hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 145955507.fa
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Query sequence: gi|145955507|ref|ZP_01804508.1|
Accession: [none]
Description: hypothetical protein CdifQ_04000705 [Clostridium difficile QCD-32g58]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CW_binding_1 Putative cell wall binding repeat 194.2 1.3e-60 21
Gly_transf_sug Glycosyltransferase sugar-binding reg 26.7 1.9e-07 1
DUF1958 Domain of unknown function (DUF1958) 19.4 0.00018 4
DUF1869 Domain of unknown function (DUF1869) 5.5 0.02 1
DUF1471 Protein of unknown function (DUF1471) 10.6 0.024 2
WW WW domain 9.6 0.053 4
Clathrin_propel Clathrin propeller repeat 10.1 0.12 1
mRNA_cap_enzyme mRNA capping enzyme, catalytic domain 1.5 0.35 1
Sialidase Sialidase, N-terminal domain 5.4 0.4 1
NS3_envE Non-structural protein NS3/Small enve 5.5 0.45 1
T4-helicase_C T4 gene 59 helicase, C terminal 4.8 0.55 1
Pox_C4_C10 Poxvirus C4/C10 protein 3.0 0.66 1
Rsbr_N Rsbr N terminal 2.0 0.66 1
RNase_PH 3' exoribonuclease family, domain 1 4.6 0.72 1
MORN_2 MORN repeat variant 6.5 1.3 2
HP_OMP Helicobacter outer membrane protein 2.3 1.3 1
Gcw_chp Bacterial protein of unknown function 3.8 1.4 1
Renin_r Renin receptor-like protein 4.4 1.4 1
RNA_pol_Rpc34 RNA polymerase Rpc34 subunit 2.7 1.6 1
SAP18 Sin3 associated polypeptide p18 (SAP1 1.3 1.6 1
DUF533 Protein of unknown function (DUF533) 2.9 1.8 1
Gate Nucleoside recognition 3.6 2.2 1
VWD von Willebrand factor type D domain 2.2 2.3 2
RTX RTX N-terminal domain -0.5 2.5 1
DUF1683 Protein of unknown function (DUF1683) 2.9 2.6 1
DUF1343 Protein of unknown function (DUF1343) 1.3 2.9 1
DUF1635 Protein of unknown function (DUF1635) 2.0 2.9 1
DUF1724 Domain of unknown function (DUF1724) 2.9 3 1
Caps_synth Capsular polysaccharide synthesis pro 2.1 3.1 1
UPF0058 Uncharacterised protein family UPF005 2.2 3.3 1
WAPL Wings apart-like protein -0.7 3.4 1
DUF1410 DUF1410 domain 3.2 3.5 1
SUR7 SUR7 protein 2.1 3.5 1
Glyco_hydro_48 Glycosyl hydrolase family 48 0.1 3.5 1
Herpes_UL46 Herpesvirus UL46 protein 0.6 3.6 1
PurA PurA ssDNA and RNA-binding protein 1.3 3.7 1
Antimicrobial16 Double glycine cleavage site bacterio 3.1 3.8 1
PrgH Type III secretion system protein Prg -1.8 4.2 1
Serpin Serpin (serine protease inhibitor) 0.1 4.2 1
PsiB Plasmid SOS inhibition protein (PsiB) 1.5 4.8 1
DUF2224 Uncharacterized conserved protein (DU 0.4 4.8 1
Cast RIM-binding protein of the cytomatrix -1.7 5 1
Rep_trans Replication initiation factor 1.5 5.1 1
Peptidase_S49 Peptidase family S49 1.8 5.2 1
EF-1_beta_acid Eukaryotic elongation factor 1 beta c 3.1 5.3 1
TAFII55_N TAFII55 protein conserved region 1.0 5.5 1
Glyco_hydro_10 Glycosyl hydrolase family 10 0.1 5.5 1
PhnA PhnA protein 3.5 5.6 1
FAD_binding_6 Oxidoreductase FAD-binding domain 2.2 6.1 1
BOF Bacterial OB fold (BOF) protein 1.7 6.7 1
MGAT2 N-acetylglucosaminyltransferase II (M -1.5 7 1
DUF2314 Uncharacterized protein conserved in 1.1 7.4 1
MRP-S22 Mitochondrial 28S ribosomal protein S -0.4 7.4 1
Rrn6 RNA polymerase I-specific transcripti -0.9 7.4 1
DJ-1_PfpI DJ-1/PfpI family 1.1 7.5 1
Paramyx_P_V Paramyxovirus P/V phosphoprotein -0.1 7.6 1
PYST-C1 Plasmodium yoelii subtelomeric region 1.1 7.7 1
Calreticulin Calreticulin family -0.8 7.8 1
P22_AR_C P22AR C-terminal domain 2.3 7.9 1
ATP-synt_E_2 ATP synthase epsilon subunit 2.1 7.9 1
DUF814 Domain of unknown function (DUF814) 1.5 8.1 1
YHS YHS domain 3.3 8.2 1
Vac_Fusion Chordopoxvirus fusion protein -0.3 8.5 1
EcoEI_R_C EcoEI R protein C-terminal 0.3 8.6 1
ProRS-C_2 Prolyl-tRNA synthetase, C-terminal 0.4 8.7 1
ChitinaseA_N Chitinase A, N-terminal domain 0.9 8.8 1
DUF2429 Domain of unknown function (DUF2429) 0.2 8.9 1
UDP-g_GGTase UDP-glucose:Glycoprotein Glucosyltran 0.1 9 1
DUF1812 Protein of unknown function (DUF1812) 0.3 9.1 1
SecA_SW SecA Wing and Scaffold domain 0.2 9.2 1
HCV_env Hepatitis C virus envelope glycoprote -0.0 9.3 1
SelB-wing_2 Elongation factor SelB, winged helix 2.8 9.3 1
Baculo_Y142 Baculovirus Y142 protein -1.5 9.3 1
Sds3 Sds3-like 0.2 9.4 1
Parvo_NS1 Parvovirus non-structural protein NS1 -0.7 9.6 1
EsxB Virulence factor EsxB 0.9 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UPF0058 1/1 1 12 [. 1 13 [. 2.2 3.3
MRP-S22 1/1 8 18 .. 257 269 .] -0.4 7.4
DUF2224 1/1 28 38 .. 538 548 .] 0.4 4.8
ATP-synt_E_2 1/1 71 81 .. 46 56 .] 2.1 7.9
Antimicrobial16 1/1 77 90 .. 29 42 .] 3.1 3.8
RNA_pol_Rpc34 1/1 92 119 .. 312 345 .] 2.7 1.6
mRNA_cap_enzyme 1/1 153 171 .. 129 147 .. 1.5 0.35
NS3_envE 1/1 177 204 .. 59 85 .] 5.5 0.45
ChitinaseA_N 1/1 193 202 .. 1 10 [. 0.9 8.8
Gly_transf_sug 1/1 254 290 .. 22 67 .. 26.7 1.9e-07
SelB-wing_2 1/1 256 273 .. 41 58 .] 2.8 9.3
Caps_synth 1/1 268 286 .. 124 142 .. 2.1 3.1
Baculo_Y142 1/1 323 338 .. 30 45 .. -1.5 9.3
Vac_Fusion 1/1 341 364 .. 13 36 .. -0.3 8.5
WAPL 1/1 394 405 .. 376 387 .] -0.7 3.4
Glyco_hydro_10 1/1 435 444 .. 38 47 .. 0.1 5.5
P22_AR_C 1/1 503 518 .. 1 18 [. 2.3 7.9
EF-1_beta_acid 1/1 622 649 .. 1 28 [] 3.1 5.3
DJ-1_PfpI 1/1 649 671 .. 1 37 [. 1.1 7.5
DUF2429 1/1 671 688 .. 127 144 .] 0.2 8.9
Sds3 1/1 749 777 .. 208 248 .] 0.2 9.4
Serpin 1/1 806 825 .. 160 179 .. 0.1 4.2
Peptidase_S49 1/1 857 878 .. 137 159 .] 1.8 5.2
DUF1410 1/1 872 898 .. 55 86 .] 3.2 3.5
DUF1869 1/1 893 916 .. 1 24 [. 5.5 0.02
PhnA 1/1 938 949 .. 1 12 [. 3.5 5.6
UDP-g_GGTase 1/1 947 965 .. 169 190 .. 0.1 9
MGAT2 1/1 949 968 .. 1 23 [. -1.5 7
SUR7 1/1 995 1024 .. 1 29 [. 2.1 3.5
Gate 1/1 1027 1088 .. 60 108 .] 3.6 2.2
ProRS-C_2 1/1 1036 1053 .. 1 23 [. 0.4 8.7
Rep_trans 1/1 1038 1070 .. 237 269 .] 1.5 5.1
Cast 1/1 1043 1065 .. 1 22 [. -1.7 5
DUF533 1/1 1055 1067 .. 196 208 .] 2.9 1.8
HCV_env 1/1 1083 1102 .. 171 190 .] -0.0 9.3
PsiB 1/1 1171 1178 .. 136 143 .] 1.5 4.8
Gcw_chp 1/1 1173 1186 .. 1 14 [. 3.8 1.4
DUF1343 1/1 1249 1273 .. 309 342 .. 1.3 2.9
HP_OMP 1/1 1264 1280 .. 17 33 .. 2.3 1.3
Parvo_NS1 1/1 1284 1336 .. 308 364 .] -0.7 9.6
PYST-C1 1/1 1286 1312 .. 62 89 .] 1.1 7.7
Renin_r 1/1 1286 1293 .. 105 112 .] 4.4 1.4
Paramyx_P_V 1/1 1301 1309 .. 1 9 [. -0.1 7.6
DUF1635 1/1 1305 1316 .. 1 13 [. 2.0 2.9
RNase_PH 1/1 1352 1365 .. 1 14 [. 4.6 0.72
Sialidase 1/1 1369 1397 .. 1 29 [. 5.4 0.4
Clathrin_propel 1/1 1384 1420 .. 1 43 [] 10.1 0.12
DUF1683 1/1 1417 1434 .. 78 96 .] 2.9 2.6
Rsbr_N 1/1 1429 1450 .. 1 22 [. 2.0 0.66
Rrn6 1/1 1471 1497 .. 652 678 .. -0.9 7.4
DUF1724 1/1 1484 1492 .. 57 65 .] 2.9 3
T4-helicase_C 1/1 1485 1497 .. 1 13 [. 4.8 0.55
SAP18 1/1 1568 1582 .. 18 32 .. 1.3 1.6
Calreticulin 1/1 1624 1643 .. 29 48 .. -0.8 7.8
BOF 1/1 1761 1787 .. 107 132 .] 1.7 6.7
EsxB 1/1 1773 1788 .. 88 102 .] 0.9 9.9
EcoEI_R_C 1/1 1814 1830 .. 64 80 .. 0.3 8.6
CW_binding_1 1/21 1831 1845 .. 1 15 [. 2.8 8.5
SecA_SW 1/1 1845 1853 .. 1 9 [. 0.2 9.2
CW_binding_1 2/21 1852 1871 .. 1 19 [] 15.3 0.00091
DUF1958 1/4 1853 1863 .. 8 18 .. 5.1 1.5
WW 1/4 1858 1869 .. 12 23 .. 0.8 32
Pox_C4_C10 1/1 1861 1868 .. 362 369 .] 3.0 0.66
CW_binding_1 3/21 1873 1891 .. 1 19 [] 12.1 0.01
MORN_2 1/2 1878 1898 .. 1 22 [] 1.9 25
DUF1471 1/2 1908 1923 .. 71 88 .] 6.0 0.52
VWD 1/2 1919 1937 .. 1 20 [. 1.1 5
CW_binding_1 4/21 1924 1939 .. 1 16 [. 10.8 0.024
DUF1812 1/1 1943 1952 .. 373 382 .] 0.3 9.1
CW_binding_1 5/21 1944 1959 .. 1 16 [. 13.0 0.0049
CW_binding_1 6/21 1970 1980 .. 6 16 .. 3.2 6.4
DUF1958 2/4 1983 1997 .. 1 18 [. 3.5 4.2
CW_binding_1 7/21 1986 2001 .. 1 16 [. 12.8 0.0059
CW_binding_1 8/21 2007 2022 .. 1 16 [. 7.5 0.27
DUF1471 2/2 2042 2057 .. 71 88 .] 4.7 1.2
VWD 2/2 2053 2071 .. 1 20 [. 1.1 5
CW_binding_1 9/21 2058 2073 .. 1 16 [. 10.4 0.034
CW_binding_1 10/21 2078 2093 .. 1 16 [. 13.0 0.005
WW 2/4 2084 2094 .. 12 22 .. 0.2 51
CW_binding_1 11/21 2099 2114 .. 1 16 [. 14.7 0.0015
DUF1958 3/4 2100 2110 .. 8 18 .. 5.4 1.2
WW 3/4 2105 2115 .. 12 22 .. 4.3 2.6
CW_binding_1 12/21 2120 2138 .. 1 19 [] 13.6 0.0032
MORN_2 2/2 2125 2145 .. 1 22 [] 4.6 4.6
DUF2314 1/1 2129 2152 .. 1 25 [. 1.1 7.4
CW_binding_1 13/21 2171 2186 .. 1 16 [. 9.2 0.08
YHS 1/1 2177 2186 .. 19 28 .. 3.3 8.2
CW_binding_1 14/21 2212 2227 .. 1 16 [. 12.1 0.0094
DUF1958 4/4 2213 2223 .. 8 18 .. 5.4 1.2
WW 4/4 2218 2228 .. 12 22 .. 4.3 2.6
DUF814 1/1 2229 2241 .. 1 14 [. 1.5 8.1
CW_binding_1 15/21 2233 2251 .. 1 19 [] 9.9 0.049
CW_binding_1 16/21 2284 2299 .. 1 16 [. 3.3 6.1
RTX 1/1 2290 2312 .. 649 667 .] -0.5 2.5
CW_binding_1 17/21 2304 2322 .. 1 19 [] 14.6 0.0016
PrgH 1/1 2323 2337 .. 406 420 .] -1.8 4.2
CW_binding_1 18/21 2325 2339 .. 1 15 [. 3.1 7
TAFII55_N 1/1 2327 2336 .. 68 77 .. 1.0 5.5
PurA 1/1 2329 2347 .. 212 230 .. 1.3 3.7
FAD_binding_6 1/1 2347 2355 .. 102 111 .] 2.2 6.1
Herpes_UL46 1/1 2370 2383 .. 378 391 .. 0.6 3.6
Glyco_hydro_48 1/1 2373 2384 .. 1 12 [. 0.1 3.5
CW_binding_1 19/21 2375 2390 .. 1 16 [. 0.0 67
CW_binding_1 20/21 2395 2407 .. 1 13 [. 9.2 0.083
CW_binding_1 21/21 2417 2435 .. 1 19 [] 3.4 5.7
Alignments of top-scoring domains:
UPF0058: domain 1 of 1, from 1 to 12: score 2.2, E = 3.3
*->MhGqFGKEELiqL<-*
M+ KEELi+L
gi|1459555 1 MS-LISKEELIKL 12
MRP-S22: domain 1 of 1, from 8 to 18: score -0.4, E = 7.4
*->eLirLtkiLhkiP<-*
eLi L ++++ P
gi|1459555 8 ELIKLAYSIR--P 18
DUF2224: domain 1 of 1, from 28 to 38: score 0.4, E = 4.8
*->tsLkefdklVd<-*
t+L+e++kl +
gi|1459555 28 TNLDEYNKLTT 38
ATP-synt_E_2: domain 1 of 1, from 71 to 81: score 2.1, E = 7.9
*->LdklKrkvLKE<-*
L lK+ +LKE
gi|1459555 71 LSNLKKDILKE 81
Antimicrobial16: domain 1 of 1, from 77 to 90: score 3.1, E = 3.8
*->elLyeliliKfkit<-*
++L e+iliK +t
gi|1459555 77 DILKEVILIKNSNT 90
RNA_pol_Rpc34: domain 1 of 1, from 92 to 119: score 2.7, E = 1.6
*->PVvddCeegiFNYFKmFPgevspitCeYmdeWLe<-*
PV+++ ++ gevs+i eY + W +
gi|1459555 92 PVEKNLHFV------WIGGEVSDIALEYIKQWAD 119
mRNA_cap_enzyme: domain 1 of 1, from 153 to 171: score 1.5, E = 0.35
CS HHHHHHHTCCHHHHCCHH-
*->leilkkeiikPrneekkfk<-*
l+ l++ei++P+++++kf+
gi|1459555 153 LQLLEEEIQNPQFDNMKFY 171
NS3_envE: domain 1 of 1, from 177 to 204: score 5.5, E = 0.45
*->YlynRskqlYkyYneev.kPPvLevDDv<-*
++y R k + +yY +++kP v +DD
gi|1459555 177 FIYDRQKRFINYYKSQInKPTVPTIDDI 204
ChitinaseA_N: domain 1 of 1, from 193 to 202: score 0.9, E = 8.8
*->aAaPGaPtId<-*
+ +P++PtId
gi|1459555 193 INKPTVPTID 202
Gly_transf_sug: domain 1 of 1, from 254 to 290: score 26.7, E = 1.9e-07
*->wfqeafssardPGrwpKyynaaasDllRlaiLykYGGiYlDtDvil<
++qe + r + + aaasD +Rl+ L+ +GG+YlD D+ +
gi|1459555 254 YSQELLN------RGN--L-AAASDIVRLLALKNFGGVYLDVDMLP 290
-*
gi|1459555 - -
SelB-wing_2: domain 1 of 1, from 256 to 273: score 2.8, E = 9.3
*->eallaeGrLklegdwvhL<-*
++ll G L++ d+v+L
gi|1459555 256 QELLNRGNLAAASDIVRL 273
Caps_synth: domain 1 of 1, from 268 to 286: score 2.1, E = 3.1
*->SDlLRveLLnrYGGiWiDa<-*
SD++R+ L+++GG+ +D+
gi|1459555 268 SDIVRLLALKNFGGVYLDV 286
Baculo_Y142: domain 1 of 1, from 323 to 338: score -1.5, E = 9.3
*->kpFIreYlknNfnald<-*
k +I++Y+++Nf+ ld
gi|1459555 323 KKYINNYTSENFDKLD 338
Vac_Fusion: domain 1 of 1, from 341 to 364: score -0.3, E = 8.5
*->LeklfqlivkcCkrlnealkRLEn<-*
L ++f+li+ + ++ +e+ + LEn
gi|1459555 341 LKDNFKLIIESKSEKSEIFSKLEN 364
WAPL: domain 1 of 1, from 394 to 405: score -0.7, E = 3.4
*->LiNLversaaNR<-*
L+NLv ++NR
gi|1459555 394 LTNLVIEQVKNR 405
Glyco_hydro_10: domain 1 of 1, from 435 to 444: score 0.1, E = 5.5
CS -SEEEESSTT
*->FNsiTpENeM<-*
FNs T+EN+M
gi|1459555 435 FNSATAENSM 444
P22_AR_C: domain 1 of 1, from 503 to 518: score 2.3, E = 7.9
*->ekkCPytqeFTEeELqsL<-*
++ ++TE+E++sL
gi|1459555 503 PEN--NLSQLTEQEINSL 518
EF-1_beta_acid: domain 1 of 1, from 622 to 649: score 3.1, E = 5.3
*->LFGSddeeedeeaekire.eRlaeyaakk<-*
F Sdd e e +k r +eRl++ ++ k
gi|1459555 622 -FLSDDGESILELNKYRIpERLKNKEKVK 649
DJ-1_PfpI: domain 1 of 1, from 649 to 671: score 1.1, E = 7.5
CS EEEEEESSTTC-..-EEE-TTS......TSCHEEECS
*->evtvvspnkgkgdcvevkgkrgggaqyekggvkvtad<-*
+vt+++++k+ e++++ ++ +++ +d
gi|1459555 649 KVTFIGHGKD-----EFNTS--------EF-ARLSVD 671
DUF2429: domain 1 of 1, from 671 to 688: score 0.2, E = 8.9
*->DAmqtEmssrfdvvknei<-*
D + +E+ss +d++k +i
gi|1459555 671 DSLSNEISSFLDTIKLDI 688
Sds3: domain 1 of 1, from 749 to 777: score 0.2, E = 9.4
*->reskrkkglsksgvGfPaAPyatlivyglreeeIneDltai<-*
++++rk+ l++sg + +ee I++Dl++
gi|1459555 749 NSEGRKELLAHSG------------KWINKEEAIMSDLSSK 777
Serpin: domain 1 of 1, from 806 to 825: score 0.1, E = 4.2
CS SSSSSTTTSSTTTEEEEEEE
*->IkdLlsdgsLDsdTvlvLVN<-*
Ik Ll d+s+ +dT+++L+N
gi|1459555 806 IKTLLLDASVSPDTKFILNN 825
Peptidase_S49: domain 1 of 1, from 857 to 878: score 1.8, E = 5.2
*->LVDelgtlddAvaelaealagvk<-*
L+De ++l+++ el e l++++
gi|1459555 857 LIDEFNLLENVSDELYE-LKKLN 878
DUF1410: domain 1 of 1, from 872 to 898: score 3.2, E = 3.5
*->YqLkkielvdnnnnpnnklinnndlvnknkii<-*
Y+Lkk+ ++ ++ + li+ +d++ +n++
gi|1459555 872 YELKKL--NNLDE---KYLISFEDISKNNSTY 898
DUF1869: domain 1 of 1, from 893 to 916: score 5.5, E = 0.02
*->nnkatyllTVTNNsNGVSVDkdfe<-*
n+ ty + N sNG SV ++e
gi|1459555 893 KNNSTYSVRFINKSNGESVYVETE 916
PhnA: domain 1 of 1, from 938 to 949: score 3.5, E = 5.6
*->ivkDsnGnlLad<-*
i+ D+nGnlL +
gi|1459555 938 IITDVNGNLLDN 949
UDP-g_GGTase: domain 1 of 1, from 947 to 965: score 0.1, E = 9
*->LDNIkLedlgedvtLdSHTAvY<-*
LDNI L +++ + tL A +
gi|1459555 947 LDNIQLDHTSQVNTLN---AAF 965
MGAT2: domain 1 of 1, from 949 to 968: score -1.5, E = 7
*->nltLkkRnivspvsfrNedQavl<-*
n++L+ ++v +N ++++
gi|1459555 949 NIQLDHTSQVNT---LNAAFFIQ 968
SUR7: domain 1 of 1, from 995 to 1024: score 2.1, E = 3.5
*->lffliLdgasdsiplnd.fywleadtagil<-*
lf + L+++ dsi l++ ++++ +dt + l
gi|1459555 995 LFSTGLNTIYDSIQLVNlISNAVNDTINVL 1024
Gate: domain 1 of 1, from 1027 to 1088: score 3.6, E = 2.2
*->ftagesalasliillgle..............aseleviftllsasc
+t+g+++++++++ + l+ ++ +++++ ele+ + +l +++
gi|1459555 1027 ITEGIPIVSTILDGINLGaaikelldehdpllKKELEAKVGVLAINM 1073
iavfllpvivsilGik<-*
+ + ++++++si+Gi+
gi|1459555 1074 SLS-IAATVASIVGIG 1088
ProRS-C_2: domain 1 of 1, from 1036 to 1053: score 0.4, E = 8.7
CS EEE-S...S--..HHHHHHHCTT
*->ITvLdFEnDvNsLsdkvKakLlE<-*
T+Ld +N L +K L E
gi|1459555 1036 -TILD---GIN-LGAAIKELLDE 1053
Rep_trans: domain 1 of 1, from 1038 to 1070: score 1.5, E = 5.1
*->lfegdltdlikdtlregekalqkklnlapdsyk<-*
l++++l ik++l+e ++ l+k+l+ ++ +++
gi|1459555 1038 LDGINLGAAIKELLDEHDPLLKKELEAKVGVLA 1070
Cast: domain 1 of 1, from 1043 to 1065: score -1.7, E = 5
*->LqaqlenaqrEnE.lLkkelEvk<-*
L a ++++ E ++lLkkelE+k
gi|1459555 1043 LGAAIKELLDEHDpLLKKELEAK 1065
DUF533: domain 1 of 1, from 1055 to 1067: score 2.9, E = 1.8
*->dpaLveqlEaqvg<-*
dp L+ +lEa vg
gi|1459555 1055 DPLLKKELEAKVG 1067
HCV_env: domain 1 of 1, from 1083 to 1102: score -0.0, E = 9.3
*->smvGaWAKvlvvlLLvAGvD<-*
s+vG A v + lL +AG+
gi|1459555 1083 SIVGIGAEVTIFLLPIAGIS 1102
PsiB: domain 1 of 1, from 1171 to 1178: score 1.5, E = 4.8
*->vLaaEGaa<-*
+La+EG+
gi|1459555 1171 ILAMEGGS 1178
Gcw_chp: domain 1 of 1, from 1173 to 1186: score 3.8, E = 1.4
*->eAeaaSPhtfSaNi<-*
+ e+ S+ht+++Ni
gi|1459555 1173 AMEGGSGHTVTGNI 1186
DUF1343: domain 1 of 1, from 1249 to 1273: score 1.3, E = 2.9
*->glalllalyrLYPdqfefrkdgayEfnddrpafD<-*
g +ll +++LYP++f +r +a +fD
gi|1459555 1249 GTKLLDSIRDLYPGKFYWR-FYA--------FFD 1273
HP_OMP: domain 1 of 1, from 1264 to 1280: score 2.3, E = 1.3
*->fGlRYYGFfDYghanfg<-*
f+ R+Y+FfDY+ + ++
gi|1459555 1264 FYWRFYAFFDYAITTLK 1280
Parvo_NS1: domain 1 of 1, from 1284 to 1336: score -0.7, E = 9.6
*->kdRmyninltktlpnkdfGlitkdeikPTAPqflaWarnnpndhisq
+d++++i l+k+ n +++it+dei+ + l+++ + ++ +s+
gi|1459555 1284 EDTNTKIKLDKDTRNFIMPTITTDEIR----NKLSYSFDGAGGTYSL 1326
wsvrvthefp<-*
++ + ++
gi|1459555 1327 LLSSYPISMN 1336
PYST-C1: domain 1 of 1, from 1286 to 1312: score 1.1, E = 7.7
*->nNnkdikddkdDkdFncFninkddkknk<-*
+N k ik dkd+++F + i d+ +nk
gi|1459555 1286 TNTK-IKLDKDTRNFIMPTITTDEIRNK 1312
Renin_r: domain 1 of 1, from 1286 to 1293: score 4.4, E = 1.4
*->TstRiKkD<-*
T+t+iK+D
gi|1459555 1286 TNTKIKLD 1293
Paramyx_P_V: domain 1 of 1, from 1301 to 1309: score -0.1, E = 7.6
*->datfsdeEi<-*
++t++++Ei
gi|1459555 1301 MPTITTDEI 1309
DUF1635: domain 1 of 1, from 1305 to 1316: score 2.0, E = 2.9
*->ktieELRQsLlyT<-*
t++E+R +L y+
gi|1459555 1305 -TTDEIRNKLSYS 1316
RNase_PH: domain 1 of 1, from 1352 to 1365: score 4.6, E = 0.72
CS -EEEEEEEESSSST
*->efRpieietgvlpr<-*
e+R+i+ie g++++
gi|1459555 1352 EVREISIENGTIKK 1365
Sialidase: domain 1 of 1, from 1369 to 1397: score 5.4, E = 0.4
CS --SSEEEE..EEEEEE-TTT-EE-TTSTT
*->iptvieyelinnnidisngqgydLsselg<-*
i+ v+++ +in+n+ i +q+ d s++++
gi|1459555 1369 IEDVLSKIDINKNKLIIGNQTIDFSGDID 1397
Clathrin_propel: domain 1 of 1, from 1384 to 1420: score 10.1, E = 0.12
CS EECCEEEEEEEEEEEEEEEEEEEEEE.EETCECEEEEEEEETT
*->gaifsdidfptaimeswkgilainkqnaqdlakggkvqivdle<-*
+ +++idf + i++++++i++ + + +i++++
gi|1459555 1384 IIGNQTIDFSGDIDNKDRYIFLTC------ELDDKISLIIEIN 1420
DUF1683: domain 1 of 1, from 1417 to 1434: score 2.9, E = 2.6
*->veanlinepsDsFmFSGhk<-*
+e+nl +++s+s +SG+k
gi|1459555 1417 IEINL-VAKSYSLLLSGDK 1434
Rsbr_N: domain 1 of 1, from 1429 to 1450: score 2.0, E = 0.66
CS HHHHTHHHHHHHHHHHHHHH.H
*->FirEnkdeLvenWldeLkklks<-*
+++ k+ L+ n+ ++++k+++
gi|1459555 1429 LLSGDKNYLISNLSNTIEKINT 1450
Rrn6: domain 1 of 1, from 1471 to 1497: score -0.9, E = 7.4
*->fGarStkllklfihekltsidlldiYd<-*
fGa S ++ k++ih k++s ++l+ Y+
gi|1459555 1471 FGAISKTSQKSIIHYKKDSKNILEFYN 1497
DUF1724: domain 1 of 1, from 1484 to 1492: score 2.9, E = 3
*->YYkerSrei<-*
+Yk++S+ i
gi|1459555 1484 HYKKDSKNI 1492
T4-helicase_C: domain 1 of 1, from 1485 to 1497: score 4.8, E = 0.55
CS HHHHHHHHHHHHH
*->FkeDvknllyFse<-*
+k D+kn+l+F++
gi|1459555 1485 YKKDSKNILEFYN 1497
SAP18: domain 1 of 1, from 1568 to 1582: score 1.3, E = 1.6
*->FtknngrHhnvdeyd<-*
F+kn+++Hhn + ++
gi|1459555 1568 FVKNSDGHHNTSNFM 1582
Calreticulin: domain 1 of 1, from 1624 to 1643: score -0.8, E = 7.8
CS -----------EEE--B-T.
*->dgdseiakyfGkWklsagkf<-*
d+ i +yfG+Wk s++k+
gi|1459555 1624 DNNKNIDIYFGEWKTSSSKS 1643
BOF: domain 1 of 1, from 1761 to 1787: score 1.7, E = 6.7
*->DkVkItGevDN.KdlnkaeiDVkfieK<-*
+k++I G + N+ +nk iD k i+K
gi|1459555 1761 QKIRIKGILSNtQSFNKMSIDFKDIKK 1787
EsxB: domain 1 of 1, from 1773 to 1788: score 0.9, E = 9.9
*->qkFdnlSe.vkeiKrL<-*
q+F S+++k+iK+L
gi|1459555 1773 QSFNKMSIdFKDIKKL 1788
EcoEI_R_C: domain 1 of 1, from 1814 to 1830: score 0.3, E = 8.6
*->kvlaerVqYldpdGKli<-*
k+++ ++Y+d+d Kl+
gi|1459555 1814 KIIDNKTYYYDEDSKLV 1830
CW_binding_1: domain 1 of 21, from 1831 to 1845: score 2.8, E = 8.5
CS SEEEEETTEEEEEET
*->ngWikdngnWYYfds<-*
+g i++n++ +Yfd+
gi|1459555 1831 KGLININNSLFYFDP 1845
SecA_SW: domain 1 of 1, from 1845 to 1853: score 0.2, E = 9.2
CS SB--HHHHH
*->PIESkmvtk<-*
PIES +vt+
gi|1459555 1845 PIESNLVTG 1853
CW_binding_1: domain 2 of 21, from 1852 to 1871: score 15.3, E = 0.00091
CS SEEEEETTEEEEE ETTSCB
*->ngWikdngnWYYf.dsdGkm<-*
+gW+++ng++YYf+ ++G++
gi|1459555 1852 TGWQTINGKKYYFdINTGAA 1871
DUF1958: domain 1 of 4, from 1853 to 1863: score 5.1, E = 1.5
*->GehkIdGKKYy<-*
G ++I+GKKYy
gi|1459555 1853 GWQTINGKKYY 1863
WW: domain 1 of 4, from 1858 to 1869: score 0.8, E = 32
CS TTCEEEEETTTT
*->dGrpYYyNhnTk<-*
+G++YY++ nT+
gi|1459555 1858 NGKKYYFDINTG 1869
Pox_C4_C10: domain 1 of 1, from 1861 to 1868: score 3.0, E = 0.66
*->kYYFnLPk<-*
kYYF++++
gi|1459555 1861 KYYFDINT 1868
CW_binding_1: domain 3 of 21, from 1873 to 1891: score 12.1, E = 0.01
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+ ++ +ng+ +Yf+++G+m
gi|1459555 1873 TSYKIINGKHFYFNNNGVM 1891
MORN_2: domain 1 of 2, from 1878 to 1898: score 1.9, E = 25
*->keGeekfyyenGklkeeieykn<-*
+G+ +++++nG ++ + +k
gi|1459555 1878 INGKHFYFNNNGVMQ-LGVFKG 1898
DUF1471: domain 1 of 2, from 1908 to 1923: score 6.0, E = 0.52
*->arepgnngnwhatAdiYk<-*
a++ +n+n+ ++A++Y
gi|1459555 1908 ANT--QNNNIEGQAIVYQ 1923
VWD: domain 1 of 2, from 1919 to 1937: score 1.1, E = 5
*->CsvsGdphytTFDGvsYtfp<-*
v++ ++ T +G++Y f+
gi|1459555 1919 AIVYQS-KFLTLNGKKYYFD 1937
CW_binding_1: domain 4 of 21, from 1924 to 1939: score 10.8, E = 0.024
CS SEEEEETTEEEEEETT
*->ngWikdngnWYYfdsd<-*
+++ + ng++YYfd+d
gi|1459555 1924 SKFLTLNGKKYYFDND 1939
DUF1812: domain 1 of 1, from 1943 to 1952: score 0.3, E = 9.1
*->iNGWeivsne<-*
++GW i++ne
gi|1459555 1943 VTGWRIINNE 1952
CW_binding_1: domain 5 of 21, from 1944 to 1959: score 13.0, E = 0.0049
CS SEEEEETTEEEEEETT
*->ngWikdngnWYYfdsd<-*
+gW+ +n+ +YYf+++
gi|1459555 1944 TGWRIINNEKYYFNPN 1959
CW_binding_1: domain 6 of 21, from 1970 to 1980: score 3.2, E = 6.4
CS ETTEEEEEETT
*->dngnWYYfdsd<-*
+++n+YYf++d
gi|1459555 1970 IDNNKYYFNPD 1980
DUF1958: domain 2 of 4, from 1983 to 1997: score 3.5, E = 4.2
*->YkKvLsKGehkIdGKKYy<-*
++sKG ++ +G Yy
gi|1459555 1983 ---IISKGWQTVNGSRYY 1997
CW_binding_1: domain 7 of 21, from 1986 to 2001: score 12.8, E = 0.0059
CS SEEEEETTEEEEEETT
*->ngWikdngnWYYfdsd<-*
+gW+++ng+ YYfd+d
gi|1459555 1986 KGWQTVNGSRYYFDTD 2001
CW_binding_1: domain 8 of 21, from 2007 to 2022: score 7.5, E = 0.27
CS SEEEEETTEEEEEETT
*->ngWikdngnWYYfdsd<-*
ng+++++g+ +Yfdsd
gi|1459555 2007 NGYKTIDGKHFYFDSD 2022
DUF1471: domain 2 of 2, from 2042 to 2057: score 4.7, E = 1.2
*->arepgnngnwhatAdiYk<-*
a++ n+n+ ++A++Y
gi|1459555 2042 ANT--YNNNIEGQAIVYQ 2057
VWD: domain 2 of 2, from 2053 to 2071: score 1.1, E = 5
*->CsvsGdphytTFDGvsYtfp<-*
v++ ++ T +G++Y f+
gi|1459555 2053 AIVYQS-KFLTLNGKKYYFD 2071
CW_binding_1: domain 9 of 21, from 2058 to 2073: score 10.4, E = 0.034
CS SEEEEETTEEEEEETT
*->ngWikdngnWYYfdsd<-*
+++ + ng++YYfd++
gi|1459555 2058 SKFLTLNGKKYYFDNN 2073
CW_binding_1: domain 10 of 21, from 2078 to 2093: score 13.0, E = 0.005
CS SEEEEETTEEEEEETT
*->ngWikdngnWYYfdsd<-*
+gW+++++++YYf+++
gi|1459555 2078 TGWQTIDSKKYYFNTN 2093
WW: domain 2 of 4, from 2084 to 2094: score 0.2, E = 51
CS TTCEEEEETTT
*->dGrpYYyNhnT<-*
d ++YY+N+nT
gi|1459555 2084 DSKKYYFNTNT 2094
CW_binding_1: domain 11 of 21, from 2099 to 2114: score 14.7, E = 0.0015
CS SEEEEETTEEEEEETT
*->ngWikdngnWYYfdsd<-*
+gW++++g++YYf+++
gi|1459555 2099 TGWQTIDGKKYYFNTN 2114
DUF1958: domain 3 of 4, from 2100 to 2110: score 5.4, E = 1.2
*->GehkIdGKKYy<-*
G ++IdGKKYy
gi|1459555 2100 GWQTIDGKKYY 2110
WW: domain 3 of 4, from 2105 to 2115: score 4.3, E = 2.6
CS TTCEEEEETTT
*->dGrpYYyNhnT<-*
dG++YY+N+nT
gi|1459555 2105 DGKKYYFNTNT 2115
CW_binding_1: domain 12 of 21, from 2120 to 2138: score 13.6, E = 0.0032
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g+ +ng+++Yf++dG m
gi|1459555 2120 TGYTIINGKYFYFNTDGIM 2138
MORN_2: domain 2 of 2, from 2125 to 2145: score 4.6, E = 4.6
*->keGeekfyyenGklkeeieykn<-*
+G++++++ +G ++ ++ +k
gi|1459555 2125 INGKYFYFNTDGIMQ-IGVFKA 2145
DUF2314: domain 1 of 1, from 2129 to 2152: score 1.1, E = 7.4
*->iyyvegdDpdmaaAiakAratfkfF<-*
y+ + D m+ ++ kAr +f +F
gi|1459555 2129 -YFYFNTDGIMQIGVFKARDGFEYF 2152
CW_binding_1: domain 13 of 21, from 2171 to 2186: score 9.2, E = 0.08
CS SEEEEETTEEEEEETT
*->ngWikdngnWYYfdsd<-*
n++ + ng++YYf sd
gi|1459555 2171 NKFLTMNGKKYYFGSD 2186
YHS: domain 1 of 1, from 2177 to 2186: score 3.3, E = 8.2
CS TTEEE--SSH
*->eGrlYhFCSe<-*
+G++Y+F+S+
gi|1459555 2177 NGKKYYFGSD 2186
CW_binding_1: domain 14 of 21, from 2212 to 2227: score 12.1, E = 0.0094
CS SEEEEETTEEEEEETT
*->ngWikdngnWYYfdsd<-*
gW++++g++YYf+++
gi|1459555 2212 IGWQTIDGKKYYFNTN 2227
DUF1958: domain 4 of 4, from 2213 to 2223: score 5.4, E = 1.2
*->GehkIdGKKYy<-*
G ++IdGKKYy
gi|1459555 2213 GWQTIDGKKYY 2223
WW: domain 4 of 4, from 2218 to 2228: score 4.3, E = 2.6
CS TTCEEEEETTT
*->dGrpYYyNhnT<-*
dG++YY+N+nT
gi|1459555 2218 DGKKYYFNTNT 2228
DUF814: domain 1 of 1, from 2229 to 2241: score 1.5, E = 8.1
*->wfissggfliivGR<-*
++ s+g ++ii G+
gi|1459555 2229 YIASTG-YTIISGK 2241
CW_binding_1: domain 15 of 21, from 2233 to 2251: score 9.9, E = 0.049
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g+ ++g+ +Yf++dG m
gi|1459555 2233 TGYTIISGKHFYFNTDGIM 2251
CW_binding_1: domain 16 of 21, from 2284 to 2299: score 3.3, E = 6.1
CS SEEEEETTEEEEEETT
*->ngWikdngnWYYfdsd<-*
n++ + +n YYf +d
gi|1459555 2284 NRFLYLHDNIYYFGND 2299
RTX: domain 1 of 1, from 2290 to 2312: score -0.5, E = 2.5
*->HDvVyY....sKtdtGaLTIDgt<-*
HD +yY +++sK tG TIDg
gi|1459555 2290 HDNIYYfgndSKAATGWATIDGN 2312
CW_binding_1: domain 17 of 21, from 2304 to 2322: score 14.6, E = 0.0016
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+gW +++gn YYf ++ +m
gi|1459555 2304 TGWATIDGNRYYFEPNTAM 2322
PrgH: domain 1 of 1, from 2323 to 2337: score -1.8, E = 4.2
*->GpngYVklnqghWYF<-*
G+ngY ++++ YF
gi|1459555 2323 GANGYKTIDNKNFYF 2337
CW_binding_1: domain 18 of 21, from 2325 to 2339: score 3.1, E = 7
CS SEEEEETTEEEEEET
*->ngWikdngnWYYfds<-*
ng+++++++ +Yf++
gi|1459555 2325 NGYKTIDNKNFYFRN 2339
TAFII55_N: domain 1 of 1, from 2327 to 2336: score 1.0, E = 5.5
*->lKTlDkKtly<-*
+KT+D+K++y
gi|1459555 2327 YKTIDNKNFY 2336
PurA: domain 1 of 1, from 2329 to 2347: score 1.3, E = 3.7
*->tVdNKrFyFDvGsNkrGvF<-*
t+dNK+FyF G + GvF
gi|1459555 2329 TIDNKNFYFRNGLPQIGVF 2347
FAD_binding_6: domain 1 of 1, from 2347 to 2355: score 2.2, E = 6.1
CS EEEEESCEEE
*->vkGPlGhFeY<-*
+kGP G FeY
gi|1459555 2347 FKGPNG-FEY 2355
Herpes_UL46: domain 1 of 1, from 2370 to 2383: score 0.6, E = 3.6
*->ALRaQkRFsHflGq<-*
A+R Q RF H+lG+
gi|1459555 2370 AIRYQNRFLHLLGK 2383
Glyco_hydro_48: domain 1 of 1, from 2373 to 2384: score 0.1, E = 3.5
CS HHHHHHHHHHHH
*->YkqrFlelYekI<-*
Y++rFl+l +kI
gi|1459555 2373 YQNRFLHLLGKI 2384
CW_binding_1: domain 19 of 21, from 2375 to 2390: score 0.0, E = 67
CS SEEEEETTEEEEEETT
*->ngWikdngnWYYfdsd<-*
n++ g+ YYf ++
gi|1459555 2375 NRFLHLLGKIYYFGNN 2390
CW_binding_1: domain 20 of 21, from 2395 to 2407: score 9.2, E = 0.083
CS SEEEEETTEEEEE
*->ngWikdngnWYYf<-*
+gW+++n++ YYf
gi|1459555 2395 TGWQTINSKVYYF 2407
CW_binding_1: domain 21 of 21, from 2417 to 2435: score 3.4, E = 5.7
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g ++++g Y+f dG+
gi|1459555 2417 GGLFEIDGVIYFFGVDGVK 2435
//