hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            149039424.fa
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Query sequence: gi|149039424|gb|EDL93644.1|
Accession:      [none]
Description:    nasal embryonic LHRH factor, isoform CRA_d [Rattus norvegicus]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
PRD             PRD domain                                3.7        2.6   1
TIR             TIR domain                                0.9        5.4   1
IMPDH           IMP dehydrogenase / GMP reductase dom     0.6          6   1
c-SKI_SMAD_bind c-SKI Smad4 binding domain                1.6        6.1   1
NUP             Purine nucleoside permease (NUP)         -0.2        6.3   1
Orthopox_N1     Orthopoxvirus N1 protein                  0.7        6.4   1
IFRD            Interferon-related developmental regu    -0.2        6.5   1
HNH             HNH endonuclease                          2.4        8.5   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
HNH               1/1      27    39 ..    46    58 .]     2.4      8.5
NUP               1/1      85    93 ..     1     9 [.    -0.2      6.3
c-SKI_SMAD_bind   1/1     121   137 ..    82    98 .]     1.6      6.1
IFRD              1/1     122   133 ..   354   365 .]    -0.2      6.5
PRD               1/1     126   138 ..     1    13 [.     3.7      2.6
TIR               1/1     173   188 ..   131   150 .]     0.9      5.4
Orthopox_N1       1/1     242   255 ..   100   113 .]     0.7      6.4
IMPDH             1/1     263   271 .]     1     9 [.     0.6        6

Alignments of top-scoring domains:
HNH: domain 1 of 1, from 27 to 39: score 2.4, E = 8.5
                CS    E-HHHHHHHHTT-
                   *->lcpkcHrrkhark<-*
                      lc++++ rkh r+
  gi|1490394    27    LCKRENFRKHLRM    39

NUP: domain 1 of 1, from 85 to 93: score -0.2, E = 6.3
                   *->iqpKVmvIt<-*
                       +pKVm+I+
  gi|1490394    85    LPPKVMLIS    93

c-SKI_SMAD_bind: domain 1 of 1, from 121 to 137: score 1.6, E = 6.1
                CS    CHHHHHHHHHHHHCC--
                   *->eeakLeqvLeevkekFd<-*
                      e+a+ e +Lee++ k +
  gi|1490394   121    EHATFEDILEEIEKKLN    137

IFRD: domain 1 of 1, from 122 to 133: score -0.2, E = 6.5
                   *->RstFRDVlrfvE<-*
                      ++tF D+l+ +E
  gi|1490394   122    HATFEDILEEIE    133

PRD: domain 1 of 1, from 126 to 138: score 3.7, E = 2.6
                CS    HHHHHHHHHHHTS
                   *->eelleeiekklqi<-*
                      e++leeiekkl+i
  gi|1490394   126    EDILEEIEKKLNI    138

TIR: domain 1 of 1, from 173 to 188: score 0.9, E = 5.4
                CS    SG.....GGCCHHHHHHHHH
                   *->dktersqsdrikfWkkalya<-*
                      +k+e    d+i+fWk++
  gi|1490394   173    EKEE----DMIHFWKRLSRL    188

Orthopox_N1: domain 1 of 1, from 242 to 255: score 0.7, E = 6.4
                   *->rmiekyfddlmidl<-*
                      +mie+yfd   + l
  gi|1490394   242    QMIETYFDFRLYRL    255

IMPDH: domain 1 of 1, from 263 to 271: score 0.6, E = 6
                CS    EB-GGGGEE
                RF    xxxxxxxxx
                   *->egLTFDDVL<-*
                      + L+FDDVL
  gi|1490394   263    KLLDFDDVL    271

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