hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 144897667.fa
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Query sequence: gi|144897667|emb|CAM74531.1|
Accession: [none]
Description: Autotransporter adhesin [Magnetospirillum gryphiswaldense MSR-1]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
He_PIG Putative Ig domain 47.8 8.9e-13 1
HemolysinCabind Hemolysin-type calcium-binding repeat 37.2 4.1e-10 2
PKD PKD domain 11.5 0.0052 2
HYR HYR domain 12.0 0.0063 1
Cadherin Cadherin domain 7.6 0.18 1
NEAT Iron Transport-associated domain 6.5 0.35 1
BiPBP_C Penicillin-Binding Protein C-terminus 5.1 0.7 1
HATPase_c Histidine kinase-, DNA gyrase B-, and 4.9 0.77 1
Fasciclin Fasciclin domain 3.8 1 1
F420_oxidored NADP oxidoreductase coenzyme F420-dep 3.3 1.3 1
Vps35 Vacuolar protein sorting-associated p 1.3 1.5 1
Reo_sigmaC Reovirus sigma C capsid protein 1.9 1.6 1
Wzz Chain length determinant protein 3.4 1.7 1
AGTRAP Angiotensin II, type I receptor-assoc 3.2 1.7 1
DGOK 2-keto-3-deoxy-galactonokinase 0.1 1.8 1
STN Secretin and TonB N terminus short do 4.1 2.3 1
DUF291 Domain of unknown function 4.2 2.8 1
Ycf4 Ycf4 0.8 2.9 1
Fil_haemagg Haemagluttinin repeat 3.5 2.9 1
Mog1 Ran-interacting Mog1 protein 2.0 3 1
PPV_E2_N E2 (early) protein, N terminal 2.2 3.5 1
OmpA_membrane OmpA-like transmembrane domain 1.7 4.4 1
DUF490 Family of unknown function (DUF490) 0.8 4.8 1
SEF14_adhesin SEF14-like adhesin 1.0 5.6 1
Sen15 Sen15 protein 1.0 6.2 1
DUF802 Domain of unknown function (DUF802) 3.0 6.8 1
RTX RTX N-terminal domain -1.8 7.1 1
ARM_1 Adhesion regulating molecule conserve -0.3 7.5 1
PLRV_ORF5 Potato leaf roll virus readthrough pr -0.7 7.7 1
DUF1565 Protein of unknown function (DUF1565) -0.8 8.5 1
RE_MamI MamI restriction endonuclease -0.8 8.6 1
DUF1522 Domain of Unknown Function (DUF1522) 1.1 8.7 1
CTP-dep_RFKase Domain of unknown function DUF120 0.9 8.9 1
LytR_cpsA_psr Cell envelope-related transcriptional 0.2 9.2 1
Neisseria_PilC Neisseria PilC protein -2.8 9.9 1
SdrG_C_C C-terminus of bacterial fibrinogen-bi 1.2 9.9 1
RecR RecR protein 3.3 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SEF14_adhesin 1/1 46 56 .. 1 11 [. 1.0 5.6
LytR_cpsA_psr 1/1 97 118 .. 89 110 .. 0.2 9.2
ARM_1 1/1 168 183 .. 366 381 .] -0.3 7.5
Fasciclin 1/1 171 219 .. 84 135 .. 3.8 1
Reo_sigmaC 1/1 197 215 .. 308 326 .] 1.9 1.6
DUF802 1/1 278 297 .. 1 22 [. 3.0 6.8
DUF490 1/1 332 375 .. 1 42 [. 0.8 4.8
PKD 1/2 337 384 .. 40 92 .] 0.6 12
DUF291 1/1 338 378 .. 49 92 .] 4.2 2.8
Wzz 1/1 359 385 .. 217 242 .] 3.4 1.7
PPV_E2_N 1/1 390 414 .. 181 205 .] 2.2 3.5
NEAT 1/1 391 412 .. 84 105 .. 6.5 0.35
SdrG_C_C 1/1 402 421 .. 1 24 [. 1.2 9.9
RecR 1/1 431 445 .. 1 15 [. 3.3 10
CTP-dep_RFKase 1/1 445 453 .. 121 129 .] 0.9 8.9
RTX 1/1 521 526 .. 662 667 .] -1.8 7.1
Fil_haemagg 1/1 585 661 .. 1 75 [] 3.5 2.9
STN 1/1 611 628 .. 35 53 .] 4.1 2.3
Vps35 1/1 612 622 .. 895 905 .] 1.3 1.5
DUF1565 1/1 650 687 .. 120 177 .. -0.8 8.5
DGOK 1/1 676 684 .. 290 298 .] 0.1 1.8
Mog1 1/1 691 702 .. 1 12 [. 2.0 3
OmpA_membrane 1/1 786 809 .. 141 164 .. 1.7 4.4
HemolysinCabind 1/2 808 825 .. 1 18 [] 17.9 0.00029
HemolysinCabind 2/2 826 843 .. 1 18 [] 19.3 0.00011
Neisseria_PilC 1/1 844 872 .. 934 961 .. -2.8 9.9
DUF1522 1/1 858 867 .. 1 10 [. 1.1 8.7
F420_oxidored 1/1 897 918 .. 230 253 .] 3.3 1.3
Ycf4 1/1 909 915 .. 174 180 .] 0.8 2.9
AGTRAP 1/1 922 944 .. 145 168 .] 3.2 1.7
PKD 2/2 952 1014 .. 40 92 .] 10.9 0.0081
He_PIG 1/1 963 1003 .. 1 61 [] 47.8 8.9e-13
Cadherin 1/1 989 1015 .. 72 107 .] 7.6 0.18
HYR 1/1 990 1014 .. 60 86 .] 12.0 0.0063
HATPase_c 1/1 992 1015 .. 103 126 .] 4.9 0.77
BiPBP_C 1/1 995 1010 .. 78 94 .] 5.1 0.7
RE_MamI 1/1 1000 1018 .. 332 350 .] -0.8 8.6
PLRV_ORF5 1/1 1014 1025 .. 1 12 [. -0.7 7.7
Sen15 1/1 1015 1024 .. 1 10 [. 1.0 6.2
Alignments of top-scoring domains:
SEF14_adhesin: domain 1 of 1, from 46 to 56: score 1.0, E = 5.6
CS TT-EEEBTTS-
*->kSklavlvlAL<-*
k++v+++AL
gi|1448976 46 HPKSSVAIFAL 56
LytR_cpsA_psr: domain 1 of 1, from 97 to 118: score 0.2, E = 9.2
*->YveVdFdgFadlvDaLGPGVdV<-*
+v ++g + l+Da+GPG+dV
gi|1448976 97 FVDAGLSGYQSLIDAIGPGIDV 118
ARM_1: domain 1 of 1, from 168 to 183: score -0.3, E = 7.5
*->AAnkGDlEaFakALek<-*
AA++GDl a +AL +
gi|1448976 168 AAFAGDLSALGRALSQ 183
Fasciclin: domain 1 of 1, from 171 to 219: score 3.8, E = 1
CS HHCSCCCCSEEBCTTSS EEEEEECECCCEE-EEEEETTEEEEEEEE
*->ssdLkngsnvtttlqGs.lrvnvslngggegfvvvndgvnnArvvqa
+ dL+ ++++++ G+ l + +++ g+ g+ ++++ A + a
gi|1448976 171 AGDLSALGRALS-QDGDvLIYGCDVAAGDAGTAFIRE---LAVLTGA 213
CS EEEESS
DieatN<-*
D++a+N
gi|1448976 214 DVAASN 219
Reo_sigmaC: domain 1 of 1, from 197 to 215: score 1.9, E = 1.6
*->GGsGTAnirFLTVRTGIDT<-*
G GTA ir L V TG D
gi|1448976 197 GDAGTAFIRELAVLTGADV 215
DUF802: domain 1 of 1, from 278 to 297: score 3.0, E = 6.8
*->lsagFeasaaavaaantlaaWa<-*
ag++as+a+ ++ aW+
gi|1448976 278 AGAGLAASTATLSD--PDDAWN 297
DUF490: domain 1 of 1, from 332 to 375: score 0.8, E = 4.8
*->ldglsatglgggGtltasGtl..dl...aadlpadLtikgvadnlrl
+++ + ++Gtl++sGt +++ +a ++ +t +++a+n+++
gi|1448976 332 ISRGADV---SDGTLSISGTQiaSWtyaSATGRLTITFNASAHNAHV 375
<-*
gi|1448976 - -
PKD: domain 1 of 2, from 337 to 384: score 0.6, E = 12
CS E-SS.SSSEEEECSSEEEEEESS....SEEEEEEEEEEETTCEEEEE
*->dFGDggspgttstepnvtHtYskgsVtpGtYtVtLtvsngvgsasat
d+ D ++ ++s+ + ++ tY + ++G t+t ++s ++ ++ +
gi|1448976 337 DVSD--GTLSISGTQIASWTYAS---ATGRLTITFNASAHNAHVQTV 378
CS EEEEEE
tttvtV<-*
+++t
gi|1448976 379 MRSITY 384
DUF291: domain 1 of 1, from 338 to 378: score 4.2, E = 2.8
*->VSGntvTikksYLatlis.sgplGttatLTFdFsaGaTadpvLtv<-
VS+ t+ i+ + a+ + ++++G + t+TF+ sa + + v tv
gi|1448976 338 VSDGTLSISGTQIASW-TyASATGRL-TITFNASAHN--AHVQTV 378
*
gi|1448976 - -
Wzz: domain 1 of 1, from 359 to 385: score 3.4, E = 1.7
*->tgiltvsvt.gedpeeaakiansiaev<-*
tg+lt++++ + +++++++++si+++
gi|1448976 359 TGRLTITFNaSAHNAHVQTVMRSITYA 385
PPV_E2_N: domain 1 of 1, from 390 to 414: score 2.2, E = 3.5
CS C-S.SS-EEEECTTCEEE--S----
*->YGtvTGtWeVhvggqvIycPvsvsS<-*
YGt + +V +g v ++ vsv+S
gi|1448976 390 YGTAKVRFAVNDGDAVTNADVSVTS 414
NEAT: domain 1 of 1, from 391 to 412: score 6.5, E = 0.35
*->gtRvvrFeVsdldkklnakvhV<-*
gt +vrF V d+d+++na v+V
gi|1448976 391 GTAKVRFAVNDGDAVTNADVSV 412
SdrG_C_C: domain 1 of 1, from 402 to 421: score 1.2, E = 9.9
*->vdydnnggvnvnSAFTEsIttlDk<-*
+d ++n +v+v+S s ++D+
gi|1448976 402 GDAVTNADVSVTS----STIYVDQ 421
RecR: domain 1 of 1, from 431 to 445: score 3.3, E = 10
*->aevlrLAkaLleAke<-*
a++ +LA+aL++A++
gi|1448976 431 ADGFNLAEALTKAVD 445
CTP-dep_RFKase: domain 1 of 1, from 445 to 453: score 0.9, E = 8.9
*->DGDeVeiev<-*
DGD+++i+
gi|1448976 445 DGDTIKIQA 453
RTX: domain 1 of 1, from 521 to 526: score -1.8, E = 7.1
*->LTIDgt<-*
LTIDg+
gi|1448976 521 LTIDGR 526
Fil_haemagg: domain 1 of 1, from 585 to 661: score 3.5, E = 2.9
CS EEESSEEEETT TT--EE-SEEEEEE-STT-EE
*->vaaGaltlnaa...............alggldlnnggtlsagggltl
aa +t++++++ ++ ++++ ++g ++l ++ t+ agg l++
gi|1448976 585 GAATPVTVTIKnsvintyqktgiiawGNGLTALIQNNTITAGGVLGI 631
CS EE-S-EEESSE...................EEEEESS-EEEEE
taagllnnggtliaggdlllaagalrnggdltltaaGdLdnsg<-*
++++ ++ g + + +g+ l+ +++++++n g
gi|1448976 632 SNQNGIQVGSAGTRSGT-------------LATISGNTITNLG 661
STN: domain 1 of 1, from 611 to 628: score 4.1, E = 2.3
CS TS-EEEEE-SSSEEEEEE-
*->gsgLeyrrqgnntivigpa<-*
g+gL++++q+ nti+ g
gi|1448976 611 GNGLTALIQN-NTITAGGV 628
Vps35: domain 1 of 1, from 612 to 622: score 1.3, E = 1.5
*->ngLIeLIqenl<-*
ngL +LIq+n
gi|1448976 612 NGLTALIQNNT 622
DUF1565: domain 1 of 1, from 650 to 687: score -0.8, E = 8.5
*->stIAGftITNPRNRGKGLWiESVSPViAHnsnimegslkgtGvwies
+tI G tITN sn+ ++ tG+ ++
gi|1448976 650 ATISGNTITNL------------------GSND--SEYSATGIIVRQ 676
tssp.kIrNNTf<-*
+ +++ I+NNTf
gi|1448976 677 A-GIsEIANNTF 687
DGOK: domain 1 of 1, from 676 to 684: score 0.1, E = 1.8
*->rAGLseiAr<-*
+AG+seiA
gi|1448976 676 QAGISEIAN 684
Mog1: domain 1 of 1, from 691 to 702: score 2.0, E = 3
*->dvpLFGGALSAi<-*
p FGGA SAi
gi|1448976 691 GTPVFGGATSAI 702
OmpA_membrane: domain 1 of 1, from 786 to 809: score 1.7, E = 4.4
CS EEEESSSSEEEEEEEEEEEEEEEE
*->lsyPllddLDvYgkvGgalvraDy<-*
lsy l d+ Dv++ G+a ++D+
gi|1448976 786 LSYDLFDGVDVFTDTGAAATHVDG 809
HemolysinCabind: domain 1 of 2, from 808 to 825: score 17.9, E = 0.00029
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG+GnDtL+ g+G+D l
gi|1448976 808 DGGDGNDTLTTGSGADEL 825
HemolysinCabind: domain 2 of 2, from 826 to 843: score 19.3, E = 0.00011
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG+G D+L+Gg+G Dt+
gi|1448976 826 TGGEGADILTGGGGRDTF 843
Neisseria_PilC: domain 1 of 1, from 844 to 872: score -2.8, E = 9.9
*->vPeantavAqYsGh.kktskGKsiPiGCm<-*
v a + +A Ys h+k +GK iP+G m
gi|1448976 844 VLSAADTIADYSPHdKMVVRGKTIPVGRM 872
DUF1522: domain 1 of 1, from 858 to 867: score 1.1, E = 8.7
*->sTLtVNGKTI<-*
++++V GKTI
gi|1448976 858 DKMVVRGKTI 867
F420_oxidored: domain 1 of 1, from 897 to 918: score 3.3, E = 1.3
CS CSTTEEEEEEESGGGHHHHHTHHH
*->dvtGfggvdiGgLralerleprta<-*
++tG++gv++++Lr++ +++ ++
gi|1448976 897 RLTGWAGVTAAALRVSIEGG--DT 918
Ycf4: domain 1 of 1, from 909 to 915: score 0.8, E = 2.9
*->LqVpLEG<-*
L+V++EG
gi|1448976 909 LRVSIEG 915
AGTRAP: domain 1 of 1, from 922 to 944: score 3.2, E = 1.7
*->ID.ssdapAdpdalpenkGqvaRgY<-*
ID+ + a d+ p+ Gqv+R Y
gi|1448976 922 IDrAATATTDAVTPPD--GQVTRSY 944
PKD: domain 2 of 2, from 952 to 1014: score 10.9, E = 0.0081
CS E-SS .SSSEEEECSSEEEEEESS....SEEEEE
*->dFGD..............ggspgttstepnvtHtYskgsVtpGtYtV
+F D++++++ + + ++ + g +st ++ t + +G++ V
gi|1448976 952 TFTDpdsgdtltysasglPPGLGISSTTGAISGTPTA----AGSHVV 994
CS EEEEEETTCEEEEEEEEEEE
tLtvsngvgsasattttvtV<-*
t t+++++g +++ t t++V
gi|1448976 995 TITATDAAGVSTTITFTIKV 1014
He_PIG: domain 1 of 1, from 963 to 1003: score 47.8, E = 8.9e-13
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
ty++ +gLP GL ++s+tG+i+GtPt +
gi|1448976 963 TYSA-----------------SGLPPGLGISSTTGAISGTPTAA--- 989
Gsytftvtatdgsg<-*
Gs +t+tatd++g
gi|1448976 990 GSHVVTITATDAAG 1003
Cadherin: domain 1 of 1, from 989 to 1015: score 7.6, E = 0.18
CS .S-B--EEE----.........S---EEEE--EEE-
*->ngeYeLtveAtDadpllasgggpplsstatvtitVl<-*
+g +++t+ AtDa+ + s+t t ti+V
gi|1448976 989 AGSHVVTITATDAA---------GVSTTITFTIKVD 1015
HYR: domain 1 of 1, from 990 to 1014: score 12.0, E = 0.0063
*->GEettVtYtatDnaGNeAdsCtFtVtV<-*
G +++Vt tatD+aG + + tFt++V
gi|1448976 990 G-SHVVTITATDAAGVST-TITFTIKV 1014
HATPase_c: domain 1 of 1, from 992 to 1015: score 4.9, E = 0.77
CS TTEEEEEEEETTTEEEEEEEEECC
*->hgGtitvesepggGttftltlPla<-*
h +tit+++ g tt+t+t++++
gi|1448976 992 HVVTITATDAAGVSTTITFTIKVD 1015
BiPBP_C: domain 1 of 1, from 995 to 1010: score 5.1, E = 0.7
*->tLtVvDadGrsdrvVrf<-*
t+t++Da+G s ++ +f
gi|1448976 995 TITATDAAGVSTTI-TF 1010
RE_MamI: domain 1 of 1, from 1000 to 1018: score -0.8, E = 8.6
*->DlAavSeiesFdAevdeyS<-*
D A vS + +F vd++
gi|1448976 1000 DAAGVSTTITFTIKVDGGP 1018
PLRV_ORF5: domain 1 of 1, from 1014 to 1025: score -0.7, E = 7.7
*->VDgePgPsPsPs<-*
VDg+P+Ps +P+
gi|1448976 1014 VDGGPAPSNAPA 1025
Sen15: domain 1 of 1, from 1015 to 1024: score 1.0, E = 6.2
*->DGGGAPsWAP<-*
DGG APs AP
gi|1448976 1015 DGGPAPSNAP 1024
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