hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 147673063.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|147673063|ref|YP_001217005.1|
Accession: [none]
Description: RTX protein [Vibrio cholerae O395]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HemolysinCabind Hemolysin-type calcium-binding repeat 26.4 8.1e-07 6
Abhydrolase_1 alpha/beta hydrolase fold 21.4 1e-05 1
Abhydrolase_3 alpha/beta hydrolase fold 5.0 0.5 1
TraH_2 TraH_2 2.8 0.54 1
LTV Low temperature viability protein 3.4 0.66 1
DUF2019 Domain of unknown function (DUF2019) 4.6 0.68 1
53-BP1_Tudor Tumour suppressor p53-binding protein 3.3 0.76 1
DUF2159 Predicted secreted (periplasmic) prot 4.4 1 1
DNA_mis_repair DNA mismatch repair protein, C-termin 4.3 1.1 1
PGAP1 PGAP1-like protein 3.4 1.2 1
L27_1 L27_1 3.0 1.4 1
Abhydrolase_2 Phospholipase/Carboxylesterase 3.5 1.6 2
CBM49 Carbohydrate binding domain CBM49 4.1 1.6 1
Terminase_1 Phage Terminase 1.1 1.6 1
PKD PKD domain 3.4 1.7 1
Gp_dh_N Glyceraldehyde 3-phosphate dehydrogen 0.4 1.8 1
DUF1732 Domain of unknown function (DUF1732) 3.8 1.9 1
XLF XLF (XRCC4-like factor) 3.0 2.1 1
Autotransporter Autotransporter beta-domain 2.8 2.1 1
OmpA OmpA family 3.9 2.4 1
PilN Fimbrial assembly protein (PilN) 2.3 2.4 1
Thioesterase Thioesterase domain 2.4 2.4 1
DUF2134 Predicted membrane protein (DUF2134) 3.0 2.6 1
zf-CHC2 CHC2 zinc finger 3.6 2.7 1
Ada3 Histone acetyltransferases subunit 3 2.5 2.9 1
HisKA_2 Histidine kinase 2.9 3.1 1
DUF936 Plant protein of unknown function (DU -0.1 3.1 1
RtxA RtxA repeat 4.7 3.3 1
Peptidase_C9 Peptidase family C9 0.4 3.3 1
CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISP 1.1 3.4 1
DUF1417 Protein of unknown function (DUF1417) 3.1 3.5 1
TM_helix Conserved TM helix 3.6 3.7 1
PalH PalH/RIM21 0.7 3.8 1
IgG_binding_B B domain 3.0 4 1
FTP Fungalysin/Thermolysin Propeptide Mot 3.5 4.1 1
Leuk-A4-hydro_C Leukotriene A4 hydrolase, C-terminal 1.5 4.5 1
TIM21 TIM21 2.0 4.5 1
VWA_CoxE VWA domain containing CoxE-like prote 1.7 4.6 1
SCO1-SenC SCO1/SenC 1.5 4.7 1
DUF2286 Uncharacterized protein conserved in 2.2 5.7 1
Hep_Hag Hep_Hag 4.1 6 2
Alpha_kinase Alpha-kinase family -0.1 6.1 1
Phage-tail_2 Baseplate structural protein, domain 1.9 6.3 1
DUF679 Protein of unknown function (DUF679) 0.7 6.6 1
Cast RIM-binding protein of the cytomatrix -2.1 6.8 1
Sigma54_DBD Sigma-54, DNA binding domain 1.5 7.4 1
DIRP DIRP 2.1 7.5 1
DUF842 Eukaryotic protein of unknown functio 1.4 7.8 1
Chlor_dismutase Chlorite dismutase 1.0 7.9 1
Saf-Nte_pilin Saf-pilin pilus formation protein 0.9 8.2 1
SecA_PP_bind SecA preprotein cross-linking domain 1.3 8.5 1
Enhancin Viral enhancin protein -0.4 8.6 1
Vinculin Vinculin family -1.4 8.6 1
DUF469 Protein with unknown function (DUF469 -0.5 8.8 1
H-kinase_dim Signal transducing histidine kinase, 2.1 8.9 1
CDC37_C Cdc37 C terminal domain 1.5 9 1
Arch_fla_DE Archaeal flagella protein 0.6 9.1 1
GET2 GET complex subunit GET2 -0.8 9.2 1
DUF1655 Protein of unknown function (DUF1655) 1.8 9.4 1
Tat Transactivating regulatory protein (T 2.0 9.7 1
DUF642 Protein of unknown function, DUF642 -1.3 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Phage-tail_2 1/1 18 40 .. 149 173 .] 1.9 6.3
LTV 1/1 105 123 .. 1 20 [. 3.4 0.66
CBM49 1/1 110 118 .. 83 91 .] 4.1 1.6
SCO1-SenC 1/1 191 214 .. 165 188 .] 1.5 4.7
Vinculin 1/1 250 267 .. 1002 1019 .] -1.4 8.6
PilN 1/1 257 281 .. 152 176 .] 2.3 2.4
DUF679 1/1 300 308 .. 1 9 [. 0.7 6.6
zf-CHC2 1/1 305 319 .. 84 98 .] 3.6 2.7
H-kinase_dim 1/1 432 445 .. 1 14 [. 2.1 8.9
Chlor_dismutase 1/1 448 462 .. 1 16 [. 1.0 7.9
DUF469 1/1 467 471 .. 101 105 .] -0.5 8.8
CDC37_C 1/1 505 532 .. 84 110 .] 1.5 9
DUF842 1/1 546 563 .. 1 18 [. 1.4 7.8
TIM21 1/1 597 605 .. 149 157 .] 2.0 4.5
DIRP 1/1 624 644 .. 87 110 .] 2.1 7.5
IgG_binding_B 1/1 653 670 .. 39 56 .] 3.0 4
Peptidase_C9 1/1 697 717 .. 189 209 .] 0.4 3.3
VWA_CoxE 1/1 702 730 .. 1 33 [. 1.7 4.6
DUF936 1/1 709 738 .. 767 796 .] -0.1 3.1
DUF642 1/1 748 757 .. 330 339 .] -1.3 9.9
Ada3 1/1 756 776 .. 159 179 .] 2.5 2.9
PKD 1/1 817 835 .. 72 92 .] 3.4 1.7
SecA_PP_bind 1/1 858 862 .. 124 128 .] 1.3 8.5
Arch_fla_DE 1/1 978 986 .. 103 111 .] 0.6 9.1
Cast 1/1 1038 1062 .. 712 736 .. -2.1 6.8
DUF1732 1/1 1042 1053 .. 1 12 [. 3.8 1.9
CRISPR_Cse1 1/1 1044 1076 .. 522 557 .] 1.1 3.4
HisKA_2 1/1 1045 1059 .. 17 36 .. 2.9 3.1
DUF2286 1/1 1056 1076 .. 17 37 .. 2.2 5.7
L27_1 1/1 1065 1096 .. 1 35 [. 3.0 1.4
Leuk-A4-hydro_C 1/1 1124 1133 .. 148 157 .] 1.5 4.5
TM_helix 1/1 1126 1143 .. 36 53 .] 3.6 3.7
Abhydrolase_2 1/2 1270 1296 .. 1 27 [. 1.0 7.7
PGAP1 1/1 1280 1297 .. 1 21 [. 3.4 1.2
Abhydrolase_1 1/1 1312 1422 .. 1 103 [. 21.4 1e-05
Abhydrolase_3 1/1 1335 1387 .. 50 128 .. 5.0 0.5
Gp_dh_N 1/1 1341 1357 .. 138 156 .. 0.4 1.8
OmpA 1/1 1343 1368 .. 65 90 .. 3.9 2.4
Abhydrolase_2 2/2 1348 1365 .. 103 132 .. 2.5 3
Thioesterase 1/1 1360 1387 .. 78 108 .. 2.4 2.4
DUF2159 1/1 1473 1491 .. 112 130 .] 4.4 1
FTP 1/1 1589 1609 .. 31 51 .] 3.5 4.1
TraH_2 1/1 1758 1765 .. 202 209 .] 2.8 0.54
53-BP1_Tudor 1/1 1801 1820 .. 14 33 .. 3.3 0.76
Hep_Hag 1/2 1836 1849 .. 1 14 [. 3.4 9.2
Autotransporter 1/1 1843 1890 .. 1 62 [. 2.8 2.1
RtxA 1/1 1843 1860 .. 1 19 [] 4.7 3.3
Saf-Nte_pilin 1/1 1862 1869 .. 139 146 .] 0.9 8.2
Enhancin 1/1 1896 1908 .. 1 13 [. -0.4 8.6
DUF2134 1/1 2001 2041 .. 1 51 [. 3.0 2.6
GET2 1/1 2058 2064 .. 324 330 .] -0.8 9.2
DUF1417 1/1 2116 2131 .. 154 169 .. 3.1 3.5
DNA_mis_repair 1/1 2128 2151 .. 1 29 [. 4.3 1.1
Alpha_kinase 1/1 2165 2178 .. 225 238 .. -0.1 6.1
Sigma54_DBD 1/1 2237 2256 .. 1 20 [. 1.5 7.4
Tat 1/1 2241 2260 .. 1 20 [. 2.0 9.7
XLF 1/1 2249 2279 .. 161 207 .] 3.0 2.1
HemolysinCabind 1/6 2314 2331 .. 1 18 [] 8.6 0.19
PalH 1/1 2318 2329 .. 420 431 .] 0.7 3.8
HemolysinCabind 2/6 2332 2338 .. 1 7 [. 1.8 22
HemolysinCabind 3/6 2350 2357 .. 1 8 [. 4.0 4.9
Hep_Hag 2/2 2397 2420 .. 9 28 .] 0.7 50
DUF1655 1/1 2414 2425 .. 43 55 .] 1.8 9.4
HemolysinCabind 4/6 2437 2448 .. 7 18 .] 3.7 5.8
HemolysinCabind 5/6 2456 2466 .. 8 18 .] 5.9 1.3
HemolysinCabind 6/6 2478 2495 .. 1 18 [] 2.3 16
Terminase_1 1/1 2599 2613 .. 516 530 .] 1.1 1.6
DUF2019 1/1 2610 2626 .. 89 106 .] 4.6 0.68
Alignments of top-scoring domains:
Phage-tail_2: domain 1 of 1, from 18 to 40: score 1.9, E = 6.3
CS EEEEEEEEE-SS----S-----B-S
*->SiThLYMftNsekleeeePvKVKnE<-*
S+T+++ tNs+ + P KV E
gi|1476730 18 SMTSMFSETNSKSIVV--PTKVSPE 40
LTV: domain 1 of 1, from 105 to 123: score 3.4, E = 0.66
*->eKKkAqsFhLVHRsQrDPla<-*
K+ Aq+F VH sQ Pl+
gi|1476730 105 -KNSAQTFGYVHDSQGNPLF 123
CBM49: domain 1 of 1, from 110 to 118: score 4.1, E = 1.6
*->sFGYIhksq<-*
+FGY+h sq
gi|1476730 110 TFGYVHDSQ 118
SCO1-SenC: domain 1 of 1, from 191 to 214: score 1.5, E = 4.7
CS TT--EEEEE-TTSEEEEEE..ESS
*->dHSsffYLIdpdGkilkhYgrnld<-*
+H+s+ L++ dG++ + + ++
gi|1476730 191 NHQSLPHLVSDDGRFTLVISNSKH 214
Vinculin: domain 1 of 1, from 250 to 267: score -1.4, E = 8.6
CS XXXCGSXXXXBXSSXXXX
*->gtvssprlrWkrKaPwkq<-*
gt ssp +r + aPw+q
gi|1476730 250 GTSSSPEVRLLESAPWYQ 267
PilN: domain 1 of 1, from 257 to 281: score 2.3, E = 2.4
*->lrnLeaSklltapelssvlakaqgk<-*
+r Le+ ++++a + ++la+a++
gi|1476730 257 VRLLESAPWYQAGLRDEFLANAKNT 281
DUF679: domain 1 of 1, from 300 to 308: score 0.7, E = 6.6
*->LsstAnLak<-*
+s tA+Lak
gi|1476730 300 YSKTADLAK 308
zf-CHC2: domain 1 of 1, from 305 to 319: score 3.6, E = 2.7
*->kLAdragielpyekg<-*
+LA+++gi ++++++
gi|1476730 305 DLAKEYGIYINDWDP 319
H-kinase_dim: domain 1 of 1, from 432 to 445: score 2.1, E = 8.9
CS --EEEEEHHHHHHH
*->sqtIRVdverLDrL<-*
t++Vdv+ LD++
gi|1476730 432 ASTVKVDVKALDHF 445
Chlor_dismutase: domain 1 of 1, from 448 to 462: score 1.0, E = 7.9
*->eeReaiidEfsefvle<-*
+ R+aii+E++++ ++
gi|1476730 448 ASRKAIITEVNAL-VS 462
DUF469: domain 1 of 1, from 467 to 471: score -0.5, E = 8.8
*->vDaWy<-*
+DaWy
gi|1476730 467 FDAWY 471
CDC37_C: domain 1 of 1, from 505 to 532: score 1.5, E = 9
*->kkfkEleaey.dneeeaekeeeeeedge<-*
++++ + a+y+dn+e ++++ +d+e
gi|1476730 505 EQWAKITAPYtDNHETLTSTKLASNDKE 532
DUF842: domain 1 of 1, from 546 to 563: score 1.4, E = 7.8
*->erkqervqsavdsmlddl<-*
+++qe v s + +ml+d+
gi|1476730 546 NKQQENVASIINTMLNDM 563
TIM21: domain 1 of 1, from 597 to 605: score 2.0, E = 4.5
*->krIylednr<-*
k+I+led++
gi|1476730 597 KTIILEDPE 605
DIRP: domain 1 of 1, from 624 to 644: score 2.1, E = 7.5
*->lkdLPkklPlPLavgtrVtArlrg<-*
++++P++l l v+++V++ + g
gi|1476730 624 FEQMPDELFL---VDNKVISHHEG 644
IgG_binding_B: domain 1 of 1, from 653 to 670: score 3.0, E = 4
*->VdGewlydtatktftvte<-*
VdG w y + vte
gi|1476730 653 VDGAWQYNATVELMSVTE 670
Peptidase_C9: domain 1 of 1, from 697 to 717: score 0.4, E = 3.3
*->HsLVaehkekrgarveklvnk<-*
H+ +eh +++ vekl+n
gi|1476730 697 HASITEHADYEPESVEKLLNL 717
VWA_CoxE: domain 1 of 1, from 702 to 730: score 1.7, E = 4.6
*->arrdfaqlsaeelrrLaralaaLrRklllrlar<-*
++d+++ s+e l L+++++ + l++++
gi|1476730 702 EHADYEPESVEKLLNLRKKIEG----YVLGHPD 730
DUF936: domain 1 of 1, from 709 to 738: score -0.1, E = 3.1
*->etkEkiErLrkKIYgfLLtHVesaasales<-*
e++Ek +LrkKI g++L+H +s + +
gi|1476730 709 ESVEKLLNLRKKIEGYVLGHPDSGRVEAMN 738
DUF642: domain 1 of 1, from 748 to 757: score -1.3, E = 9.9
*->iDdVsvvsvg<-*
+D+Vs++sv+
gi|1476730 748 LDEVSLLSVA 757
Ada3: domain 1 of 1, from 756 to 776: score 2.5, E = 2.9
*->vkiqaaarpgendslktLldk<-*
v++q ++++ +++l+++l+
gi|1476730 756 VAEQTIQAQNSFSRLYDQLEA 776
PKD: domain 1 of 1, from 817 to 835: score 3.4, E = 1.7
CS EEEEEEETTCEEEEEEEEEEE
*->VtLtvsngvgsasattttvtV<-*
V+Ltvsn++g ++a t+
gi|1476730 817 VKLTVSNEYGQTVA--DTIFA 835
SecA_PP_bind: domain 1 of 1, from 858 to 862: score 1.3, E = 8.5
CS HHHHH
*->HQAIE<-*
HQAIE
gi|1476730 858 HQAIE 862
Arch_fla_DE: domain 1 of 1, from 978 to 986: score 0.6, E = 9.1
*->YIErLaGrk<-*
+IE+L++ k
gi|1476730 978 FIEKLNAAK 986
Cast: domain 1 of 1, from 1038 to 1062: score -2.1, E = 6.8
*->AHeaevelRanaesadrgsavdagt<-*
AH + elR++a+++d+++ +++ +
gi|1476730 1038 AHRFAQELRLQAQRSDDPELLEKRI 1062
DUF1732: domain 1 of 1, from 1042 to 1053: score 3.8, E = 1.9
*->aQEvalfAdKaD<-*
aQE+ l A+++D
gi|1476730 1042 AQELRLQAQRSD 1053
CRISPR_Cse1: domain 1 of 1, from 1044 to 1076: score 1.1, E = 3.4
*->d.qddggqpddppearaaWqqtArkalrrlAlrlFda<-*
+ ++ + ddp+ + + ++++r+ A+r++++
gi|1476730 1044 ElRLQAQRSDDPELLEKRI----GNVIRQFAERALEE 1076
HisKA_2: domain 1 of 1, from 1045 to 1059: score 2.9, E = 3.1
*->LrLQarkfkdeevikdEVle<-*
LrLQa++++d+e le
gi|1476730 1045 LRLQAQRSDDPEL-----LE 1059
DUF2286: domain 1 of 1, from 1056 to 1076: score 2.2, E = 5.7
*->dvvEGdlekVlrdvAarALeE<-*
+++E ++++V+r A+rALeE
gi|1476730 1056 ELLEKRIGNVIRQFAERALEE 1076
L27_1: domain 1 of 1, from 1065 to 1096: score 3.0, E = 1.4
*->MPvkkqdtqRALqlLEeyqskLSqt.gDraLRssiE<-*
v +q ++RAL+ +E ++ Sq+++ r +R E
gi|1476730 1065 --VIRQFAERALEEIETFKA--SQAdQGRVFRINLE 1096
Leuk-A4-hydro_C: domain 1 of 1, from 1124 to 1133: score 1.5, E = 4.5
*->icramVeKdL<-*
+c+++V+K+L
gi|1476730 1124 NCSSTVAKVL 1133
TM_helix: domain 1 of 1, from 1126 to 1143: score 3.6, E = 3.7
*->sdlvaklLkklgldslva<-*
s+ vak+Lk+ g d l++
gi|1476730 1126 SSTVAKVLKAGGADKLIG 1143
Abhydrolase_2: domain 1 of 2, from 1270 to 1296: score 1.0, E = 7.7
*->laypaivspakpaqalvIfLHGLGDtg<-*
+ p ++++p+ ++v+fLHG G+++
gi|1476730 1270 GTAPSEGETSSPSGKVVLFLHGSGSSA 1296
PGAP1: domain 1 of 1, from 1280 to 1297: score 3.4, E = 1.2
*->elsGiPVLFIPGldfNaGSyk<-*
+sG +VLF++G ++ S +
gi|1476730 1280 SPSGKVVLFLHG---SGSSAE 1297
Abhydrolase_1: domain 1 of 1, from 1312 to 1422: score 21.4, E = 1e-05
CS CEEEEECTTTSTTSSEE..GGCCGGGSHHHHHHHHHHHHHHHCTSSE
*->fdvialDlrGfGqSsrpkrgapdladyrfddlaedlealldalgldk
d +a++lrG+G+S+ + + + + d+ ++++l+ g+d
gi|1476730 1312 IDMLAVNLRGYGESD-G----GPSEKGLYQDARTMFNYLVNDKGIDP 1353
CS E EEEEEETHHHHHH HHHHHHCGGTCEEEEEEESSS HH
p.vnlvGhSmGGlia...layaakypelrvkalvlvgtv.........lp
++++ G+SmGG ia + ++yaa+ ++ v++l l+ ++++ ++ + ++
gi|1476730 1354 SnIIIHGYSMGGPIAadlARYAAQNGQ-AVSGLLLDRPMpsmtkaitaHE 1402
CS HCHCSTCHHHH HHHHHHHH
aglssplvprl.gnleglla<-*
++ ++ +v ++ + +g+++
gi|1476730 1403 VANPAGIVGAIaKAVNGQFS 1422
Abhydrolase_3: domain 1 of 1, from 1335 to 1387: score 5.0, E = 0.5
CS HHHHHHHHHHHHHTH.........H.HHTEEEEEEEEEEETHHHHHH
*->idDayaAlrWlaehavgsggeddpwlelgaDpsriavaGDSAGGNLA
+ Da + + +l+ g+Dps+i + G S GG +A
gi|1476730 1335 YQDARTMFNYLVNDK-------------GIDPSNIIIHGYSMGGPIA 1368
CS HHHH.HHHHHCTSS-...........EEEEEE
aavAqlrardrGgplaeldpdlspvrpagqvL<-*
a +A a + +g++ ++g++L
gi|1476730 1369 ADLA-RYAAQ-NGQA-----------VSGLLL 1387
Gp_dh_N: domain 1 of 1, from 1341 to 1357: score 0.4, E = 1.8
CS EETTTSGGGGGTTTTSEEE
*->TfVyGVNhddYdpekhkiV<-*
+f+y VN+ +dp+ +i+
gi|1476730 1341 MFNYLVNDKGIDPS--NII 1357
OmpA: domain 1 of 1, from 1343 to 1368: score 3.9, E = 2.4
*->dyLvskgGvpadrisavGyGeskPva<-*
+yLv+ G+++++i Gy + P+a
gi|1476730 1343 NYLVNDKGIDPSNIIIHGYSMGGPIA 1368
Abhydrolase_2: domain 2 of 2, from 1348 to 1365: score 2.5, E = 3
*->ktGkeALEeLIleLeIpssrIiiGGFSQGg<-*
++G I++s+Iii G S+Gg
gi|1476730 1348 DKG------------IDPSNIIIHGYSMGG 1365
Thioesterase: domain 1 of 1, from 1360 to 1387: score 2.4, E = 2.4
CS EETTHHHHHHHHHHHHHHT---T--CEEEEE
*->GhSmGGllAfEvArrLerrqdgGeepagLil<-*
G+SmGG +A +Ar ++ G +++gL l
gi|1476730 1360 GYSMGGPIAADLARYAAQN---GQAVSGLLL 1387
DUF2159: domain 1 of 1, from 1473 to 1491: score 4.4, E = 1
*->DAeeRaAreLAdqIvtrLa<-*
+A +R++++ AdqIv L
gi|1476730 1473 EASNRLMSQYADQIVSGLS 1491
FTP: domain 1 of 1, from 1589 to 1609: score 3.5, E = 4.1
*->geliVhvskdGkvksvsGdfs<-*
++++V +++dG + v+Gd s
gi|1476730 1589 SSVVVQLDSDGNYRVVYGDPS 1609
TraH_2: domain 1 of 1, from 1758 to 1765: score 2.8, E = 0.54
*->IDLSgIGa<-*
IDLS+IG
gi|1476730 1758 IDLSRIGV 1765
53-BP1_Tudor: domain 1 of 1, from 1801 to 1820: score 3.3, E = 0.76
CS STT--BEEEEEEEE-SSSEE
*->ssnGYFYsGkitkDaGeGky<-*
ssn + YsG i +GeG +
gi|1476730 1801 SSNQFSYSGNIQVNVGEGEF 1820
Hep_Hag: domain 1 of 2, from 1836 to 1849: score 3.4, E = 9.2
CS ECSTT-EEESTT-E
*->AtganStAiGsnak<-*
+ g++S+A+G+n++
gi|1476730 1836 TGGFKSLAFGDNNV 1849
Autotransporter: domain 1 of 1, from 1843 to 1890: score 2.8, E = 2.1
CS C CS--SSEEEEEEEEEEEEEE-SS-EEE....EEEEEEEEEEEEEE
*->p.gdngvWarglggrlkytdssggingfrfqtesrsgGlqlGidtkl
gdn+v + + g++k +s +i+g++ ++ G++++l
gi|1476730 1843 AfGDNNVMVHIGDGESK---HSVDIGGYQ---------ALEGAQMFL 1877
CS ..ETTEEEEEEEEEEE
tdgdglslGlafgygr<-*
++ ++++ fg+++
gi|1476730 1878 ---GNRNVSFNFGHSN 1890
RtxA: domain 1 of 1, from 1843 to 1860: score 4.7, E = 3.3
*->GaGgaNvitkvGdggdlaf<-*
+ G Nv++++G +g++ +
gi|1476730 1843 AFGDNNVMVHIG-DGESKH 1860
Saf-Nte_pilin: domain 1 of 1, from 1862 to 1869: score 0.9, E = 8.2
*->ldvvaYQa<-*
+d+ +YQa
gi|1476730 1862 VDIGGYQA 1869
Enhancin: domain 1 of 1, from 1896 to 1908: score -0.4, E = 8.6
*->msktleipvlplP<-*
m k++++p+l +P
gi|1476730 1896 MDKSIPTPPLVNP 1908
DUF2134: domain 1 of 1, from 2001 to 2041: score 3.0, E = 2.6
*->AAAqrlsdgsaaaanssaaaaaaAaaaaarngf..gggdlalslsve
++ +ls+++ + +A++ +a n + +g+g+ +++v+
gi|1476730 2001 SGTSQLSRADK---------LRQANEKLAFNFAvgGQGA---DIQVT 2035
cGywna<-*
+G+wn+
gi|1476730 2036 TGNWNF 2041
GET2: domain 1 of 1, from 2058 to 2064: score -0.8, E = 9.2
*->lfGLlsy<-*
lfGL+++
gi|1476730 2058 LFGLMTQ 2064
DUF1417: domain 1 of 1, from 2116 to 2131: score 3.1, E = 3.5
*->gvviDedGeivpGvev<-*
g++++ +G++v+Gv +
gi|1476730 2116 GQIVSRNGQAVDGVAI 2131
DNA_mis_repair: domain 1 of 1, from 2128 to 2151: score 4.3, E = 1.1
CS HHHHHCCE..EEEEEEET...TCCCCCCC
*->GdavaknllPlpiekedgraidfkisgfl<-*
G a++k++ l++ e++ ++++++f+
gi|1476730 2128 GVAILKEM--LEVIGEFS---GDQLQAFV 2151
Alpha_kinase: domain 1 of 1, from 2165 to 2178: score -0.1, E = 6.1
*->NLGeeGIekFfssH<-*
++G++GI+ F +H
gi|1476730 2165 DMGADGIKSFAETH 2178
Sigma54_DBD: domain 1 of 1, from 2237 to 2256: score 1.5, E = 7.4
CS XXXXXXXXXXXXXXXXXXXX
*->ksylkeklqeAkWLirsLeq<-*
+ + ++k++e+k L+++L+q
gi|1476730 2237 TIFSQDKQKEMKSLVENLKQ 2256
Tat: domain 1 of 1, from 2241 to 2260: score 2.0, E = 9.7
CS XXXXXXXXXXXX.XXXXXXX
*->edkeissedlltqlsgPlea<-*
+dk+++ + l + l+++l+a
gi|1476730 2241 QDKQKEMKSLVENLKQNLTA 2260
XLF: domain 1 of 1, from 2249 to 2279: score 3.0, E = 2.1
*->slalesqqvieeLidlLneKDaDDDFdDFQFFGiKreidkLqdkled
sl+ + +q + dlLn+K++ d+L ++++
gi|1476730 2249 SLVENLKQ--NLTADLLNMKEK--------------TFDFLRNSGHL 2279
<-*
gi|1476730 - -
HemolysinCabind: domain 1 of 6, from 2314 to 2331: score 8.6, E = 0.19
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG G+D+ y ++ +++
gi|1476730 2314 WGGRGDDVFYATGKSNIF 2331
PalH: domain 1 of 1, from 2318 to 2329: score 0.7, E = 3.8
*->GdDmlfvdptsn<-*
GdD++ ++++sn
gi|1476730 2318 GDDVFYATGKSN 2329
HemolysinCabind: domain 2 of 6, from 2332 to 2338: score 1.8, E = 22
CS E--SSS-
*->yGGaGnD<-*
+GG+GnD
gi|1476730 2332 TGGEGND 2338
HemolysinCabind: domain 3 of 6, from 2350 to 2357: score 4.0, E = 4.9
CS E--SSS-E
*->yGGaGnDt<-*
+GG+GnDt
gi|1476730 2350 FGGDGNDT 2357
Hep_Hag: domain 2 of 2, from 2397 to 2420: score 0.7, E = 50
CS ESTT-EE -STTEEEESTTTE
*->iGsnakA....sgensvAlGgnal<-*
+G+ ++++++++ ++sv +G+n++
gi|1476730 2397 SGNFNRVdtgdDQDYSVTIGNNNQ 2420
DUF1655: domain 1 of 1, from 2414 to 2425: score 1.8, E = 9.4
*->flgNgyQVEliea<-*
++gN QVEl a
gi|1476730 2414 TIGNNNQVEL-GA 2425
HemolysinCabind: domain 4 of 6, from 2437 to 2448: score 3.7, E = 5.8
CS -EEEEESSCGEE
*->DtLyGgaGnDtl<-*
++++ gaGnD+
gi|1476730 2437 NRINAGAGNDVV 2448
HemolysinCabind: domain 5 of 6, from 2456 to 2466: score 5.9, E = 1.3
CS EEEEESSCGEE
*->tLyGgaGnDtl<-*
+L+Gg+G+D l
gi|1476730 2456 VLNGGDGDDHL 2466
HemolysinCabind: domain 6 of 6, from 2478 to 2495: score 2.3, E = 16
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG+G+D + g+ +t+
gi|1476730 2478 NGGEGRDLMVLGGYQNTF 2495
Terminase_1: domain 1 of 1, from 2599 to 2613: score 1.1, E = 1.6
*->vALImAlgrAlyaee<-*
++ I+Al +A++++e
gi|1476730 2599 DSAIDALVQAMSGFE 2613
DUF2019: domain 1 of 1, from 2610 to 2626: score 4.6, E = 0.68
*->SkwfPQaGdAgmslrnLd<-*
S+++PQaGd g ++ L+
gi|1476730 2610 SGFEPQAGDNGF-IDSLE 2626
//