hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 149039422.fa
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Query sequence: gi|149039422|gb|EDL93642.1|
Accession: [none]
Description: nasal embryonic LHRH factor, isoform CRA_b [Rattus norvegicus]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
IQ IQ calmodulin-binding motif 7.8 0.4 1
TP1 Nuclear transition protein 1 3.4 2 1
PRD PRD domain 3.7 2.6 1
TIR TIR domain 2.0 2.6 2
AMP_N Aminopeptidase P, N-terminal domain 1.9 4.4 1
IMPDH IMP dehydrogenase / GMP reductase dom 0.6 6 1
c-SKI_SMAD_bind c-SKI Smad4 binding domain 1.6 6.1 1
NUP Purine nucleoside permease (NUP) -0.2 6.3 1
Orthopox_N1 Orthopoxvirus N1 protein 0.7 6.4 1
IFRD Interferon-related developmental regu -0.2 6.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TIR 1/2 21 59 .. 112 150 .] 1.0 5
TP1 1/1 36 56 .. 38 54 .] 3.4 2
IQ 1/1 42 56 .. 1 15 [. 7.8 0.4
AMP_N 1/1 64 75 .. 1 12 [. 1.9 4.4
NUP 1/1 134 142 .. 1 9 [. -0.2 6.3
c-SKI_SMAD_bind 1/1 170 186 .. 82 98 .] 1.6 6.1
IFRD 1/1 171 182 .. 354 365 .] -0.2 6.5
PRD 1/1 175 187 .. 1 13 [. 3.7 2.6
TIR 2/2 222 237 .. 131 150 .] 0.9 5.4
Orthopox_N1 1/1 291 304 .. 100 113 .] 0.7 6.4
IMPDH 1/1 312 320 .] 1 9 [. 0.6 6
Alignments of top-scoring domains:
TIR: domain 1 of 2, from 21 to 59: score 1.0, E = 5
CS T-HHHHHHHHCT-SEE--SSG... ..GGCCHHHHHHHHH
*->pkqtgkFgkaflktlkwsgdkter...sqsdrikfWkkalya<-*
p q +k +++f+++++++++k e+++ s+++r f+k+++
gi|1490394 21 P-QLCK-REVFRGYAERKRRKRENdsaSVIQR-NFRKHLRMV 59
TP1: domain 1 of 1, from 36 to 56: score 3.4, E = 2
*->KsRKRgDDAn....RnyRsHL<-*
K RKR D + +Rn+R HL
gi|1490394 36 KRRKRENDSAsviqRNFRKHL 56
IQ: domain 1 of 1, from 42 to 56: score 7.8, E = 0.4
CS HHHCHHHHHHHHHHH
*->rraaikIQaawRGyl<-*
++a +IQ+ +R +l
gi|1490394 42 NDSASVIQRNFRKHL 56
AMP_N: domain 1 of 1, from 64 to 75: score 1.9, E = 4.4
*->ipadefaaRRkr<-*
++a+ fa+RR+r
gi|1490394 64 VKAQTFAERRER 75
NUP: domain 1 of 1, from 134 to 142: score -0.2, E = 6.3
*->iqpKVmvIt<-*
+pKVm+I+
gi|1490394 134 LPPKVMLIS 142
c-SKI_SMAD_bind: domain 1 of 1, from 170 to 186: score 1.6, E = 6.1
CS CHHHHHHHHHHHHCC--
*->eeakLeqvLeevkekFd<-*
e+a+ e +Lee++ k +
gi|1490394 170 EHATFEDILEEIEKKLN 186
IFRD: domain 1 of 1, from 171 to 182: score -0.2, E = 6.5
*->RstFRDVlrfvE<-*
++tF D+l+ +E
gi|1490394 171 HATFEDILEEIE 182
PRD: domain 1 of 1, from 175 to 187: score 3.7, E = 2.6
CS HHHHHHHHHHHTS
*->eelleeiekklqi<-*
e++leeiekkl+i
gi|1490394 175 EDILEEIEKKLNI 187
TIR: domain 2 of 2, from 222 to 237: score 0.9, E = 5.4
CS SG.....GGCCHHHHHHHHH
*->dktersqsdrikfWkkalya<-*
+k+e d+i+fWk++
gi|1490394 222 EKEE----DMIHFWKRLSRL 237
Orthopox_N1: domain 1 of 1, from 291 to 304: score 0.7, E = 6.4
*->rmiekyfddlmidl<-*
+mie+yfd + l
gi|1490394 291 QMIETYFDFRLYRL 304
IMPDH: domain 1 of 1, from 312 to 320: score 0.6, E = 6
CS EB-GGGGEE
RF xxxxxxxxx
*->egLTFDDVL<-*
+ L+FDDVL
gi|1490394 312 KLLDFDDVL 320
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