hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 13470790.fa
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Query sequence: gi|13470790|ref|NP_102359.1|
Accession: [none]
Description: hypothetical protein mlr0585 [Mesorhizobium loti MAFF303099]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Collagen Collagen triple helix repeat (20 copi 1432.2 0 29
Pox_RNA_pol_35 Poxvirus DNA-directed RNA polymerase, 4.2 0.38 1
PAS_4 PAS fold 4.0 1.9 1
ACPS 4'-phosphopantetheinyl transferase su 1.5 5.5 1
CSF-1 Macrophage colony stimulating factor- -0.2 6.6 1
Glyco_hydro_59 Glycosyl hydrolase family 59 -1.6 6.7 1
DUF1047 Protein of unknown function (DUF1047) 0.3 7.1 1
HCV_NS5a_1a Hepatitis C virus non-structural 5a z 1.7 7.1 1
Glyco_transf_52 Glycosyltransferase family 52 -0.2 7.9 1
Peptidase_C2 Calpain family cysteine protease -0.7 9.4 1
DUF565 Protein of unknown function (DUF565) 1.1 9.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Glyco_hydro_59 1/1 1 17 [. 1 17 [. -1.6 6.7
Peptidase_C2 1/1 35 48 .. 1 14 [. -0.7 9.4
PAS_4 1/1 60 96 .. 55 92 .. 4.0 1.9
HCV_NS5a_1a 1/1 126 136 .. 1 11 [. 1.7 7.1
ACPS 1/1 140 155 .. 63 78 .] 1.5 5.5
Pox_RNA_pol_35 1/1 140 150 .. 285 295 .] 4.2 0.38
Glyco_transf_52 1/1 217 238 .. 283 305 .] -0.2 7.9
DUF565 1/1 269 279 .. 1 11 [. 1.1 9.6
Collagen 1/29 312 371 .. 1 60 [] 51.6 6.6e-13
Collagen 2/29 372 418 .. 1 47 [. 37.2 4.4e-09
Collagen 3/29 420 462 .. 1 43 [. 34.8 1.9e-08
Collagen 4/29 465 524 .. 1 60 [] 53.2 2.4e-13
Collagen 5/29 525 584 .. 1 60 [] 54.3 1.2e-13
Collagen 6/29 585 631 .. 1 47 [. 37.8 3e-09
Collagen 7/29 633 692 .. 1 60 [] 49.7 2.1e-12
Collagen 8/29 693 752 .. 1 60 [] 53.1 2.6e-13
Collagen 9/29 753 812 .. 1 60 [] 51.4 7.3e-13
Collagen 10/29 813 872 .. 1 60 [] 50.9 9.7e-13
Collagen 11/29 873 915 .. 1 43 [. 35.6 1.2e-08
Collagen 12/29 918 977 .. 1 60 [] 53.3 2.3e-13
Collagen 13/29 978 1037 .. 1 60 [] 52.2 4.3e-13
Collagen 14/29 1038 1097 .. 1 60 [] 49.6 2.1e-12
Collagen 15/29 1098 1157 .. 1 60 [] 52.5 3.7e-13
Collagen 16/29 1158 1217 .. 1 60 [] 49.9 1.8e-12
Collagen 17/29 1218 1277 .. 1 60 [] 54.7 9.3e-14
Collagen 18/29 1281 1329 .. 1 49 [. 40.7 5.3e-10
Collagen 19/29 1332 1391 .. 1 60 [] 51.7 6.1e-13
Collagen 20/29 1392 1451 .. 1 60 [] 55.0 7.9e-14
Collagen 21/29 1452 1511 .. 1 60 [] 53.5 2e-13
Collagen 22/29 1512 1571 .. 1 60 [] 49.7 2.1e-12
Collagen 23/29 1575 1634 .. 1 60 [] 51.2 8.1e-13
Collagen 24/29 1635 1694 .. 1 60 [] 50.8 1.1e-12
Collagen 25/29 1695 1754 .. 1 60 [] 49.9 1.8e-12
Collagen 26/29 1755 1814 .. 1 60 [] 49.9 1.8e-12
Collagen 27/29 1815 1874 .. 1 60 [] 50.9 9.8e-13
Collagen 28/29 1878 1937 .. 1 60 [] 51.6 6.5e-13
Collagen 29/29 1941 2000 .. 1 60 [] 55.6 5.5e-14
CSF-1 1/1 1982 2003 .. 1 22 [. -0.2 6.6
DUF1047 1/1 2136 2144 .. 140 152 .] 0.3 7.1
Alignments of top-scoring domains:
Glyco_hydro_59: domain 1 of 1, from 1 to 17: score -1.6, E = 6.7
*->mtAAAGsAgraAvPLLL<-*
m G Agra vPL L
gi|1347079 1 MLFSRGHAGRACVPLNL 17
Peptidase_C2: domain 1 of 1, from 35 to 48: score -0.7, E = 9.4
CS ---TTSSSSCHHHH
*->LFeDPsFPaapkSL<-*
LF DPs P +++L
gi|1347079 35 LFLDPSIPDLETAL 48
PAS_4: domain 1 of 1, from 60 to 96: score 4.0, E = 1.9
*->ledpdaarleralrrvlegeepidfleelll.pngeerh<-*
l+ +++ +r+++++leg+ +d +++l ++++g+ +
gi|1347079 60 LD--KRQPAARQMAEALEGRNGLDAVHILAHgAPGRLGF 96
HCV_NS5a_1a: domain 1 of 1, from 126 to 136: score 1.7, E = 7.1
*->lPLlgCskGwk<-*
l L++C +G++
gi|1347079 126 LRLWSCETGYG 136
ACPS: domain 1 of 1, from 140 to 155: score 1.5, E = 5.5
CS HHHHHHTTS-SSSSB-
*->EAvfKAlgpgigrgla<-*
EA+ KAl+ +g g++
gi|1347079 140 EAFVKALSEATGAGVS 155
Pox_RNA_pol_35: domain 1 of 1, from 140 to 150: score 4.2, E = 0.38
*->ElFLkALSeAf<-*
E+F+kALSeA
gi|1347079 140 EAFVKALSEAT 150
Glyco_transf_52: domain 1 of 1, from 217 to 238: score -0.2, E = 7.9
*->VainlkshsDnVevyalkiaslk<-*
V++ + + s nV+v ++ +s
gi|1347079 217 VQYYITNSS-NVIVASFTLPSKS 238
DUF565: domain 1 of 1, from 269 to 279: score 1.1, E = 9.6
*->QTGDWDvlaAa<-*
+++W+v++A+
gi|1347079 269 DNNQWSVVSAG 279
Collagen: domain 1 of 29, from 312 to 371: score 51.6, E = 6.6e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G Gp G+ G++G++G+ G +G Ga G+ G+ G+ G+ G+ G G+
gi|1347079 312 GSTGPTGATGATGATGATGRTGSTGATGSTGATGATGATGHTGSTGA 358
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 359 TGSTGATGSTGAT 371
Collagen: domain 2 of 29, from 372 to 418: score 37.2, E = 4.4e-09
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G++G++G G++G+ Ga G+ G+ G+ G+ G+ G+ G+
gi|1347079 372 GSTGATGSTGATGATGSTGATGATGATGSTGATGPTGATGATGATGS 418
<-*
gi|1347079 - -
Collagen: domain 3 of 29, from 420 to 462: score 34.8, E = 1.9e-08
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppG<-*
G+ G+ G+ G++G +G+ G++G+ G+ G Gp G+ G+ G+ G
gi|1347079 420 GATGSTGATGATGSTGATGATGATGSTGATGPTGATGATGATG 462
Collagen: domain 4 of 29, from 465 to 524: score 53.2, E = 2.4e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G++G++G G++G Ga G+ G+ G+ G+ G+ G+ G+
gi|1347079 465 GATGSTGATGDTGATGSTGATGSTGATGSTGATGDTGATGSTGATGS 511
pGppGapGapGpp<-*
G +Ga Ga G
gi|1347079 512 TGSTGATGATGDT 524
Collagen: domain 5 of 29, from 525 to 584: score 54.3, E = 1.2e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G++G++G+ G++G Ga G+ G+ G+ G+ G+ G G+
gi|1347079 525 GATGSTGATGATGATGDTGATGSTGATGSTGDTGATGATGSTGSTGA 571
pGppGapGapGpp<-*
G +Ga Ga G
gi|1347079 572 TGSTGATGATGDT 584
Collagen: domain 6 of 29, from 585 to 631: score 37.8, E = 3e-09
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G +G++G G++G Ga G+ G+ G G+ G+ G+ G+
gi|1347079 585 GATGSTGATGSTGATGSTGATGSTGATGSTGATGSTGATGSTGATGS 631
<-*
gi|1347079 - -
Collagen: domain 7 of 29, from 633 to 692: score 49.7, E = 2.1e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G++G +G+ G +G+ G+ G+ G+ G+ G G+ G G+
gi|1347079 633 GATGSTGATGATGDTGATGSTGATGSTGSTGATGATGDTGATGSTGA 679
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 680 TGATGATGDTGAT 692
Collagen: domain 8 of 29, from 693 to 752: score 53.1, E = 2.6e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G++G +G+ G +G+ Ga G+ G+ G+ G+ G+ G G+
gi|1347079 693 GSTGATGSTGATGSTGATGSTGATGATGSTGATGATGSTGATGSTGA 739
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 740 TGSTGATGSTGAT 752
Collagen: domain 9 of 29, from 753 to 812: score 51.4, E = 7.3e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G +G++G+ G++G Ga G+ G+ G G+ G+ G+ G+
gi|1347079 753 GATGSTGATGSTGATGATGATGSTGATGSTGATGSTGATGSTGATGS 799
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 800 TGATGATGDTGAT 812
Collagen: domain 10 of 29, from 813 to 872: score 50.9, E = 9.7e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G +G++G+ G++G G+ G G+ G G+ G+ G+ G+
gi|1347079 813 GSTGATGSTGSTGATGDTGATGSTGSTGATGATGSTGATGSTGATGA 859
pGppGapGapGpp<-*
G +G Ga G+
gi|1347079 860 TGSTGDTGATGAT 872
Collagen: domain 11 of 29, from 873 to 915: score 35.6, E = 1.2e-08
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppG<-*
G G G+ G++G +G+ G +G+ G+ G+ G+ G+ G+ G+ G
gi|1347079 873 GSTGATGSTGATGSTGATGSTGATGSTGDTGATGATGSTGATG 915
Collagen: domain 12 of 29, from 918 to 977: score 53.3, E = 2.3e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G G+ G +G++G G++G Ga G+ G+ G+ G+ G+ G G+
gi|1347079 918 GATGATGATGSTGATGSTGATGSTGATGSTGATGATGSTGATGSTGA 964
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 965 TGSTGATGSTGAT 977
Collagen: domain 13 of 29, from 978 to 1037: score 52.2, E = 4.3e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G++G++G+ G +G+ G+ G G+ G+ G+ G+ G G+
gi|1347079 978 GSTGATGSTGDTGATGATGSTGATGSTGATGATGATGSTGATGSTGA 1024
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 1025 TGSTGATGSTGAT 1037
Collagen: domain 14 of 29, from 1038 to 1097: score 49.6, E = 2.1e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G +G++G G++G Ga G+ G+ G G+ G+ G+ G+
gi|1347079 1038 GATGSTGATGSTGATGSTGATGSTGATGSTGATGSTGATGSTGATGS 1084
pGppGapGapGpp<-*
G +G Ga G
gi|1347079 1085 TGATGSTGATGST 1097
Collagen: domain 15 of 29, from 1098 to 1157: score 52.5, E = 3.7e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G +G++G G++G Ga G+ G+ G G+ G+ G G+
gi|1347079 1098 GATGSTGATGSTGATGSTGATGSTGATGSTGATGSTGATGSTGSTGA 1144
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 1145 TGATGATGSTGAT 1157
Collagen: domain 16 of 29, from 1158 to 1217: score 49.9, E = 1.8e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G++G +G+ G +G+ G+ G G G+ G+ G+ G G+
gi|1347079 1158 GSTGATGSTGATGSTGATGSTGATGSTGATGSTGATGSTGATGSTGA 1204
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 1205 TGSTGATGSTGAT 1217
Collagen: domain 17 of 29, from 1218 to 1277: score 54.7, E = 9.3e-14
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G++G++G G++G Ga G+ G+ G+ G+ G+ G G+
gi|1347079 1218 GSTGATGSTGATGATGSTGATGSTGATGSTGATGATGSTGATGSTGA 1264
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 1265 TGSTGATGSTGAS 1277
Collagen: domain 18 of 29, from 1281 to 1329: score 40.7, E = 5.3e-10
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G +G++G G++G Ga G+ G+ G+ G+ G+ G+ G+
gi|1347079 1281 GATGSTGATGSTGATGSTGATGSTGATGSTGATGATGSTGATGATGS 1327
pG<-*
G
gi|1347079 1328 TG 1329
Collagen: domain 19 of 29, from 1332 to 1391: score 51.7, E = 6.1e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G++G +G+ G +G+ G+ G G+ G+ G+ G+ G G+
gi|1347079 1332 GSTGATGSTGATGSTGATGSTGATGSTGATGATGATGSTGATGSTGA 1378
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 1379 TGSTGATGSTGAT 1391
Collagen: domain 20 of 29, from 1392 to 1451: score 55.0, E = 7.9e-14
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G++G++G G++G Ga G+ G+ G+ G+ G+ G G+
gi|1347079 1392 GATGSTGSTGATGATGSTGATGSTGATGSTGATGATGSTGATGSTGA 1438
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 1439 TGSTGATGSTGAT 1451
Collagen: domain 21 of 29, from 1452 to 1511: score 53.5, E = 2e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G++G++G G++G Ga G+ G+ G+ G+ G+ G G+
gi|1347079 1452 GSTGATGSTGATGATGSTGATGSTGATGSTGATGATGSTGATGSTGA 1498
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 1499 TGSTGATGSTGAT 1511
Collagen: domain 22 of 29, from 1512 to 1571: score 49.7, E = 2.1e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G +G++G G++G Ga G+ G+ G G+ G+ G+ G+
gi|1347079 1512 GATGSTGATGSTGATGSTGATGSTGASGSTGATGSTGATGSTGATGS 1558
pGppGapGapGpp<-*
G +G Ga G+
gi|1347079 1559 TGATGSTGATGAT 1571
Collagen: domain 23 of 29, from 1575 to 1634: score 51.2, E = 8.1e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G++G +G+ G +G+ G+ G G G+ G+ G+ G G+
gi|1347079 1575 GSTGATGSTGATGSTGATGSTGATGSTGATGSTGATGSTGATGSTGA 1621
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 1622 TGSTGATGSTGAS 1634
Collagen: domain 24 of 29, from 1635 to 1694: score 50.8, E = 1.1e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G++G +G+ G +G+ G+ G G+ G G+ G+ G G+
gi|1347079 1635 GSTGATGSTGATGSTGATGSTGATGSTGATGATGSTGSTGATGSTGA 1681
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 1682 TGSTGATGSTGAT 1694
Collagen: domain 25 of 29, from 1695 to 1754: score 49.9, E = 1.8e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G++G +G+ G +G+ G+ G G G+ G+ G+ G G+
gi|1347079 1695 GSTGATGSTGATGSTGATGSTGATGSTGATGSTGATGSTGATGSTGA 1741
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 1742 TGSTGATGSTGAT 1754
Collagen: domain 26 of 29, from 1755 to 1814: score 49.9, E = 1.8e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G++G +G+ G +G+ G+ G G G+ G+ G+ G G+
gi|1347079 1755 GSTGATGSTGATGSTGATGSTGATGSTGATGSTGATGSTGATGSTGA 1801
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 1802 TGSTGATGSTGAT 1814
Collagen: domain 27 of 29, from 1815 to 1874: score 50.9, E = 9.8e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G++G +G+ G++G Ga G+ G+ G G+ G+ G+ G+
gi|1347079 1815 GSTGATGSTGATGSTGATGATGSTGATGSTGATGSTGATGSTGATGS 1861
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 1862 TGATGATGSTGAT 1874
Collagen: domain 28 of 29, from 1878 to 1937: score 51.6, E = 6.5e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G++G++G G++G Ga G+ G+ G+ G+ G+ G+ G+
gi|1347079 1878 GATGSTGATGATGATGSTGATGSTGATGSTGATGATGSTGATGATGS 1924
pGppGapGapGpp<-*
G +G G+ G+
gi|1347079 1925 TGATGSTGSTGAT 1937
Collagen: domain 29 of 29, from 1941 to 2000: score 55.6, E = 5.5e-14
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G++G +G+ G +G+ G+ G+ G G+ G+ G+ G G+
gi|1347079 1941 GSTGATGSTGATGSTGATGSTGATGSTGSTGSTGATGSTGATGSTGA 1987
pGppGapGapGpp<-*
pGp+Ga Ga G +
gi|1347079 1988 PGPTGATGATGSA 2000
CSF-1: domain 1 of 1, from 1982 to 2003: score -0.2, E = 6.6
*->mTarGaaGrcPsttwlGslled<-*
++ Ga+G+ t+++Gs ++d
gi|1347079 1982 TGSTGAPGPTGATGATGSADDD 2003
DUF1047: domain 1 of 1, from 2136 to 2144: score 0.3, E = 7.1
*->KedLkdLLakdek<-*
K++LkdLL k
gi|1347079 2136 KTSLKDLL----K 2144
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