hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 134101960.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|134101960|ref|YP_001107621.1|
Accession: [none]
Description: hypothetical protein SACE_5462 [Saccharopolyspora erythraea NRRL 2338]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Arch_flagellin Archaebacterial flagellin 7.4 0.067 1
ANP Atrial natriuretic peptide 2.2 0.62 1
Glyco_tran_28_C Glycosyltransferase family 28 C-termi 4.5 0.66 1
DUF2305 Uncharacterised conserved protein (DU 1.1 0.7 1
DUF1843 Domain of unknown function (DUF1843) 6.2 0.73 1
M20_dimer Peptidase dimerisation domain 5.2 1.2 1
DUF1520 Domain of Unknown Function (DUF1520) 5.2 1.5 1
Prp19 Prp19/Pso4-like 4.2 2.6 1
MuDR MuDR family transposase 3.4 2.9 1
Cas_Csy1 CRISPR-associated protein (Cas_Csy1) 0.5 3.3 1
GHMP_kinases_C GHMP kinases C terminal 2.2 4.4 1
DUF1359 Protein of unknown function (DUF1359) 2.2 4.7 1
HGTP_anticodon Anticodon binding domain 2.5 4.7 1
CTV_P33 Citrus tristeza virus P33 protein 0.7 4.8 1
DUF2147 Uncharacterized protein conserved in 3.0 5.2 1
DUF1268 Protein of unknown function (DUF1268) 1.7 5.3 1
GFO_IDH_MocA Oxidoreductase family, NAD-binding Ro 2.2 5.4 1
P16-Arc ARP2/3 complex 16 kDa subunit (p16-Ar 1.7 5.9 1
DUF1547 Domain of Unknown Function (DUF1547) 2.0 6.5 1
PP1_inhibitor PKC-activated protein phosphatase-1 i -0.1 6.6 1
UPF0020 Putative RNA methylase family UPF0020 0.6 7.2 1
AIP3 Actin interacting protein 3 0.3 7.3 1
Mqo Malate:quinone oxidoreductase (Mqo) -0.3 7.3 1
DUF1928 Domain of unknown function (DUF1928) 1.3 7.5 1
Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal do 0.9 8.2 2
Type_III_YscG Bacterial type II secretion system ch 1.3 8.8 1
SLT_beta Shiga-like toxin beta subunit 1.0 9 1
Phage_DNA_bind Helix-destabilising protein 1.6 9.5 1
HlyE Haemolysin E (HlyE) -1.0 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF2305 1/1 18 27 .. 1 10 [. 1.1 0.7
Cas_Csy1 1/1 32 39 .. 393 400 .] 0.5 3.3
CTV_P33 1/1 43 51 .. 1 10 [. 0.7 4.8
DUF1928 1/1 99 105 .. 135 141 .] 1.3 7.5
Acyl-CoA_dh_N 1/2 121 135 .. 1 16 [. 0.7 9.4
Phage_DNA_bind 1/1 125 138 .. 76 89 .] 1.6 9.5
SLT_beta 1/1 134 173 .. 37 70 .] 1.0 9
UPF0020 1/1 190 209 .. 1 20 [. 0.6 7.2
DUF2147 1/1 220 230 .. 1 16 [. 3.0 5.2
AIP3 1/1 357 366 .. 475 484 .] 0.3 7.3
DUF1843 1/1 399 422 .. 30 53 .] 6.2 0.73
Mqo 1/1 399 419 .. 472 492 .] -0.3 7.3
DUF1268 1/1 440 455 .. 111 128 .] 1.7 5.3
Prp19 1/1 445 461 .. 54 70 .] 4.2 2.6
DUF1520 1/1 501 513 .. 47 59 .] 5.2 1.5
Glyco_tran_28_C 1/1 504 558 .. 125 181 .] 4.5 0.66
P16-Arc 1/1 516 525 .. 1 10 [. 1.7 5.9
PP1_inhibitor 1/1 538 551 .. 1 14 [. -0.1 6.6
ANP 1/1 547 559 .. 1 13 [. 2.2 0.62
Acyl-CoA_dh_N 2/2 571 587 .. 1 18 [. 0.2 14
DUF1547 1/1 576 584 .. 1 9 [. 2.0 6.5
DUF1359 1/1 589 602 .. 1 14 [. 2.2 4.7
HlyE 1/1 617 641 .. 1 26 [. -1.0 9.7
Arch_flagellin 1/1 672 714 .. 189 219 .] 7.4 0.067
Type_III_YscG 1/1 745 759 .. 83 97 .. 1.3 8.8
HGTP_anticodon 1/1 801 835 .. 1 32 [. 2.5 4.7
GHMP_kinases_C 1/1 817 839 .. 71 93 .] 2.2 4.4
M20_dimer 1/1 819 845 .. 88 116 .] 5.2 1.2
GFO_IDH_MocA 1/1 823 844 .. 127 148 .] 2.2 5.4
MuDR 1/1 827 846 .. 14 33 .. 3.4 2.9
Alignments of top-scoring domains:
DUF2305: domain 1 of 1, from 18 to 27: score 1.1, E = 0.7
*->prplillIPG<-*
prpl+l++PG
gi|1341019 18 PRPLVLWLPG 27
Cas_Csy1: domain 1 of 1, from 32 to 39: score 0.5, E = 3.3
*->vErreWkr<-*
vE+reW r
gi|1341019 32 VEYREWTR 39
CTV_P33: domain 1 of 1, from 43 to 51: score 0.7, E = 4.8
*->mFAFAsEnqD<-*
FA As+nqD
gi|1341019 43 -FAVASDNQD 51
DUF1928: domain 1 of 1, from 99 to 105: score 1.3, E = 7.5
CS -S---S-
*->RWndpPi<-*
R++dpP+
gi|1341019 99 RFVDPPV 105
Acyl-CoA_dh_N: domain 1 of 2, from 121 to 135: score 0.7, E = 9.4
CS -HHHHHHHHH.HHHHH
*->teEqealrdtdvReFa<-*
+e++++ +d+ vR+++
gi|1341019 121 PEDEQLVVDR-VRALV 135
Phage_DNA_bind: domain 1 of 1, from 125 to 138: score 1.6, E = 9.5
CS SEEESS.-E EEE--
*->sLevgRRir.Lvpak<-*
+L v+R +r Lvp++
gi|1341019 125 QLVVDR-VRaLVPVL 138
SLT_beta: domain 1 of 1, from 134 to 173: score 1.0, E = 9
CS HHHHHHHHHHHT-EEEEE-SS- STTE B--EEEEE
*->LqsLLlsAqltGmtvtiKssaC.....esGs.GFaEviFr<-*
L ++L q+ G+ vt a ++++e G++GFaEv+F
gi|1341019 134 LVPVLAGTQVVGVHVTAEGRAVlpdgrEVGAeGFAEVVFG 173
UPF0020: domain 1 of 1, from 190 to 209: score 0.6, E = 7.2
*->RgyRpfngpapLkatLArAl<-*
g+R g+a++ ++LA Al
gi|1341019 190 AGRRSGSGEASFAERLAVAL 209
DUF2147: domain 1 of 1, from 220 to 230: score 3.0, E = 5.2
*->GtWkTiDDeTGdgkav<-*
G+W+T dg+++
gi|1341019 220 GVWQTA-----DGGVH 230
AIP3: domain 1 of 1, from 357 to 366: score 0.3, E = 7.3
*->vERiRkakDe<-*
+E++R ++De
gi|1341019 357 IEKLRSLRDE 366
DUF1843: domain 1 of 1, from 399 to 422: score 6.2, E = 0.73
*->LaqadeLaaAlekLkaEIARlEaR<-*
La+ +L A + +EIARl aR
gi|1341019 399 LANNADLVRAIVARTTEIARLTAR 422
Mqo: domain 1 of 1, from 399 to 419: score -0.3, E = 7.3
*->LnedpeltreiraytskaLqL<-*
L+++++l+r i a+t+++ L
gi|1341019 399 LANNADLVRAIVARTTEIARL 419
DUF1268: domain 1 of 1, from 440 to 455: score 1.7, E = 5.3
*->DedIdkaFteevDaskae<-*
De+I++ t e D+ + e
gi|1341019 440 DEQIEQF-TRERDV-LRE 455
Prp19: domain 1 of 1, from 445 to 461: score 4.2, E = 2.6
*->RLiKErDeAreaLaela<-*
++++ErD +re+L++ +
gi|1341019 445 QFTRERDVLREELSKRE 461
DUF1520: domain 1 of 1, from 501 to 513: score 5.2, E = 1.5
*->sdeQKktaDaLlp<-*
s+eQ++ +DaL+
gi|1341019 501 SAEQRAVFDALAS 513
Glyco_tran_28_C: domain 1 of 1, from 504 to 558: score 4.5, E = 0.66
*->AlelvkagaalvllqkeltpekLveallkllskklrlyekakaagal
++ + +a+a + + +l+ +++++ +l ++ +++ + k+ +l
gi|1341019 504 QRAVFDALASRPMNWRDLDVSQVAALVLAERKGRMYAQRDEKR--LL 548
arlkdaikrl<-*
rl+da+ ++
gi|1341019 549 DRLRDAAGNM 558
P16-Arc: domain 1 of 1, from 516 to 525: score 1.7, E = 5.9
*->tdfRkvDVDs<-*
+++R++DV++
gi|1341019 516 MNWRDLDVSQ 525
PP1_inhibitor: domain 1 of 1, from 538 to 551: score -0.1, E = 6.6
CS XXXXXXXXXXXXXX
*->mAAqRLGKRvLsKL<-*
m AqR KR L +L
gi|1341019 538 MYAQRDEKRLLDRL 551
ANP: domain 1 of 1, from 547 to 559: score 2.2, E = 0.62
CS XXXXXXXXXXXXX
*->LlerleDklseeq<-*
Ll+rl+D + +++
gi|1341019 547 LLDRLRDAAGNMA 559
Acyl-CoA_dh_N: domain 2 of 2, from 571 to 587: score 0.2, E = 14
CS -HHHHHHHHH.HHHHHHH
*->teEqealrdtdvReFaee<-*
+++ ++l+++ vR+++e+
gi|1341019 571 DQDAKELLAS-VRAHMEH 587
DUF1547: domain 1 of 1, from 576 to 584: score 2.0, E = 6.5
*->diLprvReH<-*
++L+ vR+H
gi|1341019 576 ELLASVRAH 584
DUF1359: domain 1 of 1, from 589 to 602: score 2.2, E = 4.7
*->MlsEikvDFrrnIe<-*
Ml + +DF++ I+
gi|1341019 589 MLLATNIDFSKRIA 602
HlyE: domain 1 of 1, from 617 to 641: score -1.0, E = 9.7
CS HHHHHHHHHHHHHHHHHHHHHHHHTH
*->ivADktvEvvKtAietADkALDLYnK<-*
+ AD +K+A etAD A + Y K
gi|1341019 617 LMADSS-SRIKNAWETADSAPEYYSK 641
Arch_flagellin: domain 1 of 1, from 672 to 714: score 7.4, E = 0.067
*->ntdstf............vginpstkvrgeVvpenGapgtief<-*
++d++f+++++++++ +++g +s++ ++eVvp +G + +++
gi|1341019 672 SLDNVFnptrdgsrrlpkYGELSSSYRSLEVVPQYGSSVIYWD 714
Type_III_YscG: domain 1 of 1, from 745 to 759: score 1.3, E = 8.8
*->rLGLgsaLesRLarL<-*
rLGL++ ++ RL rL
gi|1341019 745 RLGLLADADPRLVRL 759
HGTP_anticodon: domain 1 of 1, from 801 to 835: score 2.5, E = 4.7
CS SEEEEESSS.HH-SSHHHHH HHHHHHHHHHHT
*->qVvviPlgekdeqkeaeele...........dyAkklaeeLra<-*
+++vi ++ ++e++++ + + ++A+k++e+Lr+
gi|1341019 801 DARVIVINY--------RAEdgkrfarvpalEEAEKIQEKLRK 835
GHMP_kinases_C: domain 1 of 1, from 817 to 839: score 2.2, E = 4.4
CS EEEETEGGGHHHHHHHHHHHHHH
*->falfddeeeaeevlealrkrgkn<-*
fa ++ eeae+++e+lrk+ +
gi|1341019 817 FARVPALEEAEKIQEKLRKHALK 839
M20_dimer: domain 1 of 1, from 819 to 845: score 5.2, E = 1.2
CS EESSCCCHHHHHHHHHHHHHHHTTTSS T-
*->RDFDllpgedleellkeieaileeeap.ge<-*
R ++ e++e++++++++++ +++++++
gi|1341019 819 R---VPALEEAEKIQEKLRKHALKHGYgYK 845
GFO_IDH_MocA: domain 1 of 1, from 823 to 844: score 2.2, E = 5.4
CS HHHHHHHHHHHHHTT--EEEE-
*->veeakelvelArkkgvvlqvgf<-*
+eea++++e +rk+ ++ + g+
gi|1341019 823 LEEAEKIQEKLRKHALKHGYGY 844
MuDR: domain 1 of 1, from 827 to 846: score 3.4, E = 2.9
*->eefkkAvrqyAiknrfefkv<-*
e ++ +r++A+k+++ +kv
gi|1341019 827 EKIQEKLRKHALKHGYGYKV 846
//