hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 148676246.fa
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Query sequence: gi|148676246|gb|EDL08193.1|
Accession: [none]
Description: nasal embryonic LHRH factor, isoform CRA_a [Mus musculus]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
IQ IQ calmodulin-binding motif 18.6 0.00024 2
TP1 Nuclear transition protein 1 3.4 2 1
PRD PRD domain 3.7 2.6 1
AMP_N Aminopeptidase P, N-terminal domain 1.9 4.4 1
TIR TIR domain 0.9 5.4 1
IMPDH IMP dehydrogenase / GMP reductase dom 0.6 6 1
c-SKI_SMAD_bind c-SKI Smad4 binding domain 1.6 6.1 1
NUP Purine nucleoside permease (NUP) -0.2 6.3 1
Orthopox_N1 Orthopoxvirus N1 protein 0.7 6.4 1
IFRD Interferon-related developmental regu -0.2 6.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
IQ 1/2 62 80 .. 1 19 [. 10.8 0.052
TP1 1/1 79 99 .. 38 54 .] 3.4 2
IQ 2/2 85 99 .. 1 15 [. 7.8 0.4
AMP_N 1/1 107 118 .. 1 12 [. 1.9 4.4
NUP 1/1 177 185 .. 1 9 [. -0.2 6.3
c-SKI_SMAD_bind 1/1 213 229 .. 82 98 .] 1.6 6.1
IFRD 1/1 214 225 .. 354 365 .] -0.2 6.5
PRD 1/1 218 230 .. 1 13 [. 3.7 2.6
TIR 1/1 265 280 .. 131 150 .] 0.9 5.4
Orthopox_N1 1/1 334 347 .. 100 113 .] 0.7 6.4
IMPDH 1/1 355 363 .] 1 9 [. 0.6 6
Alignments of top-scoring domains:
IQ: domain 1 of 2, from 62 to 80: score 10.8, E = 0.052
CS HHHCHHHHHHHHHHHHHHH
*->rraaikIQaawRGylaRkr<-*
+ a +++Qa++RGy Rkr
gi|1486762 62 QTATTTMQAVFRGYAERKR 80
TP1: domain 1 of 1, from 79 to 99: score 3.4, E = 2
*->KsRKRgDDAn....RnyRsHL<-*
K RKR D + +Rn+R HL
gi|1486762 79 KRRKRENDSAsviqRNFRKHL 99
IQ: domain 2 of 2, from 85 to 99: score 7.8, E = 0.4
CS HHHCHHHHHHHHHHH
*->rraaikIQaawRGyl<-*
++a +IQ+ +R +l
gi|1486762 85 NDSASVIQRNFRKHL 99
AMP_N: domain 1 of 1, from 107 to 118: score 1.9, E = 4.4
*->ipadefaaRRkr<-*
++a+ fa+RR+r
gi|1486762 107 VKAQTFAERRER 118
NUP: domain 1 of 1, from 177 to 185: score -0.2, E = 6.3
*->iqpKVmvIt<-*
+pKVm+I+
gi|1486762 177 LPPKVMLIS 185
c-SKI_SMAD_bind: domain 1 of 1, from 213 to 229: score 1.6, E = 6.1
CS CHHHHHHHHHHHHCC--
*->eeakLeqvLeevkekFd<-*
e+a+ e +Lee++ k +
gi|1486762 213 EHATFEDILEEIEKKLN 229
IFRD: domain 1 of 1, from 214 to 225: score -0.2, E = 6.5
*->RstFRDVlrfvE<-*
++tF D+l+ +E
gi|1486762 214 HATFEDILEEIE 225
PRD: domain 1 of 1, from 218 to 230: score 3.7, E = 2.6
CS HHHHHHHHHHHTS
*->eelleeiekklqi<-*
e++leeiekkl+i
gi|1486762 218 EDILEEIEKKLNI 230
TIR: domain 1 of 1, from 265 to 280: score 0.9, E = 5.4
CS SG.....GGCCHHHHHHHHH
*->dktersqsdrikfWkkalya<-*
+k+e d+i+fWk++
gi|1486762 265 EKEE----DMIHFWKRLSRL 280
Orthopox_N1: domain 1 of 1, from 334 to 347: score 0.7, E = 6.4
*->rmiekyfddlmidl<-*
+mie+yfd + l
gi|1486762 334 QMIETYFDFRLYRL 347
IMPDH: domain 1 of 1, from 355 to 363: score 0.6, E = 6
CS EB-GGGGEE
RF xxxxxxxxx
*->egLTFDDVL<-*
+ L+FDDVL
gi|1486762 355 KLLDFDDVL 363
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