hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 148654490.fa
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Query sequence: gi|148654490|ref|YP_001274695.1|
Accession: [none]
Description: hypothetical protein RoseRS_0313 [Roseiflexus sp. RS-1]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF1287 Protein of unknown function (DUF1287) 1.0 3.3 1
DUF63 Membrane protein of unknown function 0.8 3.7 1
DUF526 Protein of unknown function (DUF526) 2.5 4.3 1
PEGA PEGA domain 2.1 7.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF63 1/1 24 32 .. 277 285 .] 0.8 3.7
DUF526 1/1 102 115 .. 1 14 [. 2.5 4.3
PEGA 1/1 109 132 .. 49 73 .] 2.1 7.8
DUF1287 1/1 115 127 .. 1 13 [. 1.0 3.3
Alignments of top-scoring domains:
DUF63: domain 1 of 1, from 24 to 32: score 0.8, E = 3.7
*->NtlRMvLgv<-*
+t+RM + v
gi|1486544 24 DTIRMAMNV 32
DUF526: domain 1 of 1, from 102 to 115: score 2.5, E = 4.3
*->Delakqitdalpag<-*
D la+q+ d+l+++
gi|1486544 102 DSLAQQLADLLGTV 115
PEGA: domain 1 of 1, from 109 to 132: score 2.1, E = 7.8
*->edysttvtvtagetvkvsltLtptp<-*
+d+ tv + a+e +v +tL+p++
gi|1486544 109 ADLLGTVVLAANERINV-KTLEPKD 132
DUF1287: domain 1 of 1, from 115 to 127: score 1.0, E = 3.3
*->LvaAAreqigvtv<-*
+v AA+e+i+v++
gi|1486544 115 VVLAANERINVKT 127
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