hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            144898484.fa
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Query sequence: gi|144898484|emb|CAM75348.1|
Accession:      [none]
Description:    conserved hypothetical protein [Magnetospirillum gryphiswaldense MSR-1]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
A2M_N           Alpha-2-macroglobulin family N-termin    49.0    7.1e-14   9
HYR             HYR domain                               33.7    2.2e-09   6
He_PIG          Putative Ig domain                       27.7    4.5e-07   5
Cna_B           Cna protein B-type domain                15.6     0.0003   6
Y_Y_Y           Y_Y_Y domain                             14.5     0.0014   1
Cadherin        Cadherin domain                          11.6      0.013   4
Big_3           Bacterial Ig-like domain (group 3)       11.8      0.025   5
Mo-co_dimer     Mo-co oxidoreductase dimerisation dom     8.4      0.046   4
Gp5_C           Gp5 C-terminal repeat (3 copies)         10.2       0.05   4
BNR             BNR/Asp-box repeat                       10.7      0.068   1
Peptidase_S6    Immunoglobulin A1 protease                6.0      0.097   1
FlpD            Methyl-viologen-reducing hydrogenase,     6.9       0.14   1
TOBE            TOBE domain                               8.0       0.25   1
I-set           Immunoglobulin I-set domain               7.1       0.26   5
NPCBM_assoc     NPCBM-associated, NEW3 domain of alph     7.1       0.28   2
fn3             Fibronectin type III domain               6.9       0.31   2
NIDO            Nidogen-like                              5.9       0.36   2
adh_short       short chain dehydrogenase                 5.5       0.48   1
Autotransporter Autotransporter beta-domain               4.9       0.55   2
SSI             Subtilisin inhibitor-like                 4.2       0.64   1
Lin0512_fam     Conserved hypothetical protein (Lin05     4.6       0.72   2
PPC             Bacterial pre-peptidase C-terminal do     5.1       0.91   1
DUF2328         Uncharacterized protein conserved in      2.5       0.95   1
TMP_2           Prophage tail length tape measure pro     3.0        1.6   1
DUF1522         Domain of Unknown Function (DUF1522)      3.4        1.9   2
TSGP1           Tick salivary peptide group 1             3.2        1.9   2
PKD             PKD domain                                3.1          2   2
SHR3_chaperone  ER membrane protein SH3                   3.0        2.3   1
SchA_CurD       SchA / CurD like protein                  1.8        2.3   1
FeoA            FeoA domain                               4.1        2.6   1
RES             RES domain                                2.3        2.9   1
THUMP           THUMP domain                              3.1        2.9   2
FlgD            Flagellar hook capping protein            2.0        3.7   1
DUF1927         Domain of unknown function (DUF1927)      3.4        3.7   2
Mycoplasma_MAA2 Mycoplasma arthritidis MAA2 repeat        1.7        4.5   1
CBM_15          Carbohydrate binding domain (family 1     0.5        4.5   1
Ald_Xan_dh_C2   Aldehyde oxidase and xanthine dehydro     0.2        4.6   1
Mid2            Mid2 like cell wall stress sensor         1.9        4.6   1
YbbR            YbbR-like protein                         2.3        5.3   1
Gly_reductase   Glycine/sarcosine/betaine reductase c    -0.7        5.5   1
Peptidase_U40   Peptidase U40                            -0.1        5.8   1
PNP_UDP_1       Phosphorylase superfamily                 1.3        5.9   1
Herpes_gG       Glycoprotein GG/GX                       -0.0        6.5   1
SpoVR           SpoVR like protein                       -0.7        6.6   1
DAG1            Dystroglycan (Dystrophin-associated g    -1.5        7.2   1
PA28_alpha      Proteasome activator pa28 alpha subun     2.5        8.1   2
Fil_haemagg     Haemagluttinin repeat                     1.9        8.3   2
DUF1615         Protein of unknown function (DUF1615)     0.1        8.6   1
DUF447          Protein of unknown function (DUF447)      1.4        8.8   1
Redoxin         Redoxin                                   1.1          9   1
Pertactin       Pertactin                                 1.6          9   1
FSA_C           Fragile site-associated protein C-ter    -2.1        9.1   1
DUF290          Transthyretin-like family                 1.2        9.3   1
DUF11           Domain of unknown function DUF11          2.3        9.6   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Redoxin           1/1      79   125 ..    63   109 ..     1.1        9
DUF447            1/1      93   104 ..     1    12 [.     1.4      8.8
adh_short         1/1      94   105 ..     1    12 [.     5.5     0.48
PNP_UDP_1         1/1      94   136 ..     1    47 [.     1.3      5.9
FlpD              1/1     121   135 ..    46    60 ..     6.9     0.14
Peptidase_U40     1/1     149   164 ..     1    16 [.    -0.1      5.8
DUF1615           1/1     157   170 ..   225   238 ..     0.1      8.6
SpoVR             1/1     204   211 ..     1     8 [.    -0.7      6.6
Peptidase_S6      1/1     220   239 ..     1    23 [.     6.0    0.097
Autotransporter   1/2     354   423 ..   206   296 .]     2.8      2.1
Gp5_C             1/4     381   404 ..     1    24 []     2.9      9.1
Mo-co_dimer       1/4     407   422 ..    48    63 ..     4.3      0.7
BNR               1/1     410   421 ..     1    12 []    10.7    0.068
NIDO              1/2     441   456 ..     1    17 [.     2.2      4.2
A2M_N             1/9     498   546 ..    24    86 ..     4.6     0.38
Cna_B             1/6     504   533 ..     2    26 ..     3.4      1.7
Gp5_C             2/4     528   535 ..    17    24 .]     1.0       35
Mo-co_dimer       2/4     530   554 ..    99   126 ..     1.6      4.4
HYR               1/6     534   566 ..    54    86 .]     6.1     0.34
NPCBM_assoc       1/2     539   553 ..    68    86 .]     2.6      5.5
Mid2              1/1     543   563 ..    27    49 ..     1.9      4.6
A2M_N             2/9     601   649 ..    24    86 ..    10.7   0.0068
DUF1927           1/2     603   615 ..    74    86 .]     0.1       30
Cna_B             2/6     607   636 ..     2    26 ..     4.9     0.59
PPC               1/1     615   639 ..    61    85 .]     5.1     0.91
Gp5_C             3/4     623   638 ..     9    24 .]     4.3      3.3
TMP_2             1/1     624   656 ..     1    33 [.     3.0      1.6
NPCBM_assoc       2/2     632   656 ..    57    86 .]     4.5      1.5
Mo-co_dimer       3/4     633   657 ..    99   126 ..     1.8      3.7
DUF1522           1/2     638   663 ..     1    26 [.     2.5      3.4
HYR               2/6     638   669 ..    55    86 .]     8.6    0.063
CBM_15            1/1     666   691 ..   140   166 .]     0.5      4.5
A2M_N             3/9     703   751 ..    24    86 ..    14.3  0.00063
Cna_B             3/6     709   738 ..     2    26 ..     3.9      1.2
DUF290            1/1     709   741 ..    12    49 ..     1.2      9.3
Gp5_C             4/4     717   740 ..     1    24 []     2.0       17
Pertactin         1/1     729   739 ..   129   139 .]     1.6        9
Mo-co_dimer       4/4     735   759 ..    99   126 ..     0.6      8.4
Gly_reductase     1/1     737   754 ..   413   430 .]    -0.7      5.5
HYR               3/6     740   771 ..    55    86 .]     6.2     0.33
fn3               1/2     776   793 ..     1    18 [.     3.7      2.6
Big_3             1/5     801   816 ..    54    70 .]     5.1      1.7
I-set             1/5     805   816 ..    85    96 .]     1.8      8.2
A2M_N             4/9     806   855 ..    26    87 ..     3.4     0.85
PA28_alpha        1/2     807   818 ..     1    13 [.     1.3       18
Lin0512_fam       1/2     810   817 ..   109   116 .]     2.3      3.7
He_PIG            1/5     838   859 ..    37    61 .]     0.8       19
HYR               4/6     840   872 ..    54    86 .]     0.4       17
A2M_N             5/9     886   956 ..     1    96 [.     1.1      3.7
Cna_B             4/6     910   932 ..     1    22 [.     0.3       15
Ald_Xan_dh_C2     1/1     912   939 ..   331   359 ..     0.2      4.6
THUMP             1/2     913   928 ..    82    97 .]     1.1       11
TSGP1             1/2     937   951 ..     1    15 [.     1.3      6.2
A2M_N             6/9     986  1036 ..     1    62 [.     5.9     0.16
FSA_C             1/1     986  1006 ..     1    21 [.    -2.1      9.1
Cna_B             5/6    1010  1036 ..     1    26 [.     2.1      4.1
fn3               2/2    1077  1094 ..     1    18 [.     3.3      3.4
SSI               1/1    1079  1104 ..     1    28 [.     4.2     0.64
Big_3             2/5    1102  1117 ..    54    70 .]     5.1      1.7
Fil_haemagg       1/2    1104  1166 ..     1    75 []     1.5       11
I-set             2/5    1106  1117 ..    85    96 .]     1.8      8.2
A2M_N             7/9    1107  1156 ..    26    87 ..     5.0     0.28
PA28_alpha        2/2    1108  1119 ..     1    13 [.     1.3       18
Lin0512_fam       2/2    1111  1118 ..   109   116 .]     2.3      3.7
He_PIG            2/5    1139  1160 ..    37    61 .]     1.8       10
A2M_N             8/9    1205  1257 ..    23    87 ..     1.5      2.8
Fil_haemagg       2/2    1205  1274 ..     1    75 []     0.4       22
Cadherin          1/4    1207  1217 ..    97   107 .]     1.3       12
I-set             3/5    1207  1218 ..    85    96 .]     0.2       24
Big_3             3/5    1210  1218 ..    62    70 .]     0.6       29
THUMP             2/2    1214  1229 ..    82    97 .]     2.0      6.2
TSGP1             2/2    1238  1252 ..     1    15 [.     1.9      4.5
Cadherin          2/4    1249  1275 ..    74   107 .]     1.9      7.6
He_PIG            3/5    1269  1324 ..     1    61 []     1.2       15
FeoA              1/1    1298  1332 ..    34    72 ..     4.1      2.6
Cna_B             6/6    1312  1334 ..     1    22 [.     1.0      9.1
SHR3_chaperone    1/1    1320  1329 ..     1    10 [.     3.0      2.3
Mycoplasma_MAA2   1/1    1359  1382 ..    50    73 .]     1.7      4.5
Autotransporter   2/2    1406  1482 ..   216   296 .]     2.1      3.2
Big_3             4/5    1406  1420 ..    55    70 .]     0.5       30
DUF1522           2/2    1406  1414 ..   110   118 .]     0.9      9.9
A2M_N             9/9    1409  1455 ..    25   124 ..     2.5      1.5
I-set             4/5    1409  1420 ..    85    96 .]     1.9      7.9
HYR               5/6    1442  1476 ..    52    86 .]     0.4       18
Y_Y_Y             1/1    1445  1477 ..    36    69 .]    14.5   0.0014
Cadherin          3/4    1450  1477 ..    73   107 .]     3.1      3.6
PKD               1/2    1450  1474 ..    68    92 .]     2.1      4.1
DUF11             1/1    1493  1525 ..     1    33 [.     2.3      9.6
DUF1927           2/2    1502  1514 ..    74    86 .]     3.3        4
I-set             5/5    1502  1512 ..    86    96 .]     1.2       12
TOBE              1/1    1512  1553 ..     1    45 [.     8.0     0.25
Big_3             5/5    1521  1538 ..    54    70 .]     0.4       32
FlgD              1/1    1521  1560 ..   104   155 .]     2.0      3.7
He_PIG            4/5    1529  1552 ..    38    61 .]     0.9       18
Herpes_gG         1/1    1531  1559 ..   404   449 ..    -0.0      6.5
HYR               6/6    1533  1567 ..    54    86 .]    12.1   0.0057
Cadherin          4/4    1539  1566 ..    73   107 .]     5.3     0.83
YbbR              1/1    1539  1567 ..    60    93 .]     2.3      5.3
DUF2328           1/1    1543  1567 ..   164   188 .]     2.5     0.95
SchA_CurD         1/1    1600  1610 ..     1    11 [.     1.8      2.3
NIDO              2/2    1658  1666 ..     1     9 [.     3.7      1.6
RES               1/1    1668  1690 ..   133   159 .]     2.3      2.9
DAG1              1/1    1695  1740 ..    45    92 ..    -1.5      7.2
He_PIG            5/5    1712  1759 ..     1    61 []    22.9    1e-05
PKD               2/2    1746  1770 ..    68    92 .]     1.0        9

Alignments of top-scoring domains:
Redoxin: domain 1 of 1, from 79 to 125: score 1.1, E = 9
                CS    HHHHHHTHHHHTS--SEEEEEESS-HHH.HHHHHHHTT.--SSEEEE
                   *->vPgyeeladklakGvdvvavvsvndpfvkmkawakalgkldnipvls
                      v gy  l+d  a+G++vv +   +   + m++wa+++++ d i+v s
  gi|1448984    79    VAGYQSLLDGIAAGTEVVLITGGDSGLAQMAQWAESHSGYDAIHVFS 125

                CS
                   <-*

  gi|1448984     -     -

DUF447: domain 1 of 1, from 93 to 104: score 1.4, E = 8.8
                   *->yEVIvtTksesg<-*
                      +EV+++T+++sg
  gi|1448984    93    TEVVLITGGDSG    104

adh_short: domain 1 of 1, from 94 to 105: score 5.5, E = 0.48
                CS    EEEEECTTSSHH
                   *->GTvLiTGGtGGL<-*
                       +vLiTGG +GL
  gi|1448984    94    EVVLITGGDSGL    105

PNP_UDP_1: domain 1 of 1, from 94 to 136: score 1.3, E = 5.9
                CS    SEEEEES-T....HHHH HHTT  .SSEEEEEEEETT......EEEE
                   *->kigiiggspLalleela.lael..veipleetpygpptvsgrggkfy
                      ++++i+g        la++a++ + +  ++ ++++++   g++g ++
  gi|1448984    94    EVVLITGGD----SGLAqMAQWaeSHSGYDAIHVFSH---GADGVLV 133

                CS EEE
                   tGt<-*
                   +G+
  gi|1448984   134 LGS    136

FlpD: domain 1 of 1, from 121 to 135: score 6.9, E = 0.14
                   *->lkAlekGADGVlVlG<-*
                      ++ +++GADGVlVlG
  gi|1448984   121    IHVFSHGADGVLVLG    135

Peptidase_U40: domain 1 of 1, from 149 to 164: score -0.1, E = 5.8
                   *->vqYsLRALGqKvRADG<-*
                      +q  L ALGq    DG
  gi|1448984   149    IQAGLAALGQALSTDG    164

DUF1615: domain 1 of 1, from 157 to 170: score 0.1, E = 8.6
                   *->GkkLaLDGDLlrYg<-*
                      G +L  DGDL++Yg
  gi|1448984   157    GQALSTDGDLMLYG    170

SpoVR: domain 1 of 1, from 204 to 211: score -0.7, E = 6.6
                   *->gsdwtfke<-*
                      g+dwt++e
  gi|1448984   204    GGDWTLEE    211

Peptidase_S6: domain 1 of 1, from 220 to 239: score 6.0, E = 0.097
                   *->lslssyWPslAalvridkidYQi<-*
                       sl+s   ++A++ +id++d+Qi
  gi|1448984   220    -SLASS--AYAGTLSIDNVDIQI    239

Autotransporter: domain 1 of 2, from 354 to 423: score 2.8, E = 2.1
                CS    EEECT.........TEEEE EEEEEEEE SS--- ------------
                   *->yrfslggsialgrrslppy.aglgvaye.fsgsr.vpvnsallaags
                      + f+++        ++ p++ ++ v  +++s + +++ ++
  gi|1448984   354    WDFNFS--------NTGPTgPTTTVSTAsLSADTgSSSSD------- 385

                CS .---------EEEEEEEEEEEEECTTEEEEEEEEEE....TTEEEEE
                   lfgvasgtpldrtalslgaGlelklgsnlslflnysaefgsqlsdng<-*
                     +++    ++++++s +++++l  g++++++++++    s++sd +
  gi|1448984   386 --WITG---TASQTVSGTLSANLGAGEKVEVSYDGG----STWSDAT    423

Gp5_C: domain 1 of 4, from 381 to 404: score 2.9, E = 9.1
                CS    S-EEEEESS-EEEEESSEEEEEES
                   *->GnesltVkGnrtvtVgGnqTtsVg<-*
                       + s+ + G++ +tV G+ + ++g
  gi|1448984   381    SSSSDWITGTASQTVSGTLSANLG    404

Mo-co_dimer: domain 1 of 4, from 407 to 422: score 4.3, E = 0.7
                CS    EEEEEESSTTSS-EE-
                   *->tRVEVSLDgGksWrlA<-*
                      ++VEVS DgG +W  A
  gi|1448984   407    EKVEVSYDGGSTWSDA    422

BNR: domain 1 of 1, from 410 to 421: score 10.7, E = 0.068
                CS    EEESSTTSSEEE
                   *->yyStDgGkTWsk<-*
                       +S+DgG TWs
  gi|1448984   410    EVSYDGGSTWSD    421

NIDO: domain 1 of 2, from 441 to 456: score 2.2, E = 4.2
                   *->fNTFQavLatdkdgsaT<-*
                      +NTFQa + ++ +gs+T
  gi|1448984   441    ANTFQARVTDT-NGSST    456

A2M_N: domain 1 of 9, from 498 to 546: score 4.6, E = 0.38
                CS    EECSSEEE-EEEEE............ ....S-SS-EEEEEEE...E
                   *->lrggpvegvcVqllsrnnqvsdcggk.latgtTDadGevtftvslsl
                      ++g +++++ V l+      +++g++++++ t D+ G++t+t
  gi|1448984   498    FSGTAEANAIVKLY------DTDGSTeIGSVTADGSGNWTITT---- 534

                CS ESSS--SB---EEEE-G
                   dhplrgtlseapvllta<-*
                        ++ls  ++++ta
  gi|1448984   535 -----SVLSAGAHTITA    546

Cna_B: domain 1 of 6, from 504 to 533: score 3.4, E = 1.7
                CS    TT-EEEEEETTEEE     E--TTSEEEEE
                   *->eGAeftLldkdgnv.....tTdenGkytft<-*
                      ++A ++L+d dg+++ ++ t d +G+ t+t
  gi|1448984   504    ANAIVKLYDTDGSTeigsvTADGSGNWTIT    533

Gp5_C: domain 2 of 4, from 528 to 535: score 1.0, E = 35
                CS    SEEEEEES
                   *->GnqTtsVg<-*
                      Gn+T++ +
  gi|1448984   528    GNWTITTS    535

Mo-co_dimer: domain 2 of 4, from 530 to 554: score 1.6, E = 4.4
                CS    EEEEEECCC..HHTESEEEEEEEETT--
                   *->WsLdvpvsegQLlgakeImvRAvDesmn<-*
                      W ++  v     +ga++I+++A+D ++n
  gi|1448984   530    WTITTSVLS---AGAHTITAKATDTAGN    554

HYR: domain 1 of 6, from 534 to 566: score 6.1, E = 0.34
                   *->GdfFpvGEettVtYtatDnaGNe..AdsCtFtVtV<-*
                      ++ ++ G  +t+t+ atD aGN++ A s  + Vt+
  gi|1448984   534    TSVLSAG-AHTITAKATDTAGNQsaA-STGLSVTI    566

NPCBM_assoc: domain 1 of 2, from 539 to 553: score 2.6, E = 5.5
                   *->AGdPYHPYtltasAsYtvs<-*
                      AG+    +t+ta+A+ t++
  gi|1448984   539    AGA----HTITAKATDTAG    553

Mid2: domain 1 of 1, from 543 to 563: score 1.9, E = 4.6
                   *->TYTPtaTatkspsnksghhtGLS<-*
                      T+T+ aT    ++n s  +tGLS
  gi|1448984   543    TITAKATD--TAGNQSAASTGLS    563

A2M_N: domain 2 of 9, from 601 to 649: score 10.7, E = 0.0068
                CS    EECSSEEE-EEEEE............ ....S-SS-EEEEEEE...E
                   *->lrggpvegvcVqllsrnnqvsdcggk.latgtTDadGevtftvslsl
                      ++g ++++++V l+      +++g ++++++t D+ G++t+tv
  gi|1448984   601    FSGTAEANATVKLY------DTDGTTeIGSATADGSGNWTITV---- 637

                CS ESSS--SB---EEEE-G
                   dhplrgtlseapvllta<-*
                        +tls  ++++ta
  gi|1448984   638 -----STLSAGAHTITA    649

DUF1927: domain 1 of 2, from 603 to 615: score 0.1, E = 30
                CS    TTEE.EEEEEEES
                   *->GkaklgaaLaVYd<-*
                      G+a+  a++++Yd
  gi|1448984   603    GTAEANATVKLYD    615

Cna_B: domain 2 of 6, from 607 to 636: score 4.9, E = 0.59
                CS    TT-EEEEEETTEEE     E--TTSEEEEE
                   *->eGAeftLldkdgnv.....tTdenGkytft<-*
                      ++A+++L+d dg+++ ++ t d +G+ t+t
  gi|1448984   607    ANATVKLYDTDGTTeigsaTADGSGNWTIT    636

PPC: domain 1 of 1, from 615 to 639: score 5.1, E = 0.91
                CS    ECCTTEEEEEECC.-SEEEEEEEEE
                   *->dnggsdelisftapeaGtYyirVyg<-*
                      d++g  e +s+ta  +G++ i+V++
  gi|1448984   615    DTDGTTEIGSATADGSGNWTITVST    639

Gp5_C: domain 3 of 4, from 623 to 638: score 4.3, E = 3.3
                CS    S-EEEEESSEEEEEES
                   *->GnrtvtVgGnqTtsVg<-*
                      G++t +  Gn+T++V+
  gi|1448984   623    GSATADGSGNWTITVS    638

TMP_2: domain 1 of 1, from 624 to 656: score 3.0, E = 1.6
                   *->srqelaaqkagisvGqkaAAaRmlpaqftdlat<-*
                      s+++  +++++i+v  ++A a +++a  td+a+
  gi|1448984   624    SATADGSGNWTITVSTLSAGAHTITAKATDVAG    656

NPCBM_assoc: domain 2 of 2, from 632 to 656: score 4.5, E = 1.5
                   *->twkVtpPadAaAGdPYHPYtltasAsYtvs<-*
                      +w++t+ + +a G+    +t+ta+A+ +++
  gi|1448984   632    NWTITVSTLSA-GA----HTITAKATDVAG    656

Mo-co_dimer: domain 3 of 4, from 633 to 657: score 1.8, E = 3.7
                CS    EEEEEECCC..HHTESEEEEEEEETT--
                   *->WsLdvpvsegQLlgakeImvRAvDesmn<-*
                      W ++v       +ga++I+++A+D ++n
  gi|1448984   633    WTITVSTLS---AGAHTITAKATDVAGN    657

DUF1522: domain 1 of 2, from 638 to 663: score 2.5, E = 3.4
                   *->sTLtVNGKTITFknaaaPaaaavptG<-*
                      sTL+   +TIT k++++ + ++v++G
  gi|1448984   638    STLSAGAHTITAKATDVAGNQDVASG    663

HYR: domain 2 of 6, from 638 to 669: score 8.6, E = 0.063
                   *->dfFpvGEettVtYtatDnaGNe..AdsCtFtVtV<-*
                      ++++ G  +t+t+ atD aGN++ A s+ + Vt+
  gi|1448984   638    STLSAG-AHTITAKATDVAGNQdvA-SGGLSVTI    669

CBM_15: domain 1 of 1, from 666 to 691: score 0.5, E = 4.5
                CS    EEEE EEEEE-.............----
                   *->SVTv.TLAqeAssssAqssstGsvYSAN<-*
                      SVT++T A++A   sA   s Gs    N
  gi|1448984   666    SVTIdTAAPAA--PSAPDMSAGSDSGTN    691

A2M_N: domain 3 of 9, from 703 to 751: score 14.3, E = 0.00063
                CS    EECSSEEE-EEEEE............ ....S-SS-EEEEEEE...E
                   *->lrggpvegvcVqllsrnnqvsdcggk.latgtTDadGevtftvslsl
                      ++g ++++++V+l+      +++g++ l+tgt D+ G++++t+
  gi|1448984   703    FTGTAEANATVTLY------DTDGSTvLGTGTADGSGNWSITA---- 739

                CS ESSS--SB---EEEE-G
                   dhplrgtlseapvllta<-*
                        +tls  +++lta
  gi|1448984   740 -----STLSAGAHTLTA    751

Cna_B: domain 3 of 6, from 709 to 738: score 3.9, E = 1.2
                CS    TT-EEEEEETTEEE     E--TTSEEEEE
                   *->eGAeftLldkdgnv.....tTdenGkytft<-*
                      ++A++tL+d dg++  +++t d +G+ ++t
  gi|1448984   709    ANATVTLYDTDGSTvlgtgTADGSGNWSIT    738

DUF290: domain 1 of 1, from 709 to 741: score 1.2, E = 9.3
                   *->anvkVkLyekdtgfidpDdlLdetkTdsdGeFrLsGst<-*
                      an++V+Ly+ d       + L++++ d  G+ ++++st
  gi|1448984   709    ANATVTLYDTDG--S---TVLGTGTADGSGNWSITAST    741

Gp5_C: domain 4 of 4, from 717 to 740: score 2.0, E = 17
                CS    S-EEEEESS-EEEEESSEEEEEES
                   *->GnesltVkGnrtvtVgGnqTtsVg<-*
                      + +  tV G++t +  Gn++++ +
  gi|1448984   717    DTDGSTVLGTGTADGSGNWSITAS    740

Pertactin: domain 1 of 1, from 729 to 739: score 1.6, E = 9
                   *->AdgNtnWsLta<-*
                      Adg +nWs ta
  gi|1448984   729    ADGSGNWSITA    739

Mo-co_dimer: domain 4 of 4, from 735 to 759: score 0.6, E = 8.4
                CS    EEEEEECCC..HHTESEEEEEEEETT--
                   *->WsLdvpvsegQLlgakeImvRAvDesmn<-*
                      Ws+++       +ga++++++A+D ++n
  gi|1448984   735    WSITASTLS---AGAHTLTAKATDAAGN    759

Gly_reductase: domain 1 of 1, from 737 to 754: score -0.7, E = 5.5
                   *->itGaTnelGfsklsakgy<-*
                      it++T   G ++l+ak+
  gi|1448984   737    ITASTLSAGAHTLTAKAT    754

HYR: domain 3 of 6, from 740 to 771: score 6.2, E = 0.33
                   *->dfFpvGEettVtYtatDnaGNeAdsCt..FtVtV<-*
                      ++++ G  +t t+ atD+aGN++   ++++ Vt+
  gi|1448984   740    STLSAG-AHTLTAKATDAAGNQG-VAStgLSVTI    771

fn3: domain 1 of 2, from 776 to 793: score 3.7, E = 2.6
                CS    ----CEEEEEEECTTEEE
                   *->PsaPtnltvtdvtstslt<-*
                      P aPt lt+++ t +s+t
  gi|1448984   776    PAAPTALTISSDTGNSAT    793

Big_3: domain 1 of 5, from 801 to 816: score 5.1, E = 1.7
                   *->TytYkGqpvtatftVtV<-*
                      T+t+ G +++a++ V+V
  gi|1448984   801    TLTIGG-SAEANASVEV    816

I-set: domain 1 of 5, from 805 to 816: score 1.8, E = 8.2
                CS    TEEEEEEEEEEE
                   *->aGeaeasaeLtV<-*
                      +G+aea a+++V
  gi|1448984   805    GGSAEANASVEV    816

A2M_N: domain 4 of 9, from 806 to 855: score 3.4, E = 0.85
                CS    CSSEEE-EEEEE............ ....S-SS-EEEEEEE...EES
                   *->ggpvegvcVqllsrnnqvsdcggk.latgtTDadGevtftvslsldh
                      g ++++++V+++         +g +++t t ++ G ++f+
  gi|1448984   806    GSAEANASVEVF--------KDGVsIGTTTANGAGAWSFDY------ 838

                CS SS --SB---EEEE-GG
                   pl.rgtlseapvlltar<-*
                   ++++ t ++ +++ +a+
  gi|1448984   839 TGtTLTEGSYAFTAIAT    855

PA28_alpha: domain 1 of 2, from 807 to 818: score 1.3, E = 18
                CS    --HHHHHHHHHHH
                   *->varEakkKVDvFR<-*
                       + Ea++ V+vF+
  gi|1448984   807    -SAEANASVEVFK    818

Lin0512_fam: domain 1 of 2, from 810 to 817: score 2.3, E = 3.7
                   *->AnAaVeVg<-*
                      AnA+VeV+
  gi|1448984   810    ANASVEVF    817

He_PIG: domain 1 of 5, from 838 to 859: score 0.8, E = 19
                   *->itGtPtptvqpGsytftvtatdgsg<-*
                      +tGt  +    Gsy ft  atd +g
  gi|1448984   838    YTGTTLTE---GSYAFTAIATDVAG    859

HYR: domain 4 of 6, from 840 to 872: score 0.4, E = 17
                   *->GdfFpvGEettVtYtatDnaGN..eAdsCtFtVtV<-*
                      G ++++G ++  t++atD aGN ++A s t  VtV
  gi|1448984   840    GTTLTEG-SYAFTAIATDVAGNvgTA-STTKAVTV    872

A2M_N: domain 5 of 9, from 886 to 956: score 1.1, E = 3.7
                CS    XXXXXXX . XXXX--EEEEEEESEEECSSEEE-EEEEE........
                   *->vsdlgls.a.akqgedgylvfvpsllrggpvegvcVqllsrnnqvsd
                       sd g+ +a+a ++       ++ + +g + ++++V+++
  gi|1448984   886    SSDTGVDgAdAITTD------TTLVISGTAAANITVEVF-------- 918

                CS .... ....S-SS-EEEEEEE...EESSS--SB---EEEE-GGGTT..EE
                   cggk.latgtTDadGevtftvslsldhplrgtlseapvlltarnggdaqa
                    +g +++t t D++G ++f++             + ++l +a++ +  +a
  gi|1448984   919 KDGVsIGTTTADGTGAWSFDH-------------TGTTLALATHAF--TA 953

                CS  -E
                   .vt<-*
                   +++
  gi|1448984   954 kAQ    956

Cna_B: domain 4 of 6, from 910 to 932: score 0.3, E = 15
                CS    -TT-EEEEEETTEEE E--TTSE
                   *->LeGAeftLldkdgnv.tTdenGk<-*
                       +++++++++++ +++tT ++G+
  gi|1448984   910    AANITVEVFKDGVSIgTTTADGT    932

Ald_Xan_dh_C2: domain 1 of 1, from 912 to 939: score 0.2, E = 4.6
                CS    EEEEEEEEEEESEEEEEEESCTTCCG.EE
                   *->NrgnswrkrGiglvptkygsgfgapplnq<-*
                      N++ +++k+G++++ t+ ++g+ga+  ++
  gi|1448984   912    NITVEVFKDGVSIG-TTTADGTGAWSFDH    939

THUMP: domain 1 of 2, from 913 to 928: score 1.1, E = 11
                CS    EEEEEETTEEEEES--
                   *->vhvEiikdkayisidr<-*
                      + vE++kd + i++ +
  gi|1448984   913    ITVEVFKDGVSIGTTT    928

TSGP1: domain 1 of 2, from 937 to 951: score 1.3, E = 6.2
                   *->mgltGitLvLvslAF<-*
                       + tG+tL L+  AF
  gi|1448984   937    FDHTGTTLALATHAF    951

A2M_N: domain 6 of 9, from 986 to 1036: score 5.9, E = 0.16
                CS    XXXXXXX . XXXX--EEEEEEESEEECSSEEE-EEEEE........
                   *->vsdlgls.a.akqgedgylvfvpsllrggpvegvcVqllsrnnqvsd
                       +d g s+++ k++       ++ +l+g ++++++V ++
  gi|1448984   986    STDSGSSnSdGKTTD------TTLILTGSAPANATVLVY-------- 1018

                CS .... ....S-SS-EEEE
                   cggk.latgtTDadGevt<-*
                   ++g +++t t D++G +t
  gi|1448984  1019 RDGVsIGTTTADGTGAWT    1036

FSA_C: domain 1 of 1, from 986 to 1006: score -2.1, E = 9.1
                   *->sSgsgssesnQkkpWeTLVlf<-*
                      s+ sgss s  k+  +TL+l+
  gi|1448984   986    STDSGSSNSDGKTTDTTLILT    1006

Cna_B: domain 5 of 6, from 1010 to 1036: score 2.1, E = 4.1
                CS    -TT-EEEEEETTEEE E--TTSEEEEE
                   *->LeGAeftLldkdgnv.tTdenGkytft<-*
                      +++A++ ++ ++ +++tT ++G+   t
  gi|1448984  1010    PANATVLVYRDGVSIgTTTADGTGAWT    1036

fn3: domain 2 of 2, from 1077 to 1094: score 3.3, E = 3.4
                CS    ----CEEEEEEECTTEEE
                   *->PsaPtnltvtdvtstslt<-*
                      P aP+ lt+++ t +s+t
  gi|1448984  1077    PAAPSALTISSDTGNSAT    1094

SSI: domain 1 of 1, from 1079 to 1104: score 4.2, E = 0.64
                CS    ----EEEEEEEESSSTTSS--SEEEEEE
                   *->YAPSALVLTvGqGdsaAtagvqRAVTLt<-*
                       APSAL ++   G+ +At g+   +TLt
  gi|1448984  1079    -APSALTISSDTGN-SATDGITSDTTLT    1104

Big_3: domain 2 of 5, from 1102 to 1117: score 5.1, E = 1.7
                   *->TytYkGqpvtatftVtV<-*
                      T+t+ G +++a++ V+V
  gi|1448984  1102    TLTIGG-SAEANASVEV    1117

Fil_haemagg: domain 1 of 2, from 1104 to 1166: score 1.5, E = 11
                CS    EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE....
                   *->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtliag
                      +++G+ + na+         +g    +++ + t+a  +  +gt++a
  gi|1448984  1104    TIGGSAEANAS----VEVFKDGVSIGTATADGTGAWSFDYTGTTLAE 1146

                CS ...............EEEEESS-EEEEE
                   gdlllaagalrnggdltltaaGdLdnsg<-*
                   g    +a        ++ + aG++  ++
  gi|1448984  1147 GSYAFTA--------IATDVAGNVGTAS    1166

I-set: domain 2 of 5, from 1106 to 1117: score 1.8, E = 8.2
                CS    TEEEEEEEEEEE
                   *->aGeaeasaeLtV<-*
                      +G+aea a+++V
  gi|1448984  1106    GGSAEANASVEV    1117

A2M_N: domain 7 of 9, from 1107 to 1156: score 5.0, E = 0.28
                CS    CSSEEE-EEEEE............ ....S-SS-EEEEEEE...EES
                   *->ggpvegvcVqllsrnnqvsdcggk.latgtTDadGevtftvslsldh
                      g ++++++V+++         +g +++t+t D++G ++f+
  gi|1448984  1107    GSAEANASVEVF--------KDGVsIGTATADGTGAWSFDY------ 1139

                CS SS --SB---EEEE-GG
                   pl.rgtlseapvlltar<-*
                   ++++   ++ +++ +a+
  gi|1448984  1140 TGtTLAEGSYAFTAIAT    1156

PA28_alpha: domain 2 of 2, from 1108 to 1119: score 1.3, E = 18
                CS    --HHHHHHHHHHH
                   *->varEakkKVDvFR<-*
                       + Ea++ V+vF+
  gi|1448984  1108    -SAEANASVEVFK    1119

Lin0512_fam: domain 2 of 2, from 1111 to 1118: score 2.3, E = 3.7
                   *->AnAaVeVg<-*
                      AnA+VeV+
  gi|1448984  1111    ANASVEVF    1118

He_PIG: domain 2 of 5, from 1139 to 1160: score 1.8, E = 10
                   *->itGtPtptvqpGsytftvtatdgsg<-*
                      +tGt       Gsy ft  atd +g
  gi|1448984  1139    YTGTTLAE---GSYAFTAIATDVAG    1160

A2M_N: domain 8 of 9, from 1205 to 1257: score 1.5, E = 2.8
                CS    EEECSSEEE-EEEEE............ ....S-SS-EEEEEEE...
                   *->llrggpvegvcVqllsrnnqvsdcggk.latgtTDadGevtftvsls
                      + +g + ++++V+++         +g +++t t D++G ++f++
  gi|1448984  1205    VISGTATANITVEVF--------KDGAsIGTTTADGTGAWSFDH--- 1240

                CS EESSS --SB---EEEE-GG
                   ldhpl.rgtlseapvlltar<-*
                      ++++  l++ +++  a+
  gi|1448984  1241 ---TGtTLALATYAFTAKAQ    1257

Fil_haemagg: domain 2 of 2, from 1205 to 1274: score 0.4, E = 22
                CS    EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE....
                   *->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtliag
                      v++G+ t n++         +g+   + + + t+a  +  +gt++a
  gi|1448984  1205    VISGTATANIT----VEVFKDGASIGTTTADGTGAWSFDHTGTTLAL 1247

                CS ...............EEEEESS-EEEEE
                   gdlllaagalrnggdltltaaGdLdnsg<-*
                   ++   +a+a++++g  + +a+ +L+++
  gi|1448984  1248 ATYAFTAKAQDSAG-NASAASTALSVQV    1274

Cadherin: domain 1 of 4, from 1207 to 1217: score 1.3, E = 12
                CS    -EEEE--EEE-
                   *->sstatvtitVl<-*
                      s+tat +itV+
  gi|1448984  1207    SGTATANITVE    1217

I-set: domain 3 of 5, from 1207 to 1218: score 0.2, E = 24
                CS    TEEEEEEEEEEE
                   *->aGeaeasaeLtV<-*
                      +G+a+a ++++V
  gi|1448984  1207    SGTATANITVEV    1218

Big_3: domain 3 of 5, from 1210 to 1218: score 0.6, E = 29
                   *->vtatftVtV<-*
                      +ta++tV+V
  gi|1448984  1210    ATANITVEV    1218

THUMP: domain 2 of 2, from 1214 to 1229: score 2.0, E = 6.2
                CS    EEEEEETTEEEEES--
                   *->vhvEiikdkayisidr<-*
                      + vE++kd a i++ +
  gi|1448984  1214    ITVEVFKDGASIGTTT    1229

TSGP1: domain 2 of 2, from 1238 to 1252: score 1.9, E = 4.5
                   *->mgltGitLvLvslAF<-*
                       + tG+tL L+  AF
  gi|1448984  1238    FDHTGTTLALATYAF    1252

Cadherin: domain 2 of 4, from 1249 to 1275: score 1.9, E = 7.6
                CS    -B--EEE----.........S---EEEE--EEE-
                   *->eYeLtveAtDadpllasgggpplsstatvtitVl<-*
                      +Y +t +A+D+       +g +  + + + ++V
  gi|1448984  1249    TYAFTAKAQDS-------AGNASAASTALSVQVV    1275

He_PIG: domain 3 of 5, from 1269 to 1324: score 1.2, E = 15
                   *->tytlTkpsdgslasysttpggggLPsGLtL..............dss
                      + ++            +   +++ P+GL +++++++++++++ ++ +
  gi|1448984  1269    ALSV------------QVVVAPAAPTGLAIstdssgssnsdgitSDT 1303

                   tGritGtPtptvqpGsytftvtatdgsg<-*
                   t++++Gt          ++tvt++  ++
  gi|1448984  1304 TLIVSGT-------APLNATVTIYKDGV    1324

FeoA: domain 1 of 1, from 1298 to 1332: score 4.1, E = 2.6
                CS    T-STTSEEEEEEETT.....EEEEEETTEEEES-HHHHH
                   *->GivpGtevtvirkapalGgdplivevggtrlaLrkgeAs<-*
                      Gi+ +t++ v + ap l+ ++++++ +g  ++++   A+
  gi|1448984  1298    GITSDTTLIVSGTAP-LN-ATVTIYKDG--VSIGTATAD    1332

Cna_B: domain 6 of 6, from 1312 to 1334: score 1.0, E = 9.1
                CS    -TT-EEEEEETTEEE E--TTSE
                   *->LeGAeftLldkdgnv.tTdenGk<-*
                      + +A++t+++++ +++t  ++G+
  gi|1448984  1312    PLNATVTIYKDGVSIgTATADGT    1334

SHR3_chaperone: domain 1 of 1, from 1320 to 1329: score 3.0, E = 2.3
                   *->ykdfcsVGsA<-*
                      ykd++s+G+A
  gi|1448984  1320    YKDGVSIGTA    1329

Mycoplasma_MAA2: domain 1 of 1, from 1359 to 1382: score 1.7, E = 4.5
                   *->tLKsKDGAvsKAFEKtiDGFKAEA<-*
                      tL  +D Avs A   t+D     A
  gi|1448984  1359    TLNGQDSAVSSALNVTVDTTAPSA    1382

Autotransporter: domain 2 of 2, from 1406 to 1482: score 2.1, E = 3.2
                CS    ....TEEEEEEEEEEEE SS--- ------ ---- --.--------
                   *->lgrrslppyaglgvaye.fsgsr.vpvnsa.llaa.gslfgvasgtp
                      l   +++++a++++  e f++ ++  +++a++++a ++ + +++++
  gi|1448984  1406    L---TISGTAEANATVEvFKDGVsIGTTTAdGAGAwSFDHSGTTLA- 1448

                CS -EEEEEEEEEEEEECTTEEEEEEEEEE....TTEEEEE
                   ldrtalslgaGlelklgsnlslflnysaefgsqlsdng<-*
                   l++ a+ ++a   + + s +s +l+++     +++d+
  gi|1448984  1449 LGNYAFTAKAKDAAGNESAASTSLSVR----VTIDDTA    1482

Big_3: domain 4 of 5, from 1406 to 1420: score 0.5, E = 30
                   *->ytYkGqpvtatftVtV<-*
                      +t+ G  ++a++tV+V
  gi|1448984  1406    LTISG-TAEANATVEV    1420

DUF1522: domain 2 of 2, from 1406 to 1414: score 0.9, E = 9.9
                   *->LsItGtgdl<-*
                      L+I+Gt+ +
  gi|1448984  1406    LTISGTAEA    1414

A2M_N: domain 9 of 9, from 1409 to 1455: score 2.5, E = 1.5
                CS    ECSSEEE-EEEEE............ ....S-SS-EEEEEEE...EE
                   *->rggpvegvcVqllsrnnqvsdcggk.latgtTDadGevtftvslsld
                      +g ++++++V+++         +g +++t t D+ G ++f++
  gi|1448984  1409    SGTAEANATVEVF--------KDGVsIGTTTADGAGAWSFDH----- 1442

                CS SSS--SB---EEEE-GGGTT..EE-EEEB--.......------------
                   hplrgtlseapvlltarnggdaqavtleidlfrCqaspdffflplrgrgd
                                                           + l l   g+
  gi|1448984  1443 --------------------------------------SGTTLAL---GN 1451

                CS EEEE
                   yald<-*
                   ya++
  gi|1448984  1452 YAFT    1455

I-set: domain 4 of 5, from 1409 to 1420: score 1.9, E = 7.9
                CS    TEEEEEEEEEEE
                   *->aGeaeasaeLtV<-*
                      +G+aea a+++V
  gi|1448984  1409    SGTAEANATVEV    1420

HYR: domain 5 of 6, from 1442 to 1476: score 0.4, E = 18
                   *->qpGdfFpvGEettVtYtatDnaGNe..AdsCtFtVtV<-*
                      ++G ++  G  +  t+ a D+aGNe+ A s ++ V+V
  gi|1448984  1442    HSGTTLALG-NYAFTAKAKDAAGNEsaA-STSLSVRV    1476

Y_Y_Y: domain 1 of 1, from 1445 to 1477: score 14.5, E = 0.0014
                   *->tnLppGkYtikvkakdkdgnwsyddiasltftvl<-*
                      t L  G+Y +++kakd  gn+s  + +sl+++v
  gi|1448984  1445    TTLALGNYAFTAKAKDAAGNESAAS-TSLSVRVT    1477

Cadherin: domain 3 of 4, from 1450 to 1477: score 3.1, E = 3.6
                CS    S-B--EEE----.........S---EEEE--EEE-
                   *->geYeLtveAtDadpllasgggpplsstatvtitVl<-*
                      g Y +t +A+Da       +g    + +++ + V+
  gi|1448984  1450    GNYAFTAKAKDA-------AGNESAASTSLSVRVT    1477

PKD: domain 1 of 2, from 1450 to 1474: score 2.1, E = 4.1
                CS    EEEEEEEEEEETTCEEEEEEEEEEE
                   *->GtYtVtLtvsngvgsasattttvtV<-*
                      G+Y  t ++++++g+ sa +t++ V
  gi|1448984  1450    GNYAFTAKAKDAAGNESAASTSLSV    1474

DUF11: domain 1 of 1, from 1493 to 1525: score 2.3, E = 9.6
                   *->ttgatddlppnnnanatvtvtpvadlvitktvs<-*
                       t++t+++++++ a atv    +a+l+ t+tv+
  gi|1448984  1493    GTSTTVPVTGTAEAEATVKIYDGATLLGTVTVD    1525

DUF1927: domain 2 of 2, from 1502 to 1514: score 3.3, E = 4
                CS    TTEE.EEEEEEES
                   *->GkaklgaaLaVYd<-*
                      G+a+ +a++++Yd
  gi|1448984  1502    GTAEAEATVKIYD    1514

I-set: domain 5 of 5, from 1502 to 1512: score 1.2, E = 12
                CS    EEEEEEEEEEE
                   *->GeaeasaeLtV<-*
                      G+aea+a++++
  gi|1448984  1502    GTAEAEATVKI    1512

TOBE: domain 1 of 1, from 1512 to 1553: score 8.0, E = 0.25
                CS    ESTSEEEEEEEEEEEE-SSEEEEEEEETTS.EEEEEEEHE-HHHH
                   *->ssarNqlpGtVtvveplGveteVrvdlgggqtltAritrldrsae<-
                      + + ++l GtVtv e++ ++ + ++++g ++ ltA+ t   ++ +
  gi|1448984  1512    IYDGATLLGTVTVDEDGNWTYTATLAVGSHT-LTATATD--AAGN   1553

                CS
                   *

  gi|1448984     -   -

Big_3: domain 5 of 5, from 1521 to 1538: score 0.4, E = 32
                   *->TytYkGq.pvtatftVtV<-*
                      T+t ++++++t t+t  V
  gi|1448984  1521    TVTVDEDgNWTYTATLAV    1538

FlgD: domain 1 of 1, from 1521 to 1560: score 2.0, E = 3.7
                   *->tivyldgggggetGsvsggvevgLpsaAdevtvtikDaaGqvvnvel
                      t v++d++g       +++++ +L+ ++ ++t t +DaaG+v    +
  gi|1448984  1521    T-VTVDEDG-------NWTYTATLAVGSHTLTATATDAAGNV----S 1555

                   Vrtid<-*
                   V++ +
  gi|1448984  1556 VASAP    1560

He_PIG: domain 4 of 5, from 1529 to 1552: score 0.9, E = 18
                   *->tGtPtptvqpGsytftvtatdgsg<-*
                      ++t t t + Gs t t tatd++g
  gi|1448984  1529    NWTYTATLAVGSHTLTATATDAAG    1552

Herpes_gG: domain 1 of 1, from 1531 to 1559: score -0.0, E = 6.5
                   *->tqAAtvAvGPqsLligeaatdeaesSaalaaaaaedavGleilaqP<
                      t  At AvG+++L+++                 a+da+G  ++a++
  gi|1448984  1531    TYTATLAVGSHTLTAT-----------------ATDAAGNVSVASA  1559

                   -*

  gi|1448984     -    -

HYR: domain 6 of 6, from 1533 to 1567: score 12.1, E = 0.0057
                   *->GdfFpvGEettVtYtatDnaGN....eAdsCtFtVtV<-*
                      ++++ vG ++t t+tatD+aGN +  +A + t+t+t
  gi|1448984  1533    TATLAVG-SHTLTATATDAAGNvsvaSA-PATVTITA    1567

Cadherin: domain 4 of 4, from 1539 to 1566: score 5.3, E = 0.83
                CS    S-B--EEE----.........S---EEEE--EEE-
                   *->geYeLtveAtDadpllasgggpplsstatvtitVl<-*
                      g ++Lt  AtDa       +g    + a+ t+t++
  gi|1448984  1539    GSHTLTATATDA-------AGNVSVASAPATVTIT    1566

YbbR: domain 1 of 1, from 1539 to 1567: score 2.3, E = 5.3
                   *->GehsvsvtvsllapdgnvevevnvtiPstvtVti<-*
                      G+h+++ t+++ a+++ v        P+tvt+t
  gi|1448984  1539    GSHTLTATATDAAGNVSVASA-----PATVTITA    1567

DUF2328: domain 1 of 1, from 1543 to 1567: score 2.5, E = 0.95
                   *->lllLAreaGgtisveiteeavvlsa<-*
                      l + A +a g +sv+ ++++v+++a
  gi|1448984  1543    LTATATDAAGNVSVASAPATVTITA    1567

SchA_CurD: domain 1 of 1, from 1600 to 1610: score 1.8, E = 2.3
                   *->VkPLescVRdt<-*
                      V PL + VRdt
  gi|1448984  1600    VAPLVTIVRDT    1610

NIDO: domain 2 of 2, from 1658 to 1666: score 3.7, E = 1.6
                   *->fNTFQavLa<-*
                      +N+FQ++La
  gi|1448984  1658    GNSFQVALA    1666

RES: domain 1 of 1, from 1668 to 1690: score 2.3, E = 2.9
                   *->rvPhpggtlNlvlfpdhPdalailrvg<-*
                      r  ++gg + lv++   P ++ai++ g
  gi|1448984  1668    R--SAGGGDALVIN--APMRDAIVAEG    1690

DAG1: domain 1 of 1, from 1695 to 1740: score -1.5, E = 7.2
                CS    XXXXXXXXXXXXX..XXXXXXXXXXX..X..XXXXXXXXXXXXXXXX
                   *->lhvptellassedqGiikiseadKdgheLkapswLhwdadsrtLqGL
                      +++p +++a      ++ ++++  +g  L  p w+ ++   +t +G
  gi|1448984  1695    VTIPADTFAHTKADAVVSLTATRANGAAL--PGWMAFNPSTGTFEGT 1739

                CS X
                   P<-*
                   P
  gi|1448984  1740 P    1740

He_PIG: domain 5 of 5, from 1712 to 1759: score 22.9, E = 1e-05
                   *->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
                      + t+            t   g +LP ++ +++stG++ GtP+p+
  gi|1448984  1712    SLTA------------TRANGAALPGWMAFNPSTGTFEGTPPPGFR- 1745

                   Gsytftvtatdgsg<-*
                   G+  ++v a d  g
  gi|1448984  1746 GEVVVRVIARDNDG    1759

PKD: domain 2 of 2, from 1746 to 1770: score 1.0, E = 9
                CS    EEEEEEEEEEETTCEEEEEEEEEEE
                   *->GtYtVtLtvsngvgsasattttvtV<-*
                      G+  V++ + ++ g  +++t  ++V
  gi|1448984  1746    GEVVVRVIARDNDGRQVVQTFKIVV    1770

//