hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 149039423.fa
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Query sequence: gi|149039423|gb|EDL93643.1|
Accession: [none]
Description: nasal embryonic LHRH factor, isoform CRA_c [Rattus norvegicus]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PRD PRD domain 3.7 2.6 1
AMP_N Aminopeptidase P, N-terminal domain 1.9 4.4 1
TIR TIR domain 0.9 5.4 1
IMPDH IMP dehydrogenase / GMP reductase dom 0.6 6 1
c-SKI_SMAD_bind c-SKI Smad4 binding domain 1.6 6.1 1
NUP Purine nucleoside permease (NUP) -0.2 6.3 1
Orthopox_N1 Orthopoxvirus N1 protein 0.7 6.4 1
IFRD Interferon-related developmental regu -0.2 6.5 1
HNH HNH endonuclease 2.4 8.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
HNH 1/1 27 39 .. 46 58 .] 2.4 8.5
AMP_N 1/1 45 56 .. 1 12 [. 1.9 4.4
NUP 1/1 115 123 .. 1 9 [. -0.2 6.3
c-SKI_SMAD_bind 1/1 151 167 .. 82 98 .] 1.6 6.1
IFRD 1/1 152 163 .. 354 365 .] -0.2 6.5
PRD 1/1 156 168 .. 1 13 [. 3.7 2.6
TIR 1/1 203 218 .. 131 150 .] 0.9 5.4
Orthopox_N1 1/1 272 285 .. 100 113 .] 0.7 6.4
IMPDH 1/1 293 301 .] 1 9 [. 0.6 6
Alignments of top-scoring domains:
HNH: domain 1 of 1, from 27 to 39: score 2.4, E = 8.5
CS E-HHHHHHHHTT-
*->lcpkcHrrkhark<-*
lc++++ rkh r+
gi|1490394 27 LCKRENFRKHLRM 39
AMP_N: domain 1 of 1, from 45 to 56: score 1.9, E = 4.4
*->ipadefaaRRkr<-*
++a+ fa+RR+r
gi|1490394 45 VKAQTFAERRER 56
NUP: domain 1 of 1, from 115 to 123: score -0.2, E = 6.3
*->iqpKVmvIt<-*
+pKVm+I+
gi|1490394 115 LPPKVMLIS 123
c-SKI_SMAD_bind: domain 1 of 1, from 151 to 167: score 1.6, E = 6.1
CS CHHHHHHHHHHHHCC--
*->eeakLeqvLeevkekFd<-*
e+a+ e +Lee++ k +
gi|1490394 151 EHATFEDILEEIEKKLN 167
IFRD: domain 1 of 1, from 152 to 163: score -0.2, E = 6.5
*->RstFRDVlrfvE<-*
++tF D+l+ +E
gi|1490394 152 HATFEDILEEIE 163
PRD: domain 1 of 1, from 156 to 168: score 3.7, E = 2.6
CS HHHHHHHHHHHTS
*->eelleeiekklqi<-*
e++leeiekkl+i
gi|1490394 156 EDILEEIEKKLNI 168
TIR: domain 1 of 1, from 203 to 218: score 0.9, E = 5.4
CS SG.....GGCCHHHHHHHHH
*->dktersqsdrikfWkkalya<-*
+k+e d+i+fWk++
gi|1490394 203 EKEE----DMIHFWKRLSRL 218
Orthopox_N1: domain 1 of 1, from 272 to 285: score 0.7, E = 6.4
*->rmiekyfddlmidl<-*
+mie+yfd + l
gi|1490394 272 QMIETYFDFRLYRL 285
IMPDH: domain 1 of 1, from 293 to 301: score 0.6, E = 6
CS EB-GGGGEE
RF xxxxxxxxx
*->egLTFDDVL<-*
+ L+FDDVL
gi|1490394 293 KLLDFDDVL 301
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