 1638
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