hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 145955504.fa
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Query sequence: gi|145955504|ref|ZP_01804505.1|
Accession: [none]
Description: hypothetical protein CdifQ_04000702 [Clostridium difficile QCD-32g58]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CW_binding_1 Putative cell wall binding repeat 164.6 3.3e-51 17
Gly_transf_sug Glycosyltransferase sugar-binding reg 38.9 4e-11 1
Ham1p_like Ham1 family 9.1 0.026 1
Pox_G5 Poxvirus G5 protein 2.2 0.28 1
Nrf1_DNA-bind NLS-binding and DNA-binding and dimer 4.7 0.3 1
Adeno_knob Adenoviral fibre protein (knob domain -0.3 0.42 1
DUF1828 Domain of unknown function DUF1828 6.8 0.42 1
DUF1779 Protein of unknown function (DUF1779) 1.9 0.56 1
UPF0254 Uncharacterised protein family (UPF02 4.1 0.79 1
Mo25 Mo25-like 2.7 0.95 1
Not1 CCR4-Not complex component, Not1 3.3 0.96 1
FliM Flagellar motor switch protein FliM 3.7 0.98 1
DUF2415 Uncharacterised protein domain (DUF24 6.0 1.1 1
DUF533 Protein of unknown function (DUF533) 3.5 1.2 1
RTC RNA 3'-terminal phosphate cyclase 3.1 1.3 1
RRN3 RNA polymerase I specific transcripti 1.4 1.8 1
UbiD 3-octaprenyl-4-hydroxybenzoate carbox 1.4 1.9 1
Vps52 Vps52 / Sac2 family 0.4 2 1
Peptidase_C11 Clostripain family 1.0 2.3 1
DUF1738 Domain of unknown function (DUF1738) 3.0 2.3 1
Clp_N Clp amino terminal domain 4.2 2.4 1
Porin_2 Porin subfamily 1.6 2.7 1
DUF2466 Protein of unknown function (DUF2466) 2.7 2.7 1
RE_AlwI AlwI restriction endonuclease 1.1 2.9 1
Thr_dehydrat_C C-terminal regulatory domain of Threo 3.0 2.9 1
Phage_Cox Regulatory phage protein cox 2.7 3.1 1
Peptidase_C1_2 Peptidase C1-like family 0.2 3.1 1
Matrix Viral matrix protein 1.3 3.1 1
Citrus_P18 Citrus tristeza virus P18 protein 1.4 3.2 1
YL1_C YL1 nuclear protein C-terminal domain 4.9 3.4 1
DUF1803 Domain of unknown function (DUF1803) 2.6 3.4 1
DUF1805 Domain of unknown function (DUF1805) 2.8 3.6 1
SelB-wing_2 Elongation factor SelB, winged helix 4.3 3.7 1
CRAL_TRIO_N CRAL/TRIO, N-terminus 2.3 4.1 1
PIN PIN domain 1.5 4.1 2
Enterotoxin_a Heat-labile enterotoxin alpha chain 1.0 4.4 1
DUF976 Caenorhabditis elegans protein of unk 1.6 4.4 1
DUF972 Protein of unknown function (DUF972) 2.0 4.5 1
Ins_allergen_rp Insect allergen related repeat 3.2 4.7 1
DUF2102 Uncharacterized protein conserved in 2.2 4.8 1
Peptidase_M28 Peptidase family M28 0.9 4.9 1
XFP D-xylulose 5-phosphate/D-fructose 6-p 1.1 5.3 1
Prenylcys_lyase Prenylcysteine lyase -0.4 5.5 1
RNA_pol_Rpb2_6 RNA polymerase Rpb2, domain 6 -0.8 5.5 1
Sec66 Preprotein translocase subunit Sec66 0.7 5.6 1
MORN_2 MORN repeat variant 4.2 5.7 2
DUF821 Arabidopsis thaliana protein of unkno -0.7 5.7 1
US2 US2 family 1.4 5.8 1
Chaperone_III Type III secretion chaperone domain 1.3 5.8 1
SpoU_sub_bind RNA 2'-O ribose methyltransferase sub 2.8 6.1 1
DUF2555 Protein of unknown function (DUF2555) 2.2 6.1 1
S4 S4 domain 3.5 6.3 1
MutS_IV MutS family domain IV 2.4 6.3 1
Wyosine_form Wyosine base formation 2.5 6.4 1
DUF270 Protein of unknown function, DUF270 -3.7 6.5 1
DUF1679 Protein of unknown function (DUF1679) 0.4 6.6 1
DUF587 Protein of unknown function (DUF587) 0.8 6.9 1
DED Death effector domain 2.0 7 1
Thiol_cytolysin Thiol-activated cytolysin -0.2 7.1 1
Neugrin Neugrin -0.3 7.2 1
PBP5_C Penicillin-binding protein 5, C-termi 2.0 7.2 1
PalH PalH/RIM21 -0.3 7.3 1
Spc97_Spc98 Spc97 / Spc98 family -1.0 7.4 1
Pro_CA Carbonic anhydrase 1.3 7.5 1
Reo_sigma1 Reovirus viral attachment protein sig -0.2 7.8 1
DUF1846 Domain of unknown function (DUF1846) -0.0 7.9 1
Peptidase_U49 Peptidase U49 0.4 7.9 1
HSP20 Hsp20/alpha crystallin family 1.9 8 1
Ssl1 Ssl1-like -2.7 8.3 1
Vac_Fusion Chordopoxvirus fusion protein -0.3 8.4 1
SEA SEA domain 1.5 8.5 1
PDEase_I 3'5'-cyclic nucleotide phosphodiester -0.9 8.9 1
ComK ComK protein 0.4 9 1
Branch_AA_trans Branched-chain amino acid transport p -0.6 9.2 1
Pox_RNA_Pol_19 Poxvirus DNA-directed RNA polymerase 0.3 9.2 1
VTC VTC domain -0.2 9.2 1
LRR_1 Leucine Rich Repeat 2.9 9.3 1
Pox_A14 Poxvirus virion envelope protein A14 1.9 9.4 1
Peptidase_M4_C Thermolysin metallopeptidase, alpha-h 0.2 9.4 1
Cyclin Cyclin -0.1 9.5 1
UPF0560 Uncharacterised protein family UPF056 -2.1 9.5 1
IpaD Invasion plasmid antigen IpaD -1.8 9.6 1
MED6 MED6 mediator sub complex component 0.6 9.8 1
IFN-gamma Interferon gamma 0.2 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
RTC 1/1 9 21 .. 221 233 .] 3.1 1.3
SelB-wing_2 1/1 27 35 .. 1 9 [. 4.3 3.7
Thr_dehydrat_C 1/1 33 47 .. 79 93 .] 3.0 2.9
Nrf1_DNA-bind 1/1 53 78 .. 189 214 .] 4.7 0.3
UPF0254 1/1 65 80 .. 151 166 .] 4.1 0.79
Ham1p_like 1/1 68 79 .. 192 203 .] 9.1 0.026
LRR_1 1/1 80 101 .. 1 25 [] 2.9 9.3
Prenylcys_lyase 1/1 130 142 .. 1 13 [. -0.4 5.5
Peptidase_C1_2 1/1 148 162 .. 1 15 [. 0.2 3.1
DUF1846 1/1 163 173 .. 493 503 .] -0.0 7.9
Sec66 1/1 169 202 .. 154 189 .] 0.7 5.6
CRAL_TRIO_N 1/1 183 201 .. 71 89 .] 2.3 4.1
DUF1679 1/1 201 213 .. 414 426 .] 0.4 6.6
SEA 1/1 205 241 .. 86 121 .] 1.5 8.5
MutS_IV 1/1 213 234 .. 1 22 [. 2.4 6.3
Spc97_Spc98 1/1 215 237 .. 635 657 .] -1.0 7.4
Gly_transf_sug 1/1 234 291 .. 1 67 [. 38.9 4e-11
DUF972 1/1 354 367 .. 1 14 [. 2.0 4.5
IFN-gamma 1/1 387 405 .. 1 19 [. 0.2 9.9
Vac_Fusion 1/1 399 414 .. 16 31 .. -0.3 8.4
XFP 1/1 447 455 .. 1 9 [. 1.1 5.3
DUF270 1/1 453 457 .. 1 5 [. -3.7 6.5
DUF2415 1/1 480 501 .. 16 35 .. 6.0 1.1
DUF2555 1/1 503 519 .. 1 17 [. 2.2 6.1
Mo25 1/1 558 571 .. 376 389 .] 2.7 0.95
Pro_CA 1/1 620 632 .. 191 203 .] 1.3 7.5
Clp_N 1/1 664 680 .. 37 53 .] 4.2 2.4
Enterotoxin_a 1/1 736 754 .. 247 265 .] 1.0 4.4
PalH 1/1 772 785 .. 417 431 .] -0.3 7.3
VTC 1/1 781 802 .. 1 22 [. -0.2 9.2
Pox_A14 1/1 809 816 .. 88 95 .] 1.9 9.4
Phage_Cox 1/1 851 869 .. 1 20 [. 2.7 3.1
DUF2102 1/1 855 870 .. 89 104 .] 2.2 4.8
DED 1/1 862 892 .. 36 66 .. 2.0 7
Chaperone_III 1/1 868 880 .. 81 93 .. 1.3 5.8
Not1 1/1 873 892 .. 1 20 [. 3.3 0.96
HSP20 1/1 888 900 .. 1 13 [. 1.9 8
DUF1803 1/1 906 920 .. 121 139 .] 2.6 3.4
Matrix 1/1 918 934 .. 339 355 .] 1.3 3.1
PBP5_C 1/1 934 958 .. 74 102 .] 2.0 7.2
UPF0560 1/1 983 990 .. 1 8 [. -2.1 9.5
Cyclin 1/1 1009 1028 .. 1 20 [. -0.1 9.5
Ins_allergen_rp 1/1 1015 1024 .. 1 10 [. 3.2 4.7
DUF533 1/1 1053 1065 .. 196 208 .] 3.5 1.2
IpaD 1/1 1069 1082 .. 1 14 [. -1.8 9.6
Peptidase_M28 1/1 1178 1194 .. 206 221 .] 0.9 4.9
UbiD 1/1 1217 1229 .. 436 448 .] 1.4 1.9
Neugrin 1/1 1220 1233 .. 1 14 [. -0.3 7.2
Ssl1 1/1 1228 1242 .. 1 15 [. -2.7 8.3
PDEase_I 1/1 1241 1258 .. 239 257 .] -0.9 8.9
Peptidase_U49 1/1 1252 1268 .. 219 241 .] 0.4 7.9
Thiol_cytolysin 1/1 1276 1286 .. 458 468 .] -0.2 7.1
FliM 1/1 1298 1312 .. 179 193 .] 3.7 0.98
DUF1779 1/1 1301 1307 .. 205 211 .] 1.9 0.56
DUF976 1/1 1346 1374 .. 141 171 .] 1.6 4.4
S4 1/1 1355 1368 .. 35 48 .] 3.5 6.3
DUF1805 1/1 1362 1375 .. 55 68 .] 2.8 3.6
DUF1828 1/1 1363 1381 .. 52 70 .. 6.8 0.42
Vps52 1/1 1366 1398 .. 564 596 .] 0.4 2
Branch_AA_trans 1/1 1401 1428 .. 383 417 .. -0.6 9.2
SpoU_sub_bind 1/1 1408 1417 .. 1 10 [. 2.8 6.1
US2 1/1 1452 1463 .. 1 13 [. 1.4 5.8
Wyosine_form 1/1 1485 1496 .. 58 69 .] 2.5 6.4
Peptidase_C11 1/1 1497 1513 .. 1 19 [. 1.0 2.3
Pox_RNA_Pol_19 1/1 1499 1517 .. 1 19 [. 0.3 9.2
DUF821 1/1 1504 1512 .. 116 124 .. -0.7 5.7
CW_binding_1 1/17 1556 1563 .. 12 19 .] 1.0 33
Porin_2 1/1 1588 1597 .. 1 11 [. 1.6 2.7
PIN 1/2 1604 1614 .. 1 11 [. 0.6 7.3
RRN3 1/1 1631 1645 .. 655 669 .] 1.4 1.8
ComK 1/1 1642 1666 .. 1 25 [. 0.4 9
DUF587 1/1 1684 1692 .. 220 228 .] 0.8 6.9
PIN 2/2 1718 1727 .. 1 10 [. 0.8 6.4
CW_binding_1 2/17 1833 1847 .. 1 15 [. 4.3 2.9
Peptidase_M4_C 1/1 1833 1841 .. 1 9 [. 0.2 9.4
CW_binding_1 3/17 1854 1873 .. 1 19 [] 11.7 0.013
CW_binding_1 4/17 1881 1894 .. 6 19 .] 8.4 0.15
CW_binding_1 5/17 1946 1965 .. 1 19 [] 6.8 0.48
CW_binding_1 6/17 1967 1985 .. 1 19 [] 17.0 0.00026
Pox_G5 1/1 1974 1986 .. 545 557 .] 2.2 0.28
CW_binding_1 7/17 1987 2005 .. 1 19 [] 21.8 7.9e-06
Adeno_knob 1/1 1996 2017 .. 62 85 .. -0.3 0.42
CW_binding_1 8/17 2007 2025 .. 1 19 [] 12.2 0.0093
MORN_2 1/2 2012 2032 .. 1 22 [] 2.0 25
DUF2466 1/1 2013 2025 .. 113 125 .] 2.7 2.7
CW_binding_1 9/17 2077 2093 .. 1 16 [. 4.4 2.8
CW_binding_1 10/17 2104 2117 .. 6 19 .] 12.8 0.006
Citrus_P18 1/1 2110 2134 .. 143 167 .] 1.4 3.2
RE_AlwI 1/1 2117 2135 .. 1 20 [. 1.1 2.9
CW_binding_1 11/17 2119 2137 .. 1 19 [] 12.8 0.0058
Reo_sigma1 1/1 2135 2157 .. 225 248 .. -0.2 7.8
CW_binding_1 12/17 2139 2157 .. 1 19 [] 6.1 0.79
RNA_pol_Rpb2_6 1/1 2145 2160 .. 145 160 .. -0.8 5.5
MED6 1/1 2162 2175 .. 87 101 .] 0.6 9.8
CW_binding_1 13/17 2209 2226 .. 1 15 [. 7.9 0.21
MORN_2 2/2 2217 2239 .. 1 22 [] 2.3 20
YL1_C 1/1 2223 2241 .. 12 30 .] 4.9 3.4
DUF1738 1/1 2226 2238 .. 41 53 .. 3.0 2.3
CW_binding_1 14/17 2238 2251 .. 6 19 .] 10.7 0.028
CW_binding_1 15/17 2253 2271 .. 1 19 [] 14.5 0.0017
CW_binding_1 16/17 2273 2291 .. 1 19 [] 7.9 0.21
CW_binding_1 17/17 2323 2335 .. 1 13 [. 4.4 2.7
Alignments of top-scoring domains:
RTC: domain 1 of 1, from 9 to 21: score 3.1, E = 1.3
CS HHHHSS-EEEEEE
RF xxxxxxxxxxxxx
*->ieqFlgvkFeiee<-*
+e++ +v+F+++e
gi|1459555 9 LEKMANVRFRVQE 21
SelB-wing_2: domain 1 of 1, from 27 to 35: score 4.3, E = 3.7
*->lleaLaayH<-*
+l+aL++yH
gi|1459555 27 ILDALEEYH 35
Thr_dehydrat_C: domain 1 of 1, from 33 to 47: score 3.0, E = 2.9
CS EEECTTT-HHHHHCC
*->dyvdlsdneaakehL<-*
+y+++s n+++ ++L
gi|1459555 33 EYHNMSENTVVEKYL 47
Nrf1_DNA-bind: domain 1 of 1, from 53 to 78: score 4.7, E = 0.3
*->hALrkivinCYKyHGReDLLpaFaee<-*
+ L i i YK+ GR+ L +F+e
gi|1459555 53 NSLTDIYIDTYKKSGRNKALKKFKEY 78
UPF0254: domain 1 of 1, from 65 to 80: score 4.1, E = 0.79
*->ksGIkraLkllesflk<-*
ksG +aLk ++++l+
gi|1459555 65 KSGRNKALKKFKEYLV 80
Ham1p_like: domain 1 of 1, from 68 to 79: score 9.1, E = 0.026
CS HHHHHHHHHHHH
*->RgkALkklkkwL<-*
R kALkk+k++L
gi|1459555 68 RNKALKKFKEYL 79
LRR_1: domain 1 of 1, from 80 to 101: score 2.9, E = 9.3
CS T-EEEETTSSS.BCHSCHHHHHH HH
*->nLeeLdLsgCNPpsltgslpssl.nl<-*
e+L+L + N +lt +++++l+
gi|1459555 80 VTEVLELKN-N--NLT-PVEKNLhFV 101
Prenylcys_lyase: domain 1 of 1, from 130 to 142: score -0.4, E = 5.5
*->leetdwfiiNvlk<-*
+ +++ f+iN lk
gi|1459555 130 FYDSNAFLINTLK 142
Peptidase_C1_2: domain 1 of 1, from 148 to 162: score 0.2, E = 3.1
CS SSHHHHHCHHHHHHC
*->eLtteklekFsknfn<-*
+ t+++le+F++n+n
gi|1459555 148 SATNDTLESFRENLN 162
DUF1846: domain 1 of 1, from 163 to 173: score -0.0, E = 7.9
*->DPkYqskkLYy<-*
DP + ++k+Y+
gi|1459555 163 DPRFDYNKFYR 173
Sec66: domain 1 of 1, from 169 to 202: score 0.7, E = 5.6
*->NqaLrrRldailkrkeeekelWelkldkiesgflke<-*
N+ r+R++ i +++++++ + + ++ e+ l+
gi|1459555 169 NKFYRKRMEIIYDKQKNFINYYKTQRE--ENPDLII 202
CRAL_TRIO_N: domain 1 of 1, from 183 to 201: score 2.3, E = 4.1
CS HHHHHHHHHHHHH..-HHH
*->iemltktlkWRrEfGvnei<-*
++++++++k+ rE++++ i
gi|1459555 183 QKNFINYYKTQREENPDLI 201
DUF1679: domain 1 of 1, from 201 to 213: score 0.4, E = 6.6
*->LlEDvikvHesnl<-*
+++D++k+++sn
gi|1459555 201 IIDDIVKIYLSNE 213
SEA: domain 1 of 1, from 205 to 241: score 1.5, E = 8.5
*->iFr.ptteesavdkteiseeleaalrsqsgnlkidss<-*
i++ + ++e++ d++e+ + +e++l++ + n + d+
gi|1459555 205 IVKiYLSNEYSKDIDELNSYIEESLNKVTENSGNDVR 241
MutS_IV: domain 1 of 1, from 213 to 234: score 2.4, E = 6.3
*->gfdeeLDelrdlleeleeelae<-*
+++ ++Del + +ee+ + + e
gi|1459555 213 EYSKDIDELNSYIEESLNKVTE 234
Spc97_Spc98: domain 1 of 1, from 215 to 237: score -1.0, E = 7.4
*->akdldeliaaHedfLdsilsgcf<-*
+kd+del + e+ L+++++++
gi|1459555 215 SKDIDELNSYIEESLNKVTENSG 237
Gly_transf_sug: domain 1 of 1, from 234 to 291: score 38.9, E = 4e-11
*->ydvilvtpdleslfkdtpaypwfqeafssardPGrwpKyynaaasDl
+ ++ +++e+ + ++++ ++qe rw+ + aaasD
gi|1459555 234 ENSGNDVRNFEEFKGGESFKLYEQELVE------RWN--L-AAASDI 271
lRlaiLykYGGiYlDtDvil<-*
lR+ L++ GG+YlD D+ +
gi|1459555 272 LRISALKEVGGVYLDVDMLP 291
DUF972: domain 1 of 1, from 354 to 367: score 2.0, E = 4.5
*->MDKkeLFDqldeLE<-*
DK e+F +l ++E
gi|1459555 354 SDKSEIFSSLGDME 367
IFN-gamma: domain 1 of 1, from 387 to 405: score 0.2, E = 9.9
CS XXXXXXXXX-HCHHHHHHH
*->iLgssGcYCqdtfikeien<-*
++ + +YC ++k ien
gi|1459555 387 LISVKDSYCSNLIVKQIEN 405
Vac_Fusion: domain 1 of 1, from 399 to 414: score -0.3, E = 8.4
*->lfqlivkcCkrlneal<-*
++++i++++k+ln++l
gi|1459555 399 IVKQIENRYKILNNSL 414
XFP: domain 1 of 1, from 447 to 455: score 1.1, E = 5.3
*->trvLGkYlr<-*
+ +LGkYlr
gi|1459555 447 MMELGKYLR 455
DUF270: domain 1 of 1, from 453 to 457: score -3.7, E = 6.5
*->YLRlG<-*
YLR+G
gi|1459555 453 YLRVG 457
DUF2415: domain 1 of 1, from 480 to 501: score 6.0, E = 1.1
*->DLLviSEhqgrVHvi..DlRnl<-*
DLL + E++ ++H+i+ DlRn+
gi|1459555 480 DLLMFKEGSMNIHLIeaDLRNF 501
DUF2555: domain 1 of 1, from 503 to 519: score 2.2, E = 6.1
*->iskedleafteedvaeL<-*
isk +++ te++ a L
gi|1459555 503 ISKTNISQSTEQEMASL 519
Mo25: domain 1 of 1, from 558 to 571: score 2.7, E = 0.95
*->EKefiikqIesLpp<-*
+Ke++++ I+sL +
gi|1459555 558 DKEYLLEKISSLAR 571
Pro_CA: domain 1 of 1, from 620 to 632: score 1.3, E = 7.5
CS EEETTTTEEEEEE
*->vYdietGevevld<-*
+Y+ +Ge+ ++d
gi|1459555 620 YYNPGDGEIQEID 632
Clp_N: domain 1 of 1, from 664 to 680: score 4.2, E = 2.4
CS TTS-HHHHHHHHHHHHH
*->aGvdldalreaiekllg<-*
aG+d+d l ++ie +++
gi|1459555 664 AGLDVDSLSTEIETAID 680
Enterotoxin_a: domain 1 of 1, from 736 to 754: score 1.0, E = 4.4
CS HHHHGXXXXXHHHHHTTXX
*->llSdyqdefiiyngirdEL<-*
+ S +q e+ i+ +r EL
gi|1459555 736 IVSANQYEVRINSEGRREL 754
PalH: domain 1 of 1, from 772 to 785: score -0.3, E = 7.3
*->InnGdDmlfvdptsn<-*
I+ ++ ++++p++n
gi|1459555 772 ISS-KEYISFNPKEN 785
VTC: domain 1 of 1, from 781 to 802: score -0.2, E = 9.2
*->nRqetKYwVhpdnlmevktril<-*
n +e+K +V ++nl+e+ t ++
gi|1459555 781 NPKENKIIVKSKNLPELSTLLQ 802
Pox_A14: domain 1 of 1, from 809 to 816: score 1.9, E = 9.4
*->NSSeIELN<-*
NSS+IEL
gi|1459555 809 NSSDIELE 816
Phage_Cox: domain 1 of 1, from 851 to 869: score 2.7, E = 3.1
*->mqiPYmDaenkviespsDlv<-*
+i Y+ e k+ies sD++
gi|1459555 851 -SINYIKNEFKLIESISDAL 869
DUF2102: domain 1 of 1, from 855 to 870: score 2.2, E = 4.8
*->LEeEvklLpkIsrALe<-*
++ E+kl+++Is AL
gi|1459555 855 IKNEFKLIESISDALY 870
DED: domain 1 of 1, from 862 to 892: score 2.0, E = 7
CS CCSCHHHHHHHHHCTCHCTTBHHHHHHHHHH
*->iksfldlfleLekqgllsednlslLkeLLyr<-*
i+s++d++ L++q+ l+e+++ ++++L++
gi|1459555 862 IESISDALYDLKQQNELEESHFISFEDILET 892
Chaperone_III: domain 1 of 1, from 868 to 880: score 1.3, E = 5.8
CS EEEEEETTS-HHH
*->AlyrLpaiseeEe<-*
Aly+L +++e Ee
gi|1459555 868 ALYDLKQQNELEE 880
Not1: domain 1 of 1, from 873 to 892: score 3.3, E = 0.96
*->siLsELatirthdpedvles<-*
+++EL + +++ed+le+
gi|1459555 873 KQQNELEESHFISFEDILET 892
HSP20: domain 1 of 1, from 888 to 900: score 1.9, E = 8
*->dikedkdafevkl<-*
di e++++f +++
gi|1459555 888 DILETDEGFSIRF 900
DUF1803: domain 1 of 1, from 906 to 920: score 2.6, E = 3.4
*->deqiWayvFideesliYqa<-*
+e+i F+++e++i+ +
gi|1459555 906 GESI----FVETEKAIFSE 920
Matrix: domain 1 of 1, from 918 to 934: score 1.3, E = 3.1
*->lrvydDvIidkikidkk<-*
+ +y+++I++ i ++k+
gi|1459555 918 FSEYANHITEEISKIKG 934
PBP5_C: domain 1 of 1, from 934 to 958: score 2.0, E = 7.2
*->GklevyldgkligegyltvpLvaledVek<-*
G+++ +++gkl+++ v+L a +V
gi|1459555 934 GTIFDTVNGKLVKK----VNLDATHEVNT 958
UPF0560: domain 1 of 1, from 983 to 990: score -2.1, E = 9.5
*->vtLKVQVs<-*
v KVQV+
gi|1459555 983 VAMKVQVY 990
Cyclin: domain 1 of 1, from 1009 to 1028: score -0.1, E = 9.5
*->dellesisrvlerllalnds<-*
+ ++ ++++++++l++l+++
gi|1459555 1009 ELVSTALDETIDLLPTLSEG 1028
Ins_allergen_rp: domain 1 of 1, from 1015 to 1024: score 3.2, E = 4.7
*->ldDflALlPv<-*
ld++++LlP+
gi|1459555 1015 LDETIDLLPT 1024
DUF533: domain 1 of 1, from 1053 to 1065: score 3.5, E = 1.2
*->dpaLveqlEaqvg<-*
dp L++++Ea +g
gi|1459555 1053 DPLLRQEIEAKIG 1065
IpaD: domain 1 of 1, from 1069 to 1082: score -1.8, E = 9.6
*->qNisaltnsiivae<-*
N +a t ii+++
gi|1459555 1069 VNLTAATTAIITSS 1082
Peptidase_M28: domain 1 of 1, from 1178 to 1194: score 0.9, E = 4.9
CS TSTT-SCCC S-CCCHH
*->HtpaDtldn.idpdtlq<-*
Ht D++d+ +++++
gi|1459555 1178 HTVTDDIDHfFSAPSIT 1194
UbiD: domain 1 of 1, from 1217 to 1229: score 1.4, E = 1.9
*->rDlvIipnapgds<-*
+Dl+++pnap+
gi|1459555 1217 KDLMVLPNAPNRV 1229
Neugrin: domain 1 of 1, from 1220 to 1233: score -0.3, E = 7.2
*->mEAPGAPPRtLtWE<-*
m P AP R WE
gi|1459555 1220 MVLPNAPNRVFAWE 1233
Ssl1: domain 1 of 1, from 1228 to 1242: score -2.7, E = 8.3
*->kgYtWEggYvdGeRs<-*
+ +WE+g G+Rs
gi|1459555 1228 RVFAWETGWTPGLRS 1242
PDEase_I: domain 1 of 1, from 1241 to 1258: score -0.9, E = 8.9
*->dvvekDdiqplldtiedNr<-*
++ e d+++lld+i dN
gi|1459555 1241 RSLEN-DGTKLLDRIRDNY 1258
Peptidase_U49: domain 1 of 1, from 1252 to 1268: score 0.4, E = 7.9
*->dRIeaniskLqleendeiwlalc<-*
dRI++n e++++w +++
gi|1459555 1252 DRIRDN------YEGEFYWRYFA 1268
Thiol_cytolysin: domain 1 of 1, from 1276 to 1286: score -0.2, E = 7.1
*->TTLYPkvsdtv<-*
TTL P+++dt
gi|1459555 1276 TTLKPRYEDTN 1286
FliM: domain 1 of 1, from 1298 to 1312: score 3.7, E = 0.98
*->lclPyitiEPIrskL<-*
++ P+it E Ir+kL
gi|1459555 1298 FIVPVITTEYIREKL 1312
DUF1779: domain 1 of 1, from 1301 to 1307: score 1.9, E = 0.56
*->PIITtEY<-*
P ITtEY
gi|1459555 1301 PVITTEY 1307
DUF976: domain 1 of 1, from 1346 to 1374: score 1.6, E = 4.4
*->VnCEevvkdvnEfmdsdrdkfGeLeieilee<-*
++ +vv+dv ++sd+ k G+L ++il +
gi|1459555 1346 IDVDNVVRDVT--IESDKIKKGDLIENILSK 1374
S4: domain 1 of 1, from 1355 to 1368: score 3.5, E = 6.3
CS --TTTBEETTTCEE
*->vkdpsyrVkpgDei<-*
v++ s+++k gD i
gi|1459555 1355 VTIESDKIKKGDLI 1368
DUF1805: domain 1 of 1, from 1362 to 1375: score 2.8, E = 3.6
CS --TT-BHHHHGGGG
*->ikpGMtGrEALekl<-*
ik+G+ ++++L kl
gi|1459555 1362 IKKGDLIENILSKL 1375
DUF1828: domain 1 of 1, from 1363 to 1381: score 6.8, E = 0.42
*->kkykllenilskfGieldd<-*
kk++l+enilsk +ie+++
gi|1459555 1363 KKGDLIENILSKLSIEDNK 1381
Vps52: domain 1 of 1, from 1366 to 1398: score 0.4, E = 2
*->dlilgVLmeeesdlsKeqetfqEllnsstenFv<-*
dli ++L+ ++ +++K+ + +E ++s t n +
gi|1459555 1366 DLIENILSKLSIEDNKIILDNHEINFSGTLNGG 1398
Branch_AA_trans: domain 1 of 1, from 1401 to 1428: score -0.6, E = 9.2
*->lvTliisildgLkalgikigfslvegvlnslfkvL<-*
+v+l +sil+g++a++ + +l +++kvL
gi|1459555 1401 FVSLTFSILEGINAVIEV-------DLLSKSYKVL 1428
SpoU_sub_bind: domain 1 of 1, from 1408 to 1417: score 2.8, E = 6.1
CS EEESHHHHHH
*->lieGrhaVeE<-*
++eG++aV+E
gi|1459555 1408 ILEGINAVIE 1417
US2: domain 1 of 1, from 1452 to 1463: score 1.4, E = 5.8
*->mLeSevsgNqPYs<-*
L+Se+ N PYs
gi|1459555 1452 -LNSELQKNIPYS 1463
Wyosine_form: domain 1 of 1, from 1485 to 1496: score 2.5, E = 6.4
*->EhehSrvvLLAk<-*
++e S+vvL++k
gi|1459555 1485 VSELSDVVLISK 1496
Peptidase_C11: domain 1 of 1, from 1497 to 1513: score 1.0, E = 2.3
*->VYmaaDNLEnLegyalnDl<-*
VYm DN L gy +nDl
gi|1459555 1497 VYM--DNSKPLFGYCSNDL 1513
Pox_RNA_Pol_19: domain 1 of 1, from 1499 to 1517: score 0.3, E = 9.2
*->MadsdDIiDYlSdddeDse<-*
M++s Y S+d+ D +
gi|1459555 1499 MDNSKPLFGYCSNDLKDVK 1517
DUF821: domain 1 of 1, from 1504 to 1512: score -0.7, E = 5.7
*->PLFRYCgdd<-*
PLF+YC++d
gi|1459555 1504 PLFGYCSND 1512
CW_binding_1: domain 1 of 17, from 1556 to 1563: score 1.0, E = 33
CS EEETTSCB
*->YfdsdGkm<-*
Y+d++G++
gi|1459555 1556 YLDENGVA 1563
Porin_2: domain 1 of 1, from 1588 to 1597: score 1.6, E = 2.7
*->MNItKSLLLGS<-*
MNI KS+++ S
gi|1459555 1588 MNI-KSIFINS 1597
PIN: domain 1 of 2, from 1604 to 1614: score 0.6, E = 7.3
CS EEE-HHHHHHH
*->ivlDTnvlial<-*
+lDTn++i +
gi|1459555 1604 LILDTNFIISG 1614
RRN3: domain 1 of 1, from 1631 to 1645: score 1.4, E = 1.8
*->ispnyiewSevkgdy<-*
i+p++i++ + + y
gi|1459555 1631 IQPYFIKFNTLETKY 1645
ComK: domain 1 of 1, from 1642 to 1666: score 0.4, E = 9
*->diskeiYevnkgtmvilPkyDesdq<-*
+ Y+ n m++ P yD +d+
gi|1459555 1642 ETKYTLYVGNRQNMIVEPNYDLDDS 1666
DUF587: domain 1 of 1, from 1684 to 1692: score 0.8, E = 6.9
*->IDdctndlI<-*
ID c+n +I
gi|1459555 1684 IDSCVNKVI 1692
PIN: domain 2 of 2, from 1718 to 1727: score 0.8, E = 6.4
CS EEE-HHHHHH
*->ivlDTnvlia<-*
ivlDTn +++
gi|1459555 1718 IVLDTNYISE 1727
CW_binding_1: domain 2 of 17, from 1833 to 1847: score 4.3, E = 2.9
CS SEEEEETTEEEEEET
*->ngWikdngnWYYfds<-*
+g +++n++ YYf++
gi|1459555 1833 SGLVYINDSLYYFKP 1847
Peptidase_M4_C: domain 1 of 1, from 1833 to 1841: score 0.2, E = 9.4
CS T---SSCCH
*->aGLvYegqS<-*
+GLvY + S
gi|1459555 1833 SGLVYINDS 1841
CW_binding_1: domain 3 of 17, from 1854 to 1873: score 11.7, E = 0.013
CS SEEEEETTEEEEE ETTSCB
*->ngWikdngnWYYf.dsdGkm<-*
+g+ ++++++YYf+ ++G +
gi|1459555 1854 TGFTTIGDDKYYFnPDNGGA 1873
CW_binding_1: domain 4 of 17, from 1881 to 1894: score 8.4, E = 0.15
CS ETTEEEEEETTSCB
*->dngnWYYfdsdGkm<-*
++g+ YYf ++G++
gi|1459555 1881 IDGKNYYFSQNGVL 1894
CW_binding_1: domain 5 of 17, from 1946 to 1965: score 6.8, E = 0.48
CS SEEEEETTEEEEE ETTSCB
*->ngWikdngnWYYf.dsdGkm<-*
+W++ ++ YYf+ ++G++
gi|1459555 1946 IEWQTLDDEVYYFsTDTGRA 1965
CW_binding_1: domain 6 of 17, from 1967 to 1985: score 17.0, E = 0.00026
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g +++++++Yf+sdG m
gi|1459555 1967 KGLNQIGDDKFYFNSDGIM 1985
Pox_G5: domain 1 of 1, from 1974 to 1986: score 2.2, E = 0.28
*->edkFYFnksiiIk<-*
+dkFYFn+ i
gi|1459555 1974 DDKFYFNSDGIMQ 1986
CW_binding_1: domain 7 of 17, from 1987 to 2005: score 21.8, E = 7.9e-06
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g++++n++ +Yfd++G+m
gi|1459555 1987 KGFVNINDKTFYFDDSGVM 2005
Adeno_knob: domain 1 of 1, from 1996 to 2017: score -0.3, E = 0.42
CS EEEEETTSEBESS.TTSBBTTTT-
*->kLlFDsnGvLltsYssaLldktYW<-*
+++FD+ Gv +++Y++ +d+ Y+
gi|1459555 1996 TFYFDDSGVMKSGYTE--IDGKYF 2017
CW_binding_1: domain 8 of 17, from 2007 to 2025: score 12.2, E = 0.0093
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g+ +++g+++Yf ++G+m
gi|1459555 2007 SGYTEIDGKYFYFAENGEM 2025
MORN_2: domain 1 of 2, from 2012 to 2032: score 2.0, E = 25
*->keGeekfyyenGklkeeieykn<-*
+G+++++ enG ++ ++ ++
gi|1459555 2012 IDGKYFYFAENGEMQ-IGVFNT 2032
DUF2466: domain 1 of 1, from 2013 to 2025: score 2.7, E = 2.7
*->dgeyvSFrEeGlL<-*
dg+y+ F+E+G +
gi|1459555 2013 DGKYFYFAENGEM 2025
CW_binding_1: domain 9 of 17, from 2077 to 2093: score 4.4, E = 2.8
CS SEEEEE TTEEEEEETT
*->ngWikd.ngnWYYfdsd<-*
gW+ ++g++YYfd+d
gi|1459555 2077 VGWKDLeDGSKYYFDED 2093
CW_binding_1: domain 10 of 17, from 2104 to 2117: score 12.8, E = 0.006
CS ETTEEEEEETTSCB
*->dngnWYYfdsdGkm<-*
+n+++YYf+++G m
gi|1459555 2104 INDGKYYFNDSGIM 2117
Citrus_P18: domain 1 of 1, from 2110 to 2134: score 1.4, E = 3.2
*->WFYnnGtFqnGLtRCnnLvaLFsat<-*
+F + G+ q G + nn v Fs
gi|1459555 2110 YFNDSGIMQIGFVTINNEVFYFSDS 2134
RE_AlwI: domain 1 of 1, from 2117 to 2135: score 1.1, E = 2.9
*->kelGFiylkengkiliTeaG<-*
+++GF++++ n+++ +++G
gi|1459555 2117 MQIGFVTIN-NEVFYFSDSG 2135
CW_binding_1: domain 11 of 17, from 2119 to 2137: score 12.8, E = 0.0058
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
g++++n+ +Yf ++G
gi|1459555 2119 IGFVTINNEVFYFSDSGIV 2137
Reo_sigma1: domain 1 of 1, from 2135 to 2157: score -0.2, E = 7.8
CS XXXXXXXXXXXXXXXXXXXXXXXX
*->gfvngGmvvkidTdyFqydsNgei<-*
g+v+ Gm+ id +yF +d Ng++
gi|1459555 2135 GIVESGMQ-NIDDNYFYIDENGLV 2157
CW_binding_1: domain 12 of 17, from 2139 to 2157: score 6.1, E = 0.79
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g +++++n++Y+d++G
gi|1459555 2139 SGMQNIDDNYFYIDENGLV 2157
RNA_pol_Rpb2_6: domain 1 of 1, from 2145 to 2160: score -0.8, E = 5.5
CS CCCHCCB-TTSBB-TT
RF xxxxxxxxxxxxxxxx
*->eaalrkLDedGIvrvG<-*
++++ ++De+G+v +G
gi|1459555 2145 DDNYFYIDENGLVQIG 2160
MED6: domain 1 of 1, from 2162 to 2175: score 0.6, E = 9.8
*->fnPsqnGysyPelsn<-*
f++s+ Gy y+ +n
gi|1459555 2162 FDTSD-GYKYFAPAN 2175
CW_binding_1: domain 13 of 17, from 2209 to 2226: score 7.9, E = 0.21
CS SEEEEE T TEEEEEET
*->ngWikd..n.gnWYYfds<-*
+gWi+d +n++++YYfd+
gi|1459555 2209 TGWIYDmeNeSDKYYFDP 2226
MORN_2: domain 2 of 2, from 2217 to 2239: score 2.3, E = 20
*->keGeekfyyenGklkeei.eykn<-*
+e ++++++ k +++ + ++
gi|1459555 2217 NESDKYYFDPETKKAYKGiNVID 2239
YL1_C: domain 1 of 1, from 2223 to 2241: score 4.9, E = 3.4
*->YkDPkTglpYanaeaFkvI<-*
Y+DP+T++ Y + I
gi|1459555 2223 YFDPETKKAYKGINVIDDI 2241
DUF1738: domain 1 of 1, from 2226 to 2238: score 3.0, E = 2.3
*->altGraYsGiNvl<-*
++t++aY+GiNv+
gi|1459555 2226 PETKKAYKGINVI 2238
CW_binding_1: domain 14 of 17, from 2238 to 2251: score 10.7, E = 0.028
CS ETTEEEEEETTSCB
*->dngnWYYfdsdGkm<-*
+++ +YYfd++G m
gi|1459555 2238 IDDIKYYFDENGIM 2251
CW_binding_1: domain 15 of 17, from 2253 to 2271: score 14.5, E = 0.0017
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g i+ +n YYf++dG m
gi|1459555 2253 TGLITFEDNHYYFNEDGIM 2271
CW_binding_1: domain 16 of 17, from 2273 to 2291: score 7.9, E = 0.21
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
g+ ++ ++ +Yf +dG m
gi|1459555 2273 YGYLNIEDKTFYFSEDGIM 2291
CW_binding_1: domain 17 of 17, from 2323 to 2335: score 4.4, E = 2.7
CS SEEEEETTEEEEE
*->ngWikdngnWYYf<-*
+gW +++ YYf
gi|1459555 2323 TGWLDLDEKRYYF 2335
//