hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 13470791.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|13470791|ref|NP_102360.1|
Accession: [none]
Description: hypothetical protein mlr0587 [Mesorhizobium loti MAFF303099]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Collagen Collagen triple helix repeat (20 copi 1851.1 0 39
MSSP Male specific sperm protein 7.3 0.12 5
SQS_PSY Squalene/phytoene synthase 5.2 0.36 1
Candida_ALS Candida agglutinin-like protein (ALS) 3.2 0.39 1
DUF2605 Protein of unknown function (DUF2605) 4.3 1.1 1
SBBP Beta-propeller repeat 5.4 1.2 1
NDUFA12 NADH ubiquinone oxidoreductase subuni 5.9 1.4 1
Gmad2 Immunoglobulin-like domain of bacteri 3.5 1.6 1
Chlorovi_GP_rpt Chlorovirus glycoprotein repeat 4.6 1.7 1
Sial-lect-inser Vibrio cholerae sialidase, lectin ins 1.3 2.7 1
Tafi-CsgF Curli production assembly/transport c 2.3 3 1
2_5_RNA_ligase 2',5' RNA ligase family 3.1 3.5 1
S4 S4 domain 4.4 3.7 1
YpM Yersinia pseudotuberculosis mitogen 1.7 4.2 1
DUF1314 Protein of unknown function (DUF1314) 0.8 5.5 1
PTE Phosphotriesterase family -0.1 5.6 1
Tail_tube Phage tail tube protein 2.1 5.8 1
Viral_coat Viral coat protein (S domain) 1.1 6.3 1
DUF1805 Domain of unknown function (DUF1805) 2.0 6.9 1
BiPBP_C Penicillin-Binding Protein C-terminus 1.7 7 1
Moricin Moricin 1.3 7.7 1
Glyco_hydro_12 Glycosyl hydrolase family 12 1.0 8.9 1
DUF198 Uncharacterized ACR, COG1469 -1.4 9.4 1
PAS_4 PAS fold 1.5 9.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF1805 1/1 30 41 .. 21 37 .. 2.0 6.9
Viral_coat 1/1 33 57 .. 1 29 [. 1.1 6.3
DUF1314 1/1 61 82 .. 167 189 .] 0.8 5.5
PAS_4 1/1 103 143 .. 52 89 .. 1.5 9.6
DUF198 1/1 116 135 .. 266 289 .. -1.4 9.4
PTE 1/1 196 210 .. 99 113 .. -0.1 5.6
DUF2605 1/1 220 229 .. 90 99 .] 4.3 1.1
2_5_RNA_ligase 1/1 221 254 .. 55 91 .] 3.1 3.5
Glyco_hydro_12 1/1 262 272 .. 169 179 .] 1.0 8.9
Candida_ALS 1/1 296 309 .. 633 646 .] 3.2 0.39
YpM 1/1 410 422 .. 1 13 [. 1.7 4.2
BiPBP_C 1/1 452 467 .. 78 94 .] 1.7 7
Tail_tube 1/1 477 489 .. 108 120 .] 2.1 5.8
Gmad2 1/1 499 543 .. 53 98 .] 3.5 1.6
SQS_PSY 1/1 538 560 .. 1 23 [. 5.2 0.36
S4 1/1 585 595 .. 22 32 .. 4.4 3.7
NDUFA12 1/1 613 628 .. 1 16 [. 5.9 1.4
SBBP 1/1 654 668 .. 25 39 .] 5.4 1.2
Sial-lect-inser 1/1 664 671 .. 190 197 .] 1.3 2.7
Chlorovi_GP_rpt 1/1 665 687 .. 1 23 [. 4.6 1.7
Tafi-CsgF 1/1 694 709 .. 140 156 .] 2.3 3
Moricin 1/1 783 798 .. 1 16 [. 1.3 7.7
Collagen 1/39 798 841 .. 1 44 [. 33.0 5.7e-08
Collagen 2/39 843 902 .. 1 60 [] 51.1 8.5e-13
Collagen 3/39 903 949 .. 1 47 [. 41.8 2.6e-10
Collagen 4/39 951 1010 .. 1 60 [] 52.2 4.3e-13
Collagen 5/39 1011 1070 .. 1 60 [] 48.5 4.3e-12
Collagen 6/39 1071 1130 .. 1 60 [] 51.6 6.5e-13
Collagen 7/39 1131 1190 .. 1 60 [] 50.9 9.8e-13
Collagen 8/39 1191 1225 .. 1 35 [. 25.6 5.3e-06
Collagen 9/39 1227 1286 .. 1 60 [] 52.7 3.2e-13
Collagen 10/39 1287 1346 .. 1 60 [] 50.5 1.3e-12
Collagen 11/39 1350 1409 .. 1 60 [] 51.1 8.8e-13
Collagen 12/39 1410 1465 .. 1 56 [. 43.1 1.2e-10
Collagen 13/39 1467 1526 .. 1 60 [] 52.4 3.8e-13
Collagen 14/39 1527 1586 .. 1 60 [] 47.4 8.1e-12
Collagen 15/39 1587 1646 .. 1 60 [] 51.6 6.4e-13
Collagen 16/39 1647 1706 .. 1 60 [] 53.5 2e-13
Collagen 17/39 1707 1766 .. 1 60 [] 51.0 9.5e-13
Collagen 18/39 1767 1826 .. 1 60 [] 48.1 5.5e-12
Collagen 19/39 1827 1886 .. 1 60 [] 51.1 8.8e-13
Collagen 20/39 1887 1932 .. 1 46 [. 37.4 3.9e-09
Collagen 21/39 1935 1994 .. 1 60 [] 50.4 1.3e-12
Collagen 22/39 1995 2054 .. 1 60 [] 52.8 3.1e-13
Collagen 23/39 2055 2114 .. 1 60 [] 46.4 1.5e-11
Collagen 24/39 2115 2174 .. 1 60 [] 47.1 1e-11
Collagen 25/39 2175 2234 .. 1 60 [] 53.2 2.3e-13
Collagen 26/39 2235 2280 .. 1 46 [. 37.0 5e-09
Collagen 27/39 2283 2334 .. 1 52 [. 41.7 2.7e-10
Collagen 28/39 2337 2396 .. 1 60 [] 53.6 1.8e-13
Collagen 29/39 2397 2433 .. 1 37 [. 29.4 5.1e-07
Collagen 30/39 2436 2495 .. 1 60 [] 52.3 4.2e-13
Collagen 31/39 2496 2555 .. 1 60 [] 53.1 2.6e-13
Collagen 32/39 2559 2618 .. 1 60 [] 54.8 9e-14
Collagen 33/39 2622 2681 .. 1 60 [] 53.3 2.2e-13
Collagen 34/39 2682 2741 .. 1 60 [] 52.0 4.9e-13
MSSP 1/5 2704 2748 .. 1 50 [. 1.3 6.5
Collagen 35/39 2742 2793 .. 1 52 [. 41.3 3.6e-10
Collagen 36/39 2796 2855 .. 1 60 [] 50.6 1.2e-12
MSSP 2/5 2812 2857 .. 1 51 [. 0.8 8.9
Collagen 37/39 2856 2915 .. 1 60 [] 50.6 1.2e-12
MSSP 3/5 2872 2917 .. 1 51 [. 0.8 8.9
Collagen 38/39 2916 2962 .. 1 47 [. 38.1 2.5e-09
MSSP 4/5 2932 2977 .. 1 51 [. 0.8 8.9
Collagen 39/39 2964 3023 .. 1 60 [] 48.7 3.7e-12
MSSP 5/5 2980 3033 .. 1 62 [] 3.6 1.5
Alignments of top-scoring domains:
DUF1805: domain 1 of 1, from 30 to 41: score 2.0, E = 6.9
CS EEE--.....S--SHHH
*->AarVrpssGdGVrtvdD<-*
AarV+ GV tv++
gi|1347079 30 AARVM-----GVGTVNQ 41
Viral_coat: domain 1 of 1, from 33 to 57: score 1.1, E = 6.3
CS --S-----S----.-B-----EE-----E
*->kvgaiaAPvAvsrirvkgrkPrfsRnPGr<-*
g+ +++ A+sr +++g++Prf Gr
gi|1347079 33 VMGVGTVNQALSR-APQGVVPRFD---GR 57
DUF1314: domain 1 of 1, from 61 to 82: score 0.8, E = 5.5
*->tlstvtpqGrPtvsnsrilakGS<-*
+l+ +++ GrP ++ l+++S
gi|1347079 61 PLPATAT-GRPNARTDAPLPRAS 82
PAS_4: domain 1 of 1, from 103 to 143: score 1.5, E = 9.6
*->Ppeled.p.daarleralrrvlegeepidfleelll.pnge<-*
P+++++ ++ ++ +r+++ +leg++ +d +++ ++++g+
gi|1347079 103 PEVEAIlLdAKRPAARQMALALEGRDGLDAVHVIAHgAPGR 143
DUF198: domain 1 of 1, from 116 to 135: score -1.4, E = 9.4
*->aVRriaarLveeFpdLpdiaafrV<-*
a+R +a++L+ + ++ +a++V
gi|1347079 116 AARQMALALEGR----DGLDAVHV 135
PTE: domain 1 of 1, from 196 to 210: score -0.1, E = 5.6
CS HHHHHT-EEEEEES-
*->VaraTgvnIVAaTGl<-*
+araTg n+ AaTGl
gi|1347079 196 LARATGTNVAAATGL 210
DUF2605: domain 1 of 1, from 220 to 229: score 4.3, E = 1.1
*->WqlAarfRqa<-*
WqlA+r+R a
gi|1347079 220 WQLARRVRGA 229
2_5_RNA_ligase: domain 1 of 1, from 221 to 254: score 3.1, E = 3.5
CS HHHHCCCCHCCCSBEEEEEEEEEEEEEECCETCEEEE
*->ellealaeiafgfppFelkvdgvglFpsrltrprviy<-*
+l ++++++ +pp l++ g+g+++ l +r ++
gi|1347079 221 QLARRVRGAVVAQPP--LTAGGIGAYAGVL-VARTWV 254
Glyco_hydro_12: domain 1 of 1, from 262 to 272: score 1.0, E = 8.9
CS EEEEEEEEEEB
*->ltvanFSvsVn<-*
l+v+n+Sv+ +
gi|1347079 262 LNVNNWSVTTG 272
Candida_ALS: domain 1 of 1, from 296 to 309: score 3.2, E = 0.39
*->ttTtTst.wseslft<-*
ttT+Ts+++s+s t
gi|1347079 296 TTTITSLnISGS-NT 309
YpM: domain 1 of 1, from 410 to 422: score 1.7, E = 4.2
CS -TTEEEEEEEE-T
*->iPniAtYtGtiqG<-*
+ n+A +tGti G
gi|1347079 410 LTNLAGFTGTISG 422
BiPBP_C: domain 1 of 1, from 452 to 467: score 1.7, E = 7
*->tLtVvDadGrsdrvVrf<-*
+LtVvD++G+s +
gi|1347079 452 VLTVVDGAGQSYAL-TL 467
Tail_tube: domain 1 of 1, from 477 to 489: score 2.1, E = 5.8
*->ielkFeGdkgteq<-*
++lkF+G +gt +
gi|1347079 477 VDLKFDGASGTDV 489
Gmad2: domain 1 of 1, from 499 to 543: score 3.5, E = 1.6
*->ghatAsgGapswGt...FsatvdipapaapgtgtleVfetSpsDGsg
++++A+gGa++wG++ ++s+ +++ pa +g++ +V +++ Gs
gi|1347079 499 TFTMAQGGADAWGDtarWSGGLPLTQPA-AGPNLTFVSNHNAQ-GS- 542
se<-*
+
gi|1347079 543 -L 543
SQS_PSY: domain 1 of 1, from 538 to 560: score 5.2, E = 0.36
*->lrtgSkSFylaslLlPpelRrav<-*
+++gS S++++sl +Pp lR+a+
gi|1347079 538 NAQGSLSGNINSLYMPPTLRQAT 560
S4: domain 1 of 1, from 585 to 595: score 4.4, E = 3.7
CS HHCTTEEEETT
*->lIrhGhVkVNG<-*
lI+hG+++VNG
gi|1347079 585 LINHGQIFVNG 595
NDUFA12: domain 1 of 1, from 613 to 628: score 5.9, E = 1.4
*->gTlVGeDkfGNkYYEn<-*
gT VG + GN+Y+En
gi|1347079 613 GTGVGAGGLGNQYFEN 628
SBBP: domain 1 of 1, from 654 to 668: score 5.4, E = 1.2
*->GNiYvtGstngnnfe<-*
GNiYvtGs n+++
gi|1347079 654 GNIYVTGSGYMNIYG 668
Sial-lect-inser: domain 1 of 1, from 664 to 671: score 1.3, E = 2.7
CS EEEES-SE
*->msLYGnAs<-*
m +YGnAs
gi|1347079 664 MNIYGNAS 671
Chlorovi_GP_rpt: domain 1 of 1, from 665 to 687: score 4.6, E = 1.7
*->yFiGNGsfLtGvtatiPgtqniD<-*
+ +GN+s+ G+ +++ ++q+i+
gi|1347079 665 NIYGNASLVFGTGVGVSASQTIN 687
Tafi-CsgF: domain 1 of 1, from 694 to 709: score 2.3, E = 3
*->ngatGevTqIvvPllVe<-*
n ++G+vT+I+ ++V+
gi|1347079 694 NNTDGTVTEISS-QFVN 709
Moricin: domain 1 of 1, from 783 to 798: score 1.3, E = 7.7
*->aKiPikAiKkvGKAvG<-*
+++ i+A +G AvG
gi|1347079 783 GQVTIGATGSAGHAVG 798
Collagen: domain 1 of 39, from 798 to 841: score 33.0, E = 5.7e-08
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGp<-*
Gp Gp Gp G++G +G+ G +G+ G+ G G G+ G+ G+ G+
gi|1347079 798 GPTGPTGPTGATGSTGATGSTGATGSTGATGSTGATGSTGATGA 841
Collagen: domain 2 of 39, from 843 to 902: score 51.1, E = 8.5e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G++G +G+ G +G+ G+ G G+ G+ G+ G+ G+ G+
gi|1347079 843 GATGSTGATGATGSTGATGSTGATGSTGATGATGATGSTGATGATGS 889
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 890 TGATGATGSTGAT 902
Collagen: domain 3 of 39, from 903 to 949: score 41.8, E = 2.6e-10
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G +G++G+ G++G Ga G+ G+ G+ G+ G+ G+ G+
gi|1347079 903 GSTGVTGATGSTGATGATGATGSTGATGSTGNTGATGSTGATGATGA 949
<-*
gi|1347079 - -
Collagen: domain 4 of 39, from 951 to 1010: score 52.2, E = 4.3e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G++G +G+ G++G+ Ga G+ G+ G G+ G+ G G+
gi|1347079 951 GDTGATGSTGATGSTGATGATGDTGATGSTGATGSTGATGATGDTGA 997
pGppGapGapGpp<-*
G +Ga Ga G+
gi|1347079 998 TGSTGATGATGAT 1010
Collagen: domain 5 of 39, from 1011 to 1070: score 48.5, E = 4.3e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G++G +G+ G +G+ G+ G G+ G+ G G+ G G+
gi|1347079 1011 GDTGATGSTGATGSTGATGDTGATGSTGATGATGATGDTGATGSTGA 1057
pGppGapGapGpp<-*
G +Ga Ga G+
gi|1347079 1058 TGATGATGATGAT 1070
Collagen: domain 6 of 39, from 1071 to 1130: score 51.6, E = 6.5e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G++G++G+ G++G Ga G+ G+ G+ G G+ G+ G+
gi|1347079 1071 GDTGATGSTGATGATGDTGATGSTGATGSTGATGDTGTTGSTGATGA 1117
pGppGapGapGpp<-*
G +G Ga G+
gi|1347079 1118 TGATGDTGATGAT 1130
Collagen: domain 7 of 39, from 1131 to 1190: score 50.9, E = 9.8e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G++G++G+ G++G Ga G G+ G+ G+ G G+ G+
gi|1347079 1131 GATGSTGATGATGATGDTGATGSTGATGATGATGDTGATGDTGVTGS 1177
pGppGapGapGpp<-*
G +Ga Ga G+
gi|1347079 1178 TGATGATGATGAT 1190
Collagen: domain 8 of 39, from 1191 to 1225: score 25.6, E = 5.3e-06
*->GppGppGppGppGppGppGppGpaGapGppGppGe<-*
G G G+ G++G++G G +G+ Ga G+ G+ G+
gi|1347079 1191 GDTGATGSTGATGATGSTGTTGATGATGDTGATGD 1225
Collagen: domain 9 of 39, from 1227 to 1286: score 52.7, E = 3.2e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G++G++G+ G++G Ga G+ G+ G+ G G+ G G
gi|1347079 1227 GATGSTGATGATGATGDTGATGSTGATGSTGATGATGDTGATGSTGD 1273
pGppGapGapGpp<-*
G +Ga Ga G+
gi|1347079 1274 TGATGATGATGAT 1286
Collagen: domain 10 of 39, from 1287 to 1346: score 50.5, E = 1.3e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G G+ G +G++G+ G++G+ Ga G+ G+ G+ G+ G+ G G+
gi|1347079 1287 GATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGATGDTGA 1333
pGppGapGapGpp<-*
G +Ga Ga G+
gi|1347079 1334 TGATGATGATGAT 1346
Collagen: domain 11 of 39, from 1350 to 1409: score 51.1, E = 8.8e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G +G++G+ G++G Ga G G+ G+ G+ G+ G+ G+
gi|1347079 1350 GATGSTGATGSTGATGDTGATGSTGATGATGATGDTGATGSTGATGA 1396
pGppGapGapGpp<-*
G +G Ga G
gi|1347079 1397 TGATGDTGATGST 1409
Collagen: domain 12 of 39, from 1410 to 1465: score 43.1, E = 1.2e-10
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G G+ G++G++G G++G Ga G+ G+ G G+ G+ G G+
gi|1347079 1410 GATGATGATGDTGATGSTGATGSTGATGDTGATGSTGATGATGDTGA 1456
pGppGapGa<-*
G +Ga Ga
gi|1347079 1457 TGSTGATGA 1465
Collagen: domain 13 of 39, from 1467 to 1526: score 52.4, E = 3.8e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G++G++G G++G+ Ga G+ G+ G G+ G+ G+ G
gi|1347079 1467 GATGSTGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGD 1513
pGppGapGapGpp<-*
G +Ga Ga G+
gi|1347079 1514 TGSTGATGATGAT 1526
Collagen: domain 14 of 39, from 1527 to 1586: score 47.4, E = 8.1e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G++G++G+ G++G+ G G G G+ G+ G+ G G+
gi|1347079 1527 GDTGATGSTGATGATGATGATGATGDTGATGSTGATGATGATGDTGA 1573
pGppGapGapGpp<-*
G +Ga Ga G
gi|1347079 1574 TGSTGATGATGDT 1586
Collagen: domain 15 of 39, from 1587 to 1646: score 51.6, E = 6.4e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G++G++G+ G++G Ga G G+ G+ G+ G+ G+ G+
gi|1347079 1587 GATGSTGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGA 1633
pGppGapGapGpp<-*
G +Ga Ga G
gi|1347079 1634 TGATGATGATGDT 1646
Collagen: domain 16 of 39, from 1647 to 1706: score 53.5, E = 2e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G +G++G+ G++G+ Ga G+ G+ G+ G+ G+ G+ G
gi|1347079 1647 GATGSTGATGSTGATGDTGATGATGATGDTGATGATGATGATGATGD 1693
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 1694 TGATGATGSTGAT 1706
Collagen: domain 17 of 39, from 1707 to 1766: score 51.0, E = 9.5e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G G+ G +G++G+ G++G+ Ga G+ G+ G+ G+ G+ G G+
gi|1347079 1707 GATGDTGATGSTGATGATGATGDTGATGSTGATGATGATGATGDTGA 1753
pGppGapGapGpp<-*
G +Ga Ga G+
gi|1347079 1754 TGSTGATGATGAT 1766
Collagen: domain 18 of 39, from 1767 to 1826: score 48.1, E = 5.5e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G++G++G+ G +G+ G+ G G+ G+ G+ G+ G+ G+
gi|1347079 1767 GDTGATGSTGATGATGATGDTGATGSTGATGATGDTGATGSTGATGA 1813
pGppGapGapGpp<-*
G +Ga Ga G
gi|1347079 1814 TGATGATGATGDT 1826
Collagen: domain 19 of 39, from 1827 to 1886: score 51.1, E = 8.8e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G +G++G+ G++G Ga G G+ G+ G+ G+ G+ G+
gi|1347079 1827 GATGSTGATGSTGATGDTGATGSTGATGATGATGDTGATGSTGATGA 1873
pGppGapGapGpp<-*
G +G Ga G
gi|1347079 1874 TGATGDTGATGST 1886
Collagen: domain 20 of 39, from 1887 to 1932: score 37.4, E = 3.9e-09
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppG<
G+ G G+ G++G++G G++G+ Ga G+ G+ G G+ G+ G+ G
gi|1347079 1887 GATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGATGATG 1932
-*
gi|1347079 - -
Collagen: domain 21 of 39, from 1935 to 1994: score 50.4, E = 1.3e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G++G++G+ G++G Ga G G+ G+ G+ G+ G+ G+
gi|1347079 1935 GATGSTGATGATGATGDTGATGSTGATGATGATGDTGATGSTGATGA 1981
pGppGapGapGpp<-*
G +G Ga G
gi|1347079 1982 TGATGDTGATGST 1994
Collagen: domain 22 of 39, from 1995 to 2054: score 52.8, E = 3.1e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G G+ G++G++G G++G Ga G+ G+ G+ G+ G+ G+ G+
gi|1347079 1995 GATGATGSTGDTGATGSTGATGVTGATGDTGATGATGATGATGATGS 2041
pGppGapGapGpp<-*
G +Ga G+ G
gi|1347079 2042 TGATGATGSTGDT 2054
Collagen: domain 23 of 39, from 2055 to 2114: score 46.4, E = 1.5e-11
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G G G++G +G+ G +G+ Ga G G+ G+ G G+ G G
gi|1347079 2055 GATGATGDTGATGSTGATGSTGATGATGATGATGATGDTGATGSTGD 2101
pGppGapGapGpp<-*
G +G Ga G+
gi|1347079 2102 TGATGSTGATGAT 2114
Collagen: domain 24 of 39, from 2115 to 2174: score 47.1, E = 1e-11
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G G+ G++G++G+ G++G+ Ga G+ G+ G+ G+ G G+ G+
gi|1347079 2115 GATGATGATGATGATGATGATGDTGATGSTGATGATGATGDTGATGS 2161
pGppGapGapGpp<-*
G +Ga Ga G
gi|1347079 2162 TGATGATGATGDT 2174
Collagen: domain 25 of 39, from 2175 to 2234: score 53.2, E = 2.3e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G +G++G+ G++G Ga G G+ G+ G+ G+ G+ G+
gi|1347079 2175 GATGSTGATGSTGATGDTGATGSTGATGATGDTGATGSTGATGATGS 2221
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 2222 TGATGATGDTGAT 2234
Collagen: domain 26 of 39, from 2235 to 2280: score 37.0, E = 5e-09
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppG<
G G G G++G +G+ G++G+ Ga G+ G+ G+ G+ G+ G+ G
gi|1347079 2235 GSTGATGDTGATGSTGATGATGDTGATGSTGATGATGATGATGATG 2280
-*
gi|1347079 - -
Collagen: domain 27 of 39, from 2283 to 2334: score 41.7, E = 2.7e-10
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G +G++G+ G++G Ga G G+ G+ G+ G+ G+ G+
gi|1347079 2283 GATGSTGATGSTGATGDTGATGSTGATGATGATGDTGATGSTGATGA 2329
pGppG<-*
G +G
gi|1347079 2330 TGATG 2334
Collagen: domain 28 of 39, from 2337 to 2396: score 53.6, E = 1.8e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G +G++G+ G++G Ga G+ G+ G+ G+ G+ G+ G+
gi|1347079 2337 GATGSTGATGSTGATGDTGATGSTGATGSTGDTGATGSTGATGATGA 2383
pGppGapGapGpp<-*
G +G Ga G
gi|1347079 2384 TGVTGDRGATGST 2396
Collagen: domain 29 of 39, from 2397 to 2433: score 29.4, E = 5.1e-07
*->GppGppGppGppGppGppGppGpaGapGppGppGepG<-*
G+ G+ G+ G++G++G++G++G+ Ga G+ G+ G+ G
gi|1347079 2397 GATGSTGATGATGATGASGATGDTGATGSTGATGATG 2433
Collagen: domain 30 of 39, from 2436 to 2495: score 52.3, E = 4.2e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G+ G++G++G G++G+ Ga G+ G+ G+ G+ G+ G+ G+
gi|1347079 2436 GATGSTGATGDTGATGSTGATGDTGATGSTGATGATGSAGATGATGA 2482
pGppGapGapGpp<-*
G +Ga G+ G+
gi|1347079 2483 TGDTGATGSTGAT 2495
Collagen: domain 31 of 39, from 2496 to 2555: score 53.1, E = 2.6e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G G G++G++G+ G++G Ga G+ G+ G+ G+ G+ G+ G+
gi|1347079 2496 GATGATGDTGATGATGDTGATGSTGATGSTGATGDTGATGSTGATGS 2542
pGppGapGapGpp<-*
G +Ga Ga G+
gi|1347079 2543 TGATGATGATGAS 2555
Collagen: domain 32 of 39, from 2559 to 2618: score 54.8, E = 9e-14
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G++G++G+ G +G+ G+ G G+ G+ G+ G+ G+ G+
gi|1347079 2559 GDTGATGSTGATGATGDTGSTGATGSTGATGDTGATGSTGATGATGA 2605
pGppGapGapGpp<-*
pG +Ga G+ G+
gi|1347079 2606 PGATGATGDTGAT 2618
Collagen: domain 33 of 39, from 2622 to 2681: score 53.3, E = 2.2e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G++G++G+ G++G Ga G G +G+ G+ G+ G+ G+
gi|1347079 2622 GDTGATGSTGATGATGDTGATGSTGATGATGSAGATGSTGATGATGA 2668
pGppGapGapGpp<-*
G++Ga G+ G+
gi|1347079 2669 TGNTGATGSTGAT 2681
Collagen: domain 34 of 39, from 2682 to 2741: score 52.0, E = 4.9e-13
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G G+ G +Gp+G+ G +G G++G+ Gp+G+ G+ G+ G G+
gi|1347079 2682 GSTGATGATGSTGPKGDTGSTGSTGPKGDTGPKGATGATGATGSTGA 2728
pGppGapGapGpp<-*
Gp+G G++G
gi|1347079 2729 TGPKGDTGPKGDT 2741
MSSP: domain 1 of 5, from 2704 to 2748: score 1.3, E = 6.5
*->vgGPCgpCGPCggpcCGsccsPCggpCgPCgpCGpCGPccggCGPCG
GP g GP g+ G ++ g g gp G GP+ g GP G
gi|1347079 2704 STGPKGDTGPKGA--TG--ATGATGSTGATGPKGDTGPK-GDTGPKG 2745
pCG<-*
G
gi|1347079 2746 ATG 2748
Collagen: domain 35 of 39, from 2742 to 2793: score 41.3, E = 3.6e-10
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
Gp+G G+ G++G +G Gp+G G++G+ Gp+G+ G+ G+ G G+
gi|1347079 2742 GPKGATGATGATGSTGSTGPTGSTGPKGDTGPKGATGATGATGSTGS 2788
pGppG<-*
Gp+G
gi|1347079 2789 TGPKG 2793
Collagen: domain 36 of 39, from 2796 to 2855: score 50.6, E = 1.2e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
Gp+G G+ G++G +G Gp+G G++G+ Gp+G+ G+ G+ G G+
gi|1347079 2796 GPKGATGATGATGSTGSTGPTGSTGPKGDTGPKGATGATGATGSTGS 2842
pGppGapGapGpp<-*
Gp+G G++G
gi|1347079 2843 TGPTGSTGPKGDT 2855
MSSP: domain 2 of 5, from 2812 to 2857: score 0.8, E = 8.9
*->vgGPCgpCGPCggpcCGsccsPCg..gpCgPCgpCGpCGPccggCGP
GP g GP g G P g +g g g G GP g GP
gi|1347079 2812 STGPTGSTGPKGD--TG----PKGatGATGATGSTGSTGPT-GSTGP 2851
CGpCGP<-*
G GP
gi|1347079 2852 KGDTGP 2857
Collagen: domain 37 of 39, from 2856 to 2915: score 50.6, E = 1.2e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
Gp+G G+ G++G +G Gp+G G++G+ Gp+G+ G+ G+ G G+
gi|1347079 2856 GPKGATGATGATGSTGSTGPTGSTGPKGDTGPKGATGATGATGSTGS 2902
pGppGapGapGpp<-*
Gp+G G++G
gi|1347079 2903 TGPTGSTGPKGDT 2915
MSSP: domain 3 of 5, from 2872 to 2917: score 0.8, E = 8.9
*->vgGPCgpCGPCggpcCGsccsPCg..gpCgPCgpCGpCGPccggCGP
GP g GP g G P g +g g g G GP g GP
gi|1347079 2872 STGPTGSTGPKGD--TG----PKGatGATGATGSTGSTGPT-GSTGP 2911
CGpCGP<-*
G GP
gi|1347079 2912 KGDTGP 2917
Collagen: domain 38 of 39, from 2916 to 2962: score 38.1, E = 2.5e-09
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
Gp+G G+ G++G +G Gp+G G++G+ Gp+G+ G+ G+ G G+
gi|1347079 2916 GPKGATGATGATGSTGSTGPTGSTGPKGDTGPKGATGATGATGSTGS 2962
<-*
gi|1347079 - -
MSSP: domain 4 of 5, from 2932 to 2977: score 0.8, E = 8.9
*->vgGPCgpCGPCggpcCGsccsPCg..gpCgPCgpCGpCGPccggCGP
GP g GP g G P g +g g g G GP g GP
gi|1347079 2932 STGPTGSTGPKGD--TG----PKGatGATGATGSTGSTGPT-GSTGP 2971
CGpCGP<-*
G GP
gi|1347079 2972 KGDTGP 2977
Collagen: domain 39 of 39, from 2964 to 3023: score 48.7, E = 3.7e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
Gp G+ Gp+G++Gp+G+ G++G+ G+ G Gp+G+ Gp G Gp G+
gi|1347079 2964 GPTGSTGPKGDTGPKGATGATGATGSTGATGPKGDTGPKGDTGPKGA 3010
pGppGapGapGpp<-*
G +Ga G+ Gp
gi|1347079 3011 TGATGATGPTGPS 3023
MSSP: domain 5 of 5, from 2980 to 3033: score 3.6, E = 1.5
*->vgGPCgpCGPCggpcCGsccsPCggpCgPCgpCGpCGPccggCGPCG
G g+ G g+ G P g gP g Gp G g+ G G
gi|1347079 2980 ATGATGATGSTGA--TG----PKGD-TGPKGDTGPKGAT-GATGATG 3018
pCGPCCGttekycGl<-*
p GP G ++
gi|1347079 3019 PTGPSSGHHDSIVPS 3033
//