hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 134099160.fa
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Query sequence: gi|134099160|ref|YP_001104821.1|
Accession: [none]
Description: hypothetical protein SACE_2610 [Saccharopolyspora erythraea NRRL 2338]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HTH_3 Helix-turn-helix 33.7 2.3e-08 2
NNMT_PNMT_TEMT NNMT/PNMT/TEMT family 6.2 0.091 1
Toprim Toprim domain 8.5 0.097 1
DUF1612 Protein of unknown function (DUF1612) 2.6 0.11 1
NuiA Nuclease A inhibitor-like protein 5.4 0.21 1
FARP FMRFamide related peptide family 6.2 0.38 2
DUF1908 Domain of unknown function (DUF1908) 3.1 0.48 1
YcfA YcfA-like protein 7.0 0.53 2
RNase_H2-Ydr279 Ydr279p protein family (RNase H2 comp 3.1 0.55 1
ATP-grasp_2 ATP-grasp domain 3.2 0.56 1
Albicidin_res Albicidin resistance domain 4.1 0.97 1
DUF1205 Protein of unknown function (DUF1205) 2.9 1.1 1
TMP-TENI Thiamine monophosphate synthase/TENI 3.1 1.5 1
NatB_MDM20 N-acetyltransferase B complex (NatB) 3.4 1.6 1
DUF2220 Uncharacterized protein conserved in 1.7 1.8 1
VacA2 Putative vacuolating cytotoxin 4.0 2 1
Peptidase_C36 Beet necrotic yellow vein furovirus-t 2.0 2.1 1
ParG ParG 2.9 2.2 1
Moricin Moricin 2.9 2.2 1
ChiC Chitinase C 2.3 2.2 1
FAD_binding_3 FAD binding domain 1.3 2.4 1
Prothymosin Prothymosin/parathymosin family 2.5 2.5 1
NifW Nitrogen fixation protein NifW 3.1 2.7 1
SBDS_C SBDS protein C-terminal domain 3.6 2.7 1
Crp Bacterial regulatory proteins, crp fa 4.4 2.8 1
DAP_C D-aminopeptidase, domain C 2.2 3.1 1
SoxG Sarcosine oxidase, gamma subunit fami 2.2 3.4 1
TFIIA_gamma_C Transcription initiation factor IIA, 4.5 3.6 1
SecIII_SopE_N Salmonella type III secretion SopE ef 1.6 3.6 1
DUF1117 Protein of unknown function (DUF1117) 2.1 3.6 1
Gmad1 Lipoprotein LpqB beta-propeller domai 1.7 3.6 1
TMP_2 Prophage tail length tape measure pro 1.7 3.8 1
Focal_AT Focal adhesion targeting region 1.6 3.8 1
DUF678 Protein of unknown function (DUF678) 2.3 4.1 1
YaeQ YaeQ protein 1.3 4.1 1
AP2 AP2 domain 3.3 4.2 1
Urm1 Urm1 (Ubiquitin related modifier) -1.1 4.2 1
UPF0060 Uncharacterised BCR, YnfA/UPF0060 fam 0.2 4.4 1
zf-dskA_traR Prokaryotic dksA/traR C4-type zinc fi 2.3 4.5 1
SH3_4 Bacterial SH3 domain 2.5 4.7 1
BDHCT BDHCT (NUC031) domain 1.3 4.9 1
HDPD Bacteriophage lambda head decoration 0.9 4.9 1
HCV_NS5a_1b Hepatitis C virus non-structural 5a d 3.0 4.9 1
GcrA GcrA cell cycle regulator 1.2 5 1
UPF0227 Uncharacterised protein family (UPF02 1.4 5.1 1
CNP1 CNP1-like family 1.6 5.5 1
Aegerolysin Aegerolysin 1.8 5.6 1
RFX1_trans_act RFX1 transcription activation region 1.1 5.9 1
Herpes_UL56 Herpesvirus UL56 protein -0.1 5.9 1
Phage_CI_repr Bacteriophage CI repressor helix-turn 2.1 6 1
Plectin Plectin repeat 2.9 6.2 1
Bombinin Bombinin 1.5 6.3 1
NEAT Iron Transport-associated domain 2.0 6.3 1
COX4_pro Prokaryotic Cytochrome C oxidase subu 1.7 6.7 1
EutA Ethanolamine utilisation protein EutA -0.4 6.7 1
SMC_hinge SMC proteins Flexible Hinge Domain 1.6 6.7 1
Rad4 Rad4 transglutaminase-like domain 2.1 6.8 1
Hydant_A_N Hydantoinase/oxoprolinase N-terminal 1.2 7 1
RBM1CTR RBM1CTR (NUC064) family 2.8 7 1
DUF642 Protein of unknown function, DUF642 -0.9 7.4 1
DUF2254 Predicted membrane protein (DUF2254) 0.4 7.5 1
MOZ_SAS MOZ/SAS family 1.0 7.7 1
DUF296 Domain of unknown function (DUF296) 1.5 7.8 1
Mucin Mucin-like glycoprotein 0.5 7.9 1
Drf_FH3 Diaphanous FH3 Domain -0.0 7.9 1
DUF1356 Protein of unknown function (DUF1356) -1.1 8 1
SRP40_C SRP40, C-terminal domain 0.6 8 1
AAR2 AAR2 protein 0.1 8.2 1
GH3 GH3 auxin-responsive promoter -1.2 8.2 1
DUF2486 Protein of unknown function (DUF2486) -0.2 8.4 1
Peptidase_M16_C Peptidase M16 inactive domain 1.0 8.5 1
Terminase_GpA Phage terminase large subunit (GpA) -1.4 8.7 1
DUF390 Protein of unknown function (DUF390) -3.5 8.9 1
PP2C Protein phosphatase 2C 0.2 8.9 1
HupE_UreJ HupE / UreJ protein 0.5 9.2 1
Spore_GerQ Spore coat protein (Spore_GerQ) 0.6 9.2 1
Flu_PB1 Influenza RNA-dependent RNA polymeras -1.5 9.3 1
DUF533 Protein of unknown function (DUF533) 0.4 9.4 1
BALF1 BALF1 protein 0.1 9.4 1
DNA_pol_delta_4 DNA polymerase delta, subunit 4 0.3 9.5 1
PaaB Phenylacetic acid degradation B 0.3 9.7 1
PD40 WD40-like Beta Propeller Repeat 1.5 9.7 1
PRP1_N PRP1 splicing factor, N-terminal 0.4 9.9 1
IGF2_C Insulin-like growth factor II E-pepti 1.2 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
COX4_pro 1/1 30 37 .. 80 87 .] 1.7 6.7
TMP-TENI 1/1 64 81 .. 177 194 .] 3.1 1.5
AP2 1/1 96 108 .. 55 67 .] 3.3 4.2
DUF1356 1/1 124 138 .. 147 161 .. -1.1 8
HupE_UreJ 1/1 189 203 .. 170 184 .] 0.5 9.2
RNase_H2-Ydr279 1/1 226 242 .. 400 416 .] 3.1 0.55
UPF0227 1/1 285 322 .. 38 81 .. 1.4 5.1
Moricin 1/1 288 306 .. 1 20 [. 2.9 2.2
RFX1_trans_act 1/1 625 640 .. 150 168 .] 1.1 5.9
Bombinin 1/1 628 643 .. 126 141 .] 1.5 6.3
Plectin 1/1 638 647 .. 10 19 .. 2.9 6.2
Urm1 1/1 695 699 .. 109 113 .] -1.1 4.2
ChiC 1/1 752 766 .. 180 195 .] 2.3 2.2
Terminase_GpA 1/1 755 768 .. 1 12 [. -1.4 8.7
GcrA 1/1 767 782 .. 17 36 .. 1.2 5
ATP-grasp_2 1/1 799 821 .. 21 44 .. 3.2 0.56
AAR2 1/1 803 811 .. 1 9 [. 0.1 8.2
UPF0060 1/1 819 827 .. 101 109 .] 0.2 4.4
DUF2220 1/1 970 994 .. 1 27 [. 1.7 1.8
SH3_4 1/1 975 983 .. 49 57 .] 2.5 4.7
DUF2486 1/1 984 996 .. 265 277 .] -0.2 8.4
TFIIA_gamma_C 1/1 1002 1009 .. 57 64 .] 4.5 3.6
HCV_NS5a_1b 1/1 1057 1068 .. 1 12 [. 3.0 4.9
PD40 1/1 1058 1084 .. 9 41 .] 1.5 9.7
DUF1205 1/1 1092 1108 .. 90 106 .. 2.9 1.1
SBDS_C 1/1 1092 1112 .. 119 139 .] 3.6 2.7
DUF1612 1/1 1102 1110 .. 1 9 [. 2.6 0.11
Mucin 1/1 1108 1123 .. 136 151 .] 0.5 7.9
MOZ_SAS 1/1 1172 1191 .. 174 193 .] 1.0 7.7
HTH_3 1/2 1173 1224 .. 1 59 [] 13.9 0.0069
YcfA 1/2 1207 1226 .. 1 20 [. 1.6 16
Drf_FH3 1/1 1208 1273 .. 95 179 .. -0.0 7.9
Phage_CI_repr 1/1 1208 1220 .. 1 13 [. 2.1 6
Rad4 1/1 1210 1237 .. 150 181 .. 2.1 6.8
FAD_binding_3 1/1 1211 1232 .. 360 381 .] 1.3 2.4
BDHCT 1/1 1221 1228 .. 34 41 .] 1.3 4.9
DUF678 1/1 1244 1254 .. 75 85 .] 2.3 4.1
HTH_3 2/2 1247 1299 .. 1 59 [] 19.8 0.00016
Herpes_UL56 1/1 1334 1353 .. 194 213 .] -0.1 5.9
CNP1 1/1 1376 1394 .. 106 128 .. 1.6 5.5
DAP_C 1/1 1384 1392 .. 89 97 .] 2.2 3.1
Albicidin_res 1/1 1395 1404 .. 1 10 [. 4.1 0.97
Focal_AT 1/1 1535 1551 .. 122 139 .] 1.6 3.8
FARP 1/2 1544 1554 .. 1 11 [] 4.0 2.2
Spore_GerQ 1/1 1579 1595 .. 39 55 .. 0.6 9.2
IGF2_C 1/1 1744 1753 .. 48 57 .] 1.2 10
NifW 1/1 1785 1807 .. 51 76 .. 3.1 2.7
DUF390 1/1 1788 1813 .. 818 843 .] -3.5 8.9
Toprim 1/1 1791 1820 .. 117 150 .] 8.5 0.097
YcfA 2/2 1797 1808 .. 1 12 [. 5.3 1.5
ParG 1/1 1811 1830 .. 57 76 .] 2.9 2.2
SRP40_C 1/1 1884 1911 .. 1 28 [. 0.6 8
RBM1CTR 1/1 1905 1918 .. 25 38 .. 2.8 7
NNMT_PNMT_TEMT 1/1 2022 2034 .. 101 113 .. 6.2 0.091
PaaB 1/1 2048 2072 .. 66 90 .] 0.3 9.7
Flu_PB1 1/1 2185 2200 .. 757 772 .] -1.5 9.3
Gmad1 1/1 2211 2228 .. 280 297 .] 1.7 3.6
SMC_hinge 1/1 2214 2228 .. 1 14 [. 1.6 6.7
SoxG 1/1 2238 2248 .. 150 160 .] 2.2 3.4
DUF1117 1/1 2246 2253 .. 1 8 [. 2.1 3.6
Hydant_A_N 1/1 2293 2302 .. 206 215 .] 1.2 7
DUF642 1/1 2366 2382 .. 236 252 .. -0.9 7.4
DUF296 1/1 2428 2442 .. 110 124 .. 1.5 7.8
PP2C 1/1 2464 2484 .. 1 21 [. 0.2 8.9
BALF1 1/1 2477 2492 .. 83 98 .. 0.1 9.4
DUF533 1/1 2506 2520 .. 1 17 [. 0.4 9.4
HDPD 1/1 2509 2519 .. 84 94 .] 0.9 4.9
Crp 1/1 2603 2615 .. 21 33 .] 4.4 2.8
VacA2 1/1 2631 2643 .. 51 63 .] 4.0 2
FARP 2/2 2640 2650 .. 1 11 [] 2.2 9
SecIII_SopE_N 1/1 2733 2738 .. 69 74 .] 1.6 3.6
YaeQ 1/1 2830 2846 .. 160 176 .] 1.3 4.1
DUF2254 1/1 2844 2857 .. 363 376 .] 0.4 7.5
Peptidase_M16_C 1/1 2844 2873 .. 167 198 .] 1.0 8.5
TMP_2 1/1 2868 2884 .. 22 38 .. 1.7 3.8
PRP1_N 1/1 2869 2877 .. 132 140 .. 0.4 9.9
DNA_pol_delta_4 1/1 2885 2900 .. 1 16 [. 0.3 9.5
Aegerolysin 1/1 2921 2942 .. 119 140 .] 1.8 5.6
Peptidase_C36 1/1 2933 2952 .. 87 104 .] 2.0 2.1
DUF1908 1/1 2968 3002 .. 316 351 .. 3.1 0.48
NatB_MDM20 1/1 2993 3027 .. 409 449 .] 3.4 1.6
NEAT 1/1 3004 3024 .. 70 91 .. 2.0 6.3
NuiA 1/1 3005 3012 .. 127 134 .] 5.4 0.21
GH3 1/1 3099 3124 .. 1 26 [. -1.2 8.2
zf-dskA_traR 1/1 3104 3125 .. 1 22 [. 2.3 4.5
EutA 1/1 3190 3195 .. 481 486 .] -0.4 6.7
Prothymosin 1/1 3208 3227 .. 1 21 [. 2.5 2.5
Alignments of top-scoring domains:
COX4_pro: domain 1 of 1, from 30 to 37: score 1.7, E = 6.7
*->vvvGSlWi<-*
vvvGS+++
gi|1340991 30 VVVGSIMV 37
TMP-TENI: domain 1 of 1, from 64 to 81: score 3.1, E = 1.5
*->vpevleaGadGvAVvSAI<-*
v+e+leaGa GvA vS +
gi|1340991 64 VAELLEAGAVGVAEVSPV 81
AP2: domain 1 of 1, from 96 to 108: score 3.3, E = 4.2
*->raaiearlklrge<-*
+aa++++++l+g
gi|1340991 96 KAADRFAERLEGF 108
DUF1356: domain 1 of 1, from 124 to 138: score -1.1, E = 8
*->VeVtqLtaqVqylkt<-*
V V +L +qVqylk+
gi|1340991 124 VKVRELALQVQYLKL 138
HupE_UreJ: domain 1 of 1, from 189 to 203: score 0.5, E = 9.2
*->vRLaGlglalaGvgL<-*
vRLa + +a++Gv L
gi|1340991 189 VRLAMAQVAGIGVQL 203
RNase_H2-Ydr279: domain 1 of 1, from 226 to 242: score 3.1, E = 0.55
*->kkkkkvakGmkkIssFF<-*
+k++++a+G +++s+ F
gi|1340991 226 EKATVDAVGVGAMSGLF 242
UPF0227: domain 1 of 1, from 285 to 322: score 1.4, E = 5.1
*->hlphdpqqalkelekavaelgddnsepplLvGSSLGGYyAtwLg<-*
h+ +p a+++ av e+ d++ G SLGG +A++ g
gi|1340991 285 HAQKYPISAMARFADAVGESLRDYG------GMSLGGMWAARVG 322
Moricin: domain 1 of 1, from 288 to 306: score 2.9, E = 2.2
*->aKiPikAiKkvGKAvGKGLR<-*
K Pi A+ + AvG LR
gi|1340991 288 -KYPISAMARFADAVGESLR 306
RFX1_trans_act: domain 1 of 1, from 625 to 640: score 1.1, E = 5.9
*->VsGSqvVsSSgsTYliass<-*
V G++vVsS+gs ++
gi|1340991 625 VDGGPVVSSAGS---RTGG 640
Bombinin: domain 1 of 1, from 628 to 643: score 1.5, E = 6.3
*->GPvlslvGsaLGGLiK<-*
GPv+s Gs GG++
gi|1340991 628 GPVVSSAGSRTGGVVD 643
Plectin: domain 1 of 1, from 638 to 647: score 2.9, E = 6.2
CS TTSEEECCCT
*->TGGliDPvtg<-*
TGG++DP+t+
gi|1340991 638 TGGVVDPATN 647
Urm1: domain 1 of 1, from 695 to 699: score -1.1, E = 4.2
CS -----
*->TLHGG<-*
T+HGG
gi|1340991 695 TVHGG 699
ChiC: domain 1 of 1, from 752 to 766: score 2.3, E = 2.2
*->PrgvalvdataGtGPG<-*
+r v ++++t+G G +
gi|1340991 752 ARVVRVPEPTTGAG-T 766
Terminase_GpA: domain 1 of 1, from 755 to 768: score -1.4, E = 8.7
*->mlvPr..tgAaepG<-*
++vP+++tgA+++G
gi|1340991 755 VRVPEptTGAGTEG 768
GcrA: domain 1 of 1, from 767 to 782: score 1.2, E = 5
*->eGLSASQIAaQLGARFGtGV<-*
eG SA Q+ aQLG tGV
gi|1340991 767 EGVSAEQVRAQLG----TGV 782
ATP-grasp_2: domain 1 of 1, from 799 to 821: score 3.2, E = 0.56
CS EEEESSHHHHHHHHHHHT-SSEEE
*->GeVAfspEeAeeiAkkLGgkvlVV<-*
G+V+ spE+A A++L +v VV
gi|1340991 799 GGVVMSPEQATALARDLKSDV-VV 821
AAR2: domain 1 of 1, from 803 to 811: score 0.1, E = 8.2
*->MDPElAreL<-*
M+PE+A++L
gi|1340991 803 MSPEQATAL 811
UPF0060: domain 1 of 1, from 819 to 827: score 0.2, E = 4.4
*->VImyApGRg<-*
V++ ApGRg
gi|1340991 819 VVVLAPGRG 827
DUF2220: domain 1 of 1, from 970 to 994: score 1.7, E = 1.8
*->qvrrlWdshrgslLaalltgealfPlr<-*
r +W g lL+++++++al+ +r
gi|1340991 970 SARGRWI--EGRLLSGEALDAALAARR 994
SH3_4: domain 1 of 1, from 975 to 983: score 2.5, E = 4.7
*->WiyqslLwG<-*
Wi+ +lL+G
gi|1340991 975 WIEGRLLSG 983
DUF2486: domain 1 of 1, from 984 to 996: score -0.2, E = 8.4
*->eAVdEEiARRaag<-*
eA d+++A R++g
gi|1340991 984 EALDAALAARRGG 996
TFIIA_gamma_C: domain 1 of 1, from 1002 to 1009: score 4.5, E = 3.6
CS EEEEEEES
*->vrIVACds<-*
+r VACds
gi|1340991 1002 LRLVACDS 1009
HCV_NS5a_1b: domain 1 of 1, from 1057 to 1068: score 3.0, E = 4.9
*->GgAvPlpapngK<-*
G+++P+++png+
gi|1340991 1057 GSGRPVLPPNGG 1068
PD40: domain 1 of 1, from 1058 to 1084: score 1.5, E = 9.7
*->eggPtwSPDGktivFssnrgdgddgsGsfdiyv<-*
+g P++ P+G + F+ ++ + +d+
gi|1340991 1058 SGRPVLPPNGGYVLFVPGKP------EPYDLGS 1084
DUF1205: domain 1 of 1, from 1092 to 1108: score 2.9, E = 1.1
*->EvVaTldaeqreeLgeL<-*
EvVa++da++ ++L eL
gi|1340991 1092 EVVAAVDAGDMARLDEL 1108
SBDS_C: domain 1 of 1, from 1092 to 1112: score 3.6, E = 2.7
*->elvvliePglfreldelvkke<-*
e+v+ +++g +ldel+ ++
gi|1340991 1092 EVVAAVDAGDMARLDELIANA 1112
DUF1612: domain 1 of 1, from 1102 to 1110: score 2.6, E = 0.11
*->LARLDERia<-*
+ARLDE ia
gi|1340991 1102 MARLDELIA 1110
Mucin: domain 1 of 1, from 1108 to 1123: score 0.5, E = 7.9
*->LLLlvsAlvyTAGaag<-*
L+ + A + TAGa+g
gi|1340991 1108 LIANAEATAITAGAVG 1123
MOZ_SAS: domain 1 of 1, from 1172 to 1191: score 1.0, E = 7.7
CS HHHHHT-EEEETTEEEEE--
*->TLqsLnmikyykgqhiiclq<-*
TL+ L+++ky k+ ++ ++
gi|1340991 1172 TLKRLRLAKYKKQGSVQGVS 1191
HTH_3: domain 1 of 2, from 1173 to 1224: score 13.9, E = 0.0069
CS HHHHHH.HHTT-HHHHHHHHTT.TSHHHHHHHHHTTSSTSBHHHHHH
*->lkelRkkkelglsqeeLAeklGskvsrstiskiEnGkrePsletlkk
lk+lR+ ++ q G vsr+ s iE+G++ Ps+e l++
gi|1340991 1173 LKRLRL--AKYKKQ---GSVQG--VSRNLASGIETGRAFPSAEELER 1212
CS HHHHTTSHHHHH
laeaLgvsldel<-*
l++a+g + ++
gi|1340991 1213 LLDAYGAKREDR 1224
YcfA: domain 1 of 2, from 1207 to 1226: score 1.6, E = 16
*->arelikaLkklGfyevrrqk<-*
a el+++L ++G ++++r k
gi|1340991 1207 AEELERLLDAYGAKREDRRK 1226
Drf_FH3: domain 1 of 1, from 1208 to 1273: score -0.0, E = 7.9
CS HHHHHHHHHHHHH....HH............HHHHHHHHHHHHHH..
*->dkLddqIklFeenmidvrellddantktkvledleeleerleelkes
++L+ ++++ + re + +k+le ++ +ee l+
gi|1340991 1208 EELERLLDAYGAK----RE------DRRKLLESRDGMEEALKR---- 1240
CS .....HHSSSHHHHHHHHHHHCTTSTCHHHHHHHHHHH
faetsveldslssvaellsnllkltgaedlllSilQhl<-*
++l s+++++ l+++++ +a +++S+l ++
gi|1340991 1241 -----ADLGSTLKMLRGLTAKIDVEKATGVFISTLRDI 1273
Phage_CI_repr: domain 1 of 1, from 1208 to 1220: score 2.1, E = 6
*->avieRlmkAyGfk<-*
+ +eRl +AyG+k
gi|1340991 1208 EELERLLDAYGAK 1220
Rad4: domain 1 of 1, from 1210 to 1237: score 2.1, E = 6.8
*->wDRESesvlrpfrrpktersslitarDdlEda<-*
+ e++l+ + +++ +r++l+++rD +E+a
gi|1340991 1210 L----ERLLDAYGAKREDRRKLLESRDGMEEA 1237
FAD_binding_3: domain 1 of 1, from 1211 to 1232: score 1.3, E = 2.4
CS GGGHHHHHHHHHHHHHHHHHHH
*->eaLLDTYeaERrpvaqavvdra<-*
e+LLD+Y a+R ++ + ++ r+
gi|1340991 1211 ERLLDAYGAKREDRRKLLESRD 1232
BDHCT: domain 1 of 1, from 1221 to 1228: score 1.3, E = 4.9
*->RelRRKLL<-*
Re RRKLL
gi|1340991 1221 REDRRKLL 1228
DUF678: domain 1 of 1, from 1244 to 1254: score 2.3, E = 4.1
*->GSsLrpLrDlv<-*
GS L++Lr+l
gi|1340991 1244 GSTLKMLRGLT 1254
HTH_3: domain 2 of 2, from 1247 to 1299: score 19.8, E = 0.00016
CS HHHHHH.HHTT-HH HHHHHHTT.TSHHHHHHHHHTTSSTSBHHHHH
*->lkelRkkkelglsq.eeLAeklGskvsrstiskiEnGkrePsletlk
lk lR gl+ + ++ +++G v st+++iEn++ Ps + l
gi|1340991 1247 LKMLR-----GLTAkIDVEKATG--VFISTLRDIENDRIVPSWSQLD 1286
CS HHHHHTTSHHHHH
klaeaLgvsldel<-*
+l+++++v+ +e
gi|1340991 1287 ALLNYYNVPEAEK 1299
Herpes_UL56: domain 1 of 1, from 1334 to 1353: score -0.1, E = 5.9
*->GGLLGsirasCtGPrAARgs<-*
GG+ Gs as G A Rg
gi|1340991 1334 GGVHGSEDASSSGGDALRGG 1353
CNP1: domain 1 of 1, from 1376 to 1394: score 1.6, E = 5.5
*->rnDngrWirArnaerdeWqries<-*
+++ ++W+rAr+ e W r+++
gi|1340991 1376 DAV-SEWSRARGVE---WARLVA 1394
DAP_C: domain 1 of 1, from 1384 to 1392: score 2.2, E = 3.1
CS EEEEEEEE-
*->ARGvEYkRl<-*
ARGvE+ Rl
gi|1340991 1384 ARGVEWARL 1392
Albicidin_res: domain 1 of 1, from 1395 to 1404: score 4.1, E = 0.97
*->eWpaLVaevR<-*
eW+aLV+ +R
gi|1340991 1395 EWAALVDQLR 1404
Focal_AT: domain 1 of 1, from 1535 to 1551: score 1.6, E = 3.8
*->LDaVDqaRvranllvpPk<-*
LDa D aRv + ++v ++
gi|1340991 1535 LDAADVARVMFDHQV-GR 1551
FARP: domain 1 of 2, from 1544 to 1554: score 4.0, E = 2.2
*->srdkrfmRFGR<-*
d++ +RFGR
gi|1340991 1544 MFDHQVGRFGR 1554
Spore_GerQ: domain 1 of 1, from 1579 to 1595: score 0.6, E = 9.2
*->frGviEaAgRDHiilsd<-*
frG +E RDH ++ +
gi|1340991 1579 FRGSVEGTERDHFVVFE 1595
IGF2_C: domain 1 of 1, from 1744 to 1753: score 1.2, E = 10
*->PLitLPsedP<-*
PL + P e+P
gi|1340991 1744 PLYPVPDERP 1753
NifW: domain 1 of 1, from 1785 to 1807: score 3.1, E = 2.7
*->adfvgldddesdeealaryraALerA<-*
++ ++ +d+ e++++++r ALerA
gi|1340991 1785 VVRAENVDG---EGIRRDARKALERA 1807
DUF390: domain 1 of 1, from 1788 to 1813: score -3.5, E = 8.9
*->AldsDEEGnddGAdDsDDEAGDPGAs<-*
A + D EG A + + AG PG s
gi|1340991 1788 AENVDGEGIRRDARKALERAGVPGKS 1813
Toprim: domain 1 of 1, from 1791 to 1820: score 8.5, E = 0.097
CS HHHHHHHHHHHHHHTCTTC....CCCCEEECHCS
*->reGeaiawkllellkpygpveleddkkvrriflp<-*
++Ge i+ ++ ++l+++g ++k ++r+ ++
gi|1340991 1791 VDGEGIRRDARKALERAGV----PGKSIERVLHG 1820
YcfA: domain 2 of 2, from 1797 to 1808: score 5.3, E = 1.5
*->arelikaLkklG<-*
+r+++kaL+++G
gi|1340991 1797 RRDARKALERAG 1808
ParG: domain 1 of 1, from 1811 to 1830: score 2.9, E = 2.2
CS T--HHHHHHHHHHHHHHHH-
*->GtsitDvinqLvDnWLkEne<-*
G si v++ L D LkE+e
gi|1340991 1811 GKSIERVLHGLSDALLKEQE 1830
SRP40_C: domain 1 of 1, from 1884 to 1911: score 0.6, E = 8
*->kkskskstntepakvdknskrkkkPFrR<-*
kksk + +++ k + ++++P rR
gi|1340991 1884 KKSKENKIENAKGGYGKVKHEASSPGRR 1911
RBM1CTR: domain 1 of 1, from 1905 to 1918: score 2.8, E = 7
*->eslpSRRDdylspR<-*
+s p RRDd+ls+R
gi|1340991 1905 ASSPGRRDDGLSHR 1918
NNMT_PNMT_TEMT: domain 1 of 1, from 2022 to 2034: score 6.2, E = 0.091
CS HHHHHHHTT-TTS
*->dELrkWlkkEPga<-*
+EL++Wl++EP+a
gi|1340991 2022 QELENWLNNEPSA 2034
PaaB: domain 1 of 1, from 2048 to 2072: score 0.3, E = 9.7
*->lFdpsedKvYRHpTFYdlPDevnHm<-*
lFd +++ v RHp + ++De++
gi|1340991 2048 LFDGAKELVDRHPDWAGKADEIGSP 2072
Flu_PB1: domain 1 of 1, from 2185 to 2200: score -1.5, E = 9.3
*->rLktesGRiekeefee<-*
rL + +Ri+kee ee
gi|1340991 2185 RLAGQFKRISKEEHEE 2200
Gmad1: domain 1 of 1, from 2211 to 2228: score 1.7, E = 3.6
*->gWrevpglvGagtaPvyP<-*
+W + +l G+++++vy+
gi|1340991 2211 VWEHQGELHGTAADLVYV 2228
SMC_hinge: domain 1 of 1, from 2214 to 2228: score 1.6, E = 6.7
CS -TTE EEECCCT-EE
*->asgv.lGrvadlisV<-*
++g +G++adl+ V
gi|1340991 2214 HQGElHGTAADLVYV 2228
SoxG: domain 1 of 1, from 2238 to 2248: score 2.2, E = 3.4
*->lWhwLldasaE<-*
+W++Ll+++a+
gi|1340991 2238 VWKTLLEVAAG 2248
DUF1117: domain 1 of 1, from 2246 to 2253: score 2.1, E = 3.6
*->AvGLTIWR<-*
A+GLT WR
gi|1340991 2246 AAGLTKWR 2253
Hydant_A_N: domain 1 of 1, from 2293 to 2302: score 1.2, E = 7
*->rvkeIirelg<-*
rvke++re++
gi|1340991 2293 RVKEALREML 2302
DUF642: domain 1 of 1, from 2366 to 2382: score -0.9, E = 7.4
*->sAiaQvvrkGTvpGrtY<-*
+A +Qvv +GT pG +Y
gi|1340991 2366 GAVVQVVPRGTQPGESY 2382
DUF296: domain 1 of 1, from 2428 to 2442: score 1.5, E = 7.8
*->gGglvaGpLiAageV<-*
gGg+++G + A g+V
gi|1340991 2428 GGGGFRGKVDALGPV 2442
PP2C: domain 1 of 1, from 2464 to 2484: score 0.2, E = 8.9
CS EEEEEEEEEETSSS--EEEE.
*->ldvgvsrmqgwrksmeDahia<-*
+gv+r+qgw s+ + h+a
gi|1340991 2464 TSSGVGRGQGWQSSNIGEHHA 2484
BALF1: domain 1 of 1, from 2477 to 2492: score 0.1, E = 9.4
*->adittkHaHvkllisv<-*
+ i+ HaHv li+v
gi|1340991 2477 SNIGEHHAHVDYLITV 2492
DUF533: domain 1 of 1, from 2506 to 2520: score 0.4, E = 9.4
*->ggllkglggGsnalaaG<-*
gg++++++gG al +G
gi|1340991 2506 GGPATTFAGG--ALPIG 2520
HDPD: domain 1 of 1, from 2509 to 2519: score 0.9, E = 4.9
CS HTTTTTSEEEE
*->rnAFAGtAiSI<-*
++ FAG A+ I
gi|1340991 2509 ATTFAGGALPI 2519
Crp: domain 1 of 1, from 2603 to 2615: score 4.4, E = 2.8
*->sRlLtrLrekgLI<-*
+RlL+++ +++I
gi|1340991 2603 TRLLGDFGNNNVI 2615
VacA2: domain 1 of 1, from 2631 to 2643: score 4.0, E = 2
*->AtinnskagtqsS<-*
A++++ ++gt+ S
gi|1340991 2631 ANFDSVATGTYES 2643
FARP: domain 2 of 2, from 2640 to 2650: score 2.2, E = 9
*->srdkrfmRFGR<-*
+ ++ +RFG+
gi|1340991 2640 TYESVVYRFGK 2650
SecIII_SopE_N: domain 1 of 1, from 2733 to 2738: score 1.6, E = 3.6
*->sASEGR<-*
sASEGR
gi|1340991 2733 SASEGR 2738
YaeQ: domain 1 of 1, from 2830 to 2846: score 1.3, E = 4.1
*->qvwlsdddgsvevtpev<-*
++ ++++++sv+v pev
gi|1340991 2830 TALVDSGHTSVTVRPEV 2846
DUF2254: domain 1 of 1, from 2844 to 2857: score 0.4, E = 7.5
*->peVlirLlkaLaal<-*
peV+ +Ll++ ++l
gi|1340991 2844 PEVTEHLLESIKEL 2857
Peptidase_M16_C: domain 1 of 1, from 2844 to 2873: score 1.0, E = 8.5
CS HHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHH
*->deRvlelileeleklaeeGiteeelerakaql<-*
+e v e +le +++l ++ +++ ++ r +q
gi|1340991 2844 PE-VTEHLLESIKELLSN-VPQTDVPRTVTQQ 2873
TMP_2: domain 1 of 1, from 2868 to 2884: score 1.7, E = 3.8
*->RmlpaqftdlatqLAgG<-*
R+++ qf+dl+t+LA G
gi|1340991 2868 RTVTQQFADLLTELALG 2884
PRP1_N: domain 1 of 1, from 2869 to 2877: score 0.4, E = 9.9
*->kIqqQFaDL<-*
+++qQFaDL
gi|1340991 2869 TVTQQFADL 2877
DNA_pol_delta_4: domain 1 of 1, from 2885 to 2900: score 0.3, E = 9.5
*->sgkkaaikdvypvvvr<-*
++ k+a +dv+ vr
gi|1340991 2885 PAEKRASRDVFRQSVR 2900
Aegerolysin: domain 1 of 1, from 2921 to 2942: score 1.8, E = 5.6
*->wnisesGalGtVtvtvQt.ssrk<-*
w+ sG+lGt++vt +r+
gi|1340991 2921 WSTTISGPLGTIDVTL-NlKGRE 2942
Peptidase_C36: domain 1 of 1, from 2933 to 2952: score 2.0, E = 2.1
*->svtLyLlGKEsDGHF..vAA<-*
+vtL L G+Es G F++v A
gi|1340991 2933 DVTLNLKGRESRGRFdgVEA 2952
DUF1908: domain 1 of 1, from 2968 to 3002: score 3.1, E = 0.48
*->vtkqsGsGsGLkPkDsvkeavmdSeRstvLeaesYa<-*
vt +sG +P v+ea +dS+R Le sYa
gi|1340991 2968 VTTKSGQQRRFRPMVGVQEAGHDSQRT-LLEQNSYA 3002
NatB_MDM20: domain 1 of 1, from 2993 to 3027: score 3.4, E = 1.6
*->rrlrnekildqyeslleesgmelvelenridwselsDNRDf<-*
r l++++++++++s+ ve++ +++++++s++ Df
gi|1340991 2993 RTLLEQNSYARKLSTK------VVETSSEENTRTYSFKSDF 3027
NEAT: domain 1 of 1, from 3004 to 3024: score 2.0, E = 6.3
*->fvdveVVSeDkeangtRvvrFe<-*
+ + +VV++ e n tR+ F+
gi|1340991 3004 KLSTKVVETSSEEN-TRTYSFK 3024
NuiA: domain 1 of 1, from 3005 to 3012: score 5.4, E = 0.21
CS EEEEE---
*->lsTkvVET<-*
lsTkvVET
gi|1340991 3005 LSTKVVET 3012
GH3: domain 1 of 1, from 3099 to 3124: score -1.2, E = 8.2
*->dvlkllEelTsNadqVQdnvLreILl<-*
d+l + + T N d+V + +L+++Ll
gi|1340991 3099 DALPDMSHATANSDEVHKALLKRFLL 3124
zf-dskA_traR: domain 1 of 1, from 3104 to 3125: score 2.3, E = 4.5
*->MADelDfaqeveeelrerkLaP<-*
M+ + ++++ev +l+ r L P
gi|1340991 3104 MSHATANSDEVHKALLKRFLLP 3125
EutA: domain 1 of 1, from 3190 to 3195: score -0.4, E = 6.7
*->KTLVFn<-*
K+LVF+
gi|1340991 3190 KSLVFH 3195
Prothymosin: domain 1 of 1, from 3208 to 3227: score 2.5, E = 2.5
*->sDAAvDtssEittkDLKEKKE<-*
D A ts ttk +KEK E
gi|1340991 3208 -DSAGLTSKGSTTKSIKEKHE 3227
//