hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 149260648.fa
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Query sequence: gi|149260648|ref|XP_001473329.1|
Accession: [none]
Description: PREDICTED: hypothetical protein [Mus musculus]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RhoGEF RhoGEF domain 138.1 1.6e-40 1
F-box F-box domain 30.1 1.4e-07 1
PH PH domain 8.1 0.12 1
CRIC_ras_sig Connector enhancer of kinase suppress 6.6 0.33 1
ANATO Anaphylotoxin-like domain 3.0 0.33 1
SMI1_KNR4 SMI1 / KNR4 family 6.0 0.36 1
Ufm1 Ubiquitin fold modifier 1 protein 5.3 0.56 1
LRR_2 Leucine Rich Repeat 5.4 0.56 1
Stb3 Putative Sin3 binding protein 4.2 0.84 1
IL6 Interleukin-6/G-CSF/MGF family 4.0 0.85 1
Radical_SAM_N Radical SAM N-terminal 2.8 1 1
FIVAR Uncharacterised Sugar-binding Domain 4.1 1.6 1
ARID ARID/BRIGHT DNA binding domain 4.0 1.7 1
QRPTase_N Quinolinate phosphoribosyl transferas 3.9 2 1
CSE2 RNA polymerase II transcription media 3.2 2.5 1
ELK ELK domain 4.5 2.8 1
DUF1685 Protein of unknown function (DUF1685) 3.1 2.9 1
UPF0564 Uncharacterised protein family UPF056 1.2 3 1
Rad50_zn_hook Rad50 zinc hook motif 4.1 3.4 1
CRISPR_assoc CRISPR associated protein 0.9 3.8 1
MtrC Tetrahydromethanopterin S-methyltrans 0.5 4.4 1
Glyco_hydro_46 Glycosyl hydrolase family 46 1.5 4.4 1
RPN7 26S proteasome subunit RPN7 1.8 4.8 1
DUF1284 Protein of unknown function (DUF1284) 1.0 5.1 1
DUF2359 Uncharacterised conserved protein (DU -1.3 5.4 1
GerE Bacterial regulatory proteins, luxR f 3.0 5.6 1
DUF562 Protein of unknown function (DUF562) 1.3 5.7 1
Glyco_hydro_42M Beta-galactosidase trimerisation doma 0.7 6.3 1
Pyridox_oxidase Pyridoxamine 5'-phosphate oxidase 1.8 6.3 1
Mgm101p Mitochondrial genome maintenance MGM1 -1.0 6.3 1
DUF2227 Uncharacterized metal-binding protein 0.3 6.3 1
7TM_GPCR_Sri Serpentine type 7TM GPCR chemorecepto 0.2 6.4 1
DUF1833 Domain of unknown function (DUF1833) 1.6 6.5 1
TnsA_C TnsA endonuclease C terminal 1.9 6.6 1
DUF2301 Uncharacterized integral membrane pro 0.9 6.6 1
TraI_2 Putative helicase -0.1 7.7 1
PCEMA1 Acidic phosphoprotein precursor PCEMA -0.8 7.8 1
NAD-GH NAD-specific glutamate dehydrogenase -0.5 8 1
PTPA Phosphotyrosyl phosphate activator (P -0.1 8.7 1
LON ATP-dependent protease La (LON) domai 0.1 9.1 1
GSH_synth_ATP Eukaryotic glutathione synthase, ATP -1.2 9.3 1
Ribosomal_S4e Ribosomal family S4e 1.6 9.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
F-box 1/1 88 135 .. 1 46 [] 30.1 1.4e-07
Mgm101p 1/1 115 121 .. 240 246 .] -1.0 6.3
DUF1284 1/1 126 135 .. 106 115 .] 1.0 5.1
PTPA 1/1 136 149 .. 338 352 .] -0.1 8.7
GerE 1/1 164 172 .. 1 9 [. 3.0 5.6
MtrC 1/1 167 185 .. 265 283 .] 0.5 4.4
DUF1685 1/1 172 200 .. 1 29 [. 3.1 2.9
TraI_2 1/1 178 212 .. 1 35 [. -0.1 7.7
UPF0564 1/1 190 220 .. 99 143 .. 1.2 3
Glyco_hydro_42M 1/1 249 271 .. 208 231 .] 0.7 6.3
Radical_SAM_N 1/1 303 313 .. 344 354 .] 2.8 1
TnsA_C 1/1 317 349 .. 35 68 .. 1.9 6.6
CRISPR_assoc 1/1 324 341 .. 223 240 .. 0.9 3.8
NAD-GH 1/1 328 341 .. 1 14 [. -0.5 8
PCEMA1 1/1 345 354 .. 1 11 [. -0.8 7.8
DUF2359 1/1 365 374 .. 1 11 [. -1.3 5.4
DUF562 1/1 381 398 .. 1 18 [. 1.3 5.7
DUF2227 1/1 430 450 .. 169 189 .. 0.3 6.3
SMI1_KNR4 1/1 459 474 .. 127 142 .] 6.0 0.36
IL6 1/1 466 480 .. 140 154 .] 4.0 0.85
CRIC_ras_sig 1/1 475 497 .. 1 23 [. 6.6 0.33
DUF1833 1/1 506 522 .. 146 162 .] 1.6 6.5
CSE2 1/1 558 569 .. 81 92 .] 3.2 2.5
LON 1/1 567 585 .. 211 229 .] 0.1 9.1
RhoGEF 1/1 578 761 .. 1 207 [] 138.1 1.6e-40
DUF2301 1/1 615 622 .. 1 8 [. 0.9 6.6
GSH_synth_ATP 1/1 628 654 .. 1 27 [. -1.2 9.3
Ufm1 1/1 650 668 .. 58 76 .] 5.3 0.56
RPN7 1/1 671 688 .. 85 102 .. 1.8 4.8
Pyridox_oxidase 1/1 688 700 .. 1 13 [. 1.8 6.3
7TM_GPCR_Sri 1/1 689 698 .. 300 309 .] 0.2 6.4
Stb3 1/1 703 715 .. 1 16 [. 4.2 0.84
Glyco_hydro_46 1/1 733 767 .. 193 227 .] 1.5 4.4
QRPTase_N 1/1 740 759 .. 1 22 [. 3.9 2
FIVAR 1/1 741 767 .. 1 37 [. 4.1 1.6
ARID 1/1 749 769 .. 1 21 [. 4.0 1.7
Rad50_zn_hook 1/1 752 767 .. 42 57 .] 4.1 3.4
ELK 1/1 753 767 .. 8 22 .] 4.5 2.8
Ribosomal_S4e 1/1 772 809 .. 48 85 .] 1.6 9.5
LRR_2 1/1 775 783 .. 18 26 .] 5.4 0.56
ANATO 1/1 799 804 .. 33 38 .] 3.0 0.33
PH 1/1 825 907 .. 23 92 .] 8.1 0.12
Alignments of top-scoring domains:
F-box: domain 1 of 1, from 88 to 135: score 30.1, E = 1.4e-07
CS -HHHHS-HHHHHHHHTTS-HHHHHHHTTT-HHHHHHHCT- HHH HH
*->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
+ LP + l I+s+L+pkdl+++++VS+ w+ l + lw +k+
gi|1492606 88 DFSTVLPRFISLYIFSFLNPKDLCAAAQVSWPWKFLTEQDcLWMpKC 134
CS H
l<-*
+
gi|1492606 135 T 135
Mgm101p: domain 1 of 1, from 115 to 121: score -1.0, E = 6.3
*->qveYPYK<-*
qv+ P+K
gi|1492606 115 QVSWPWK 121
DUF1284: domain 1 of 1, from 126 to 135: score 1.0, E = 5.1
*->ggCeWlelGy<-*
++C W+++++
gi|1492606 126 QDCLWMPKCT 135
PTPA: domain 1 of 1, from 136 to 149: score -0.1, E = 8.7
*->yFGteLmpfepvvsg<-*
+FG +++p p ++
gi|1492606 136 KFG-WFLPYTPTQNE 149
GerE: domain 1 of 1, from 164 to 172: score 3.0, E = 5.6
CS --SS-HHHH
*->ldsLspREr<-*
ld+L+pRE+
gi|1492606 164 LDWLTPREA 172
MtrC: domain 1 of 1, from 167 to 185: score 0.5, E = 4.4
*->lskrDAaaVvwsGllPKeE<-*
l+ r+AaaV ++ PK E
gi|1492606 167 LTPREAAAVYGTLNEPKTE 185
DUF1685: domain 1 of 1, from 172 to 200: score 3.1, E = 2.9
*->kvlvkqqssepaatreeawgRrrgqmlss<-*
v + ++ep+++ ee ++Rrr + l++
gi|1492606 172 AAAVYGTLNEPKTEDEEFQERRREKCLRK 200
TraI_2: domain 1 of 1, from 178 to 212: score -0.1, E = 7.7
*->GltqPaavseqlLltprRqeLiek.Iwqrlslsrad<-*
l +P++ +e ++ rR++ ++k Iw++ ++++++
gi|1492606 178 TLNEPKTEDE-EFQERRREKCLRKiIWENIAFRKKE 212
UPF0564: domain 1 of 1, from 190 to 220: score 1.2, E = 3
*->eervEakkkaareKalesfellrerftskkkkktFKAkpLGYvPk<-
+er +++++++K+ + + +f+ kk +FKA+p P+
gi|1492606 190 QER---RREKCLRKIIWE----NIAFR---KKELFKARP----PW 220
*
gi|1492606 - -
Glyco_hydro_42M: domain 1 of 1, from 249 to 271: score 0.7, E = 6.3
CS ..---HHHHHHHHHHHHHH.TT--
*->sGrleddfldallekllaevagle<-*
+ +le++fl+a l +l ++ +++
gi|1492606 249 YEALERQFLRASLDALPKR-SNIS 271
Radical_SAM_N: domain 1 of 1, from 303 to 313: score 2.8, E = 1
*->kIPAyemIKfS<-*
+IPAyem+ S
gi|1492606 303 RIPAYEMVMES 313
TnsA_C: domain 1 of 1, from 317 to 349: score 1.9, E = 6.6
CS HHHHHHHHTTT.SBHHHHHHHHHHHCT--TTHHH
*->lilkqlkengnpttirsllkkldadynlepgeaL<-*
+++++l e+++ t+ ll+ +d++++ +++L
gi|1492606 317 DVVAVLYEHSG-VTLEGLLQLTDRALQGRKAQSL 349
CRISPR_assoc: domain 1 of 1, from 324 to 341: score 0.9, E = 3.8
*->tfqsVdFeGvLvVtDpdl<-*
++++V++eG+L+ tD++l
gi|1492606 324 EHSGVTLEGLLQLTDRAL 341
NAD-GH: domain 1 of 1, from 328 to 341: score -0.5, E = 8
*->vaLqrvlqrldrqf<-*
v+L+++lq+ dr++
gi|1492606 328 VTLEGLLQLTDRAL 341
PCEMA1: domain 1 of 1, from 345 to 354: score -0.8, E = 7.8
*->mKAisLGLiss<-*
KA sLG++ss
gi|1492606 345 -KAQSLGIFSS 354
DUF2359: domain 1 of 1, from 365 to 374: score -1.3, E = 5.4
*->HGYRiCiQAiL<-*
GY iCi +L
gi|1492606 365 -GYKICIKNVL 374
DUF562: domain 1 of 1, from 381 to 398: score 1.3, E = 5.7
*->rwseFlsrvlhdekEknV<-*
w ++srv e +++V
gi|1492606 381 FWEKLGSRVATEEEGGHV 398
DUF2227: domain 1 of 1, from 430 to 450: score 0.3, E = 6.3
*->GLelGawlHsIaDwvvsawkr<-*
G +G+ H+++Dw++++ +r
gi|1492606 430 GIATGSYQHILSDWLGPHQDR 450
SMI1_KNR4: domain 1 of 1, from 459 to 474: score 6.0, E = 0.36
*->deivvvAdSFeefLek<-*
+++ + ++SF+efLe+
gi|1492606 459 ESKLQAWSSFTEFLED 474
IL6: domain 1 of 1, from 466 to 480: score 4.0, E = 0.85
CS HHHHHHHHHHHHHHH
*->rsLeeFLefslRAlR<-*
+s+ eFLe +l ++R
gi|1492606 466 SSFTEFLEDTLKSVR 480
CRIC_ras_sig: domain 1 of 1, from 475 to 497: score 6.6, E = 0.33
*->nLksLteKLrAathnLQsaIqgR<-*
+Lks+ L+ +nLQ++I+gR
gi|1492606 475 TLKSVRKTLNPLFKNLQKSISGR 497
DUF1833: domain 1 of 1, from 506 to 522: score 1.6, E = 6.5
*->tAGydDllNqravrlry<-*
t+G+d++lN ++++ +
gi|1492606 506 TLGMDSILNNQGPAQAL 522
CSE2: domain 1 of 1, from 558 to 569: score 3.2, E = 2.5
CS HHHHHHHHHHHT
*->dlLqkldkkLer<-*
++L+kl +kL++
gi|1492606 558 EVLVKLERKLQM 569
LON: domain 1 of 1, from 567 to 585: score 0.1, E = 9.1
*->LEtldvkeRLekllelLek<-*
L++++v++R + + el ++
gi|1492606 567 LQMNSVETRAQVVRELVQS 585
RhoGEF: domain 1 of 1, from 578 to 761: score 138.1, E = 1.6e-40
*->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
v++El+++E+ Yv+ L+i+++vy+kpLr+a +s +++L++ i++iF
gi|1492606 578 VVRELVQSERRYVQMLRIVQDVYAKPLRAALSSNRAILSAANIHIIF 624
sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk
s+i i+ ++reFL+ L +r++++ ++a ++G +F+++
gi|1492606 625 SDILHILNLNREFLD-NLRDRLQEW-----------SPAHCVGEIFIKF- 661
aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd
++l++Y+ + +n+p++ +++ek +++ +p+F+ fl++ + t
gi|1492606 662 GSQLNIYTNFFNNYPVVLKTIEK--CREMTPAFRAFLKRHDKTIVTK--- 706
davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda
l+L+ LL++P R Y+ LL L +htp+ ++ ++ dL a+d+
gi|1492606 707 ---MLSLPELLIYPSRRFEEYIHLLYALRLHTPA--GHVDRGDLTTAIDQ 751
lqdlaksiNe<-*
++ +i++
gi|1492606 752 VKKYKGYIDQ 761
DUF2301: domain 1 of 1, from 615 to 622: score 0.9, E = 6.6
*->lsLstIHI<-*
ls+++IHI
gi|1492606 615 LSAANIHI 622
GSH_synth_ATP: domain 1 of 1, from 628 to 654: score -1.2, E = 9.3
CS SGGGGS-HHHHHHHHHHHHHHHHHCT-
RF xxxxxxxxxxxxxxxxxxxxxxxxxxx
*->mdylkldkklLeeLaydaldwAllnGL<-*
+l l ++L++L + w+ ++++
gi|1492606 628 LHILNLNREFLDNLRDRLQEWSPAHCV 654
Ufm1: domain 1 of 1, from 650 to 668: score 5.3, E = 0.56
CS TTSBHHHHHHHT-SEEEEE
*->PaqsAGnvFLKHGsELRli<-*
Pa G +F+K Gs L +
gi|1492606 650 PAHCVGEIFIKFGSQLNIY 668
RPN7: domain 1 of 1, from 671 to 688: score 1.8, E = 4.8
*->ffnDwdlVskyiekAksl<-*
ffn++++V+k iek++++
gi|1492606 671 FFNNYPVVLKTIEKCREM 688
Pyridox_oxidase: domain 1 of 1, from 688 to 700: score 1.8, E = 6.3
CS HHHHHHHHHCSTS
*->lteeireflaepn<-*
+t+++r+fl++++
gi|1492606 688 MTPAFRAFLKRHD 700
7TM_GPCR_Sri: domain 1 of 1, from 689 to 698: score 0.2, E = 6.4
*->tPpYRkfllr<-*
tP +R fl+r
gi|1492606 689 TPAFRAFLKR 698
Stb3: domain 1 of 1, from 703 to 715: score 4.2, E = 0.84
*->iTPamLaKfhLPelLl<-*
i+ +mL+ LPelL+
gi|1492606 703 IVTKMLS---LPELLI 715
Glyco_hydro_46: domain 1 of 1, from 733 to 767: score 1.5, E = 4.4
CS HCCTCCCT--CCHHC..CHHHHHHCCHCTT-TTEC
*->LlveanhddtskvgksveRvklldalakegNvnLK<-*
L ++a h d+ +++++vk + + + nLK
gi|1492606 733 LHTPAGHVDRGDLTTAIDQVKKYKGYIDQIKENLK 767
QRPTase_N: domain 1 of 1, from 740 to 759: score 3.9, E = 2
*->igrGDiTtealippdkrakAvi<-*
+ rGD+Tt i++ k+ k++i
gi|1492606 740 VDRGDLTT--AIDQVKKYKGYI 759
FIVAR: domain 1 of 1, from 741 to 767: score 4.1, E = 1.6
CS XHHHHHHHH.HTHHHHHTSHHH...HTS-HHHHHHHH
*->akkaLkeainnkaetlkstslydnYsnytteskaaln<-*
++ +L +ai ++ + +y y +++k++l+
gi|1492606 741 DRGDLTTAI-DQVK------KY---KGYIDQIKENLK 767
ARID: domain 1 of 1, from 749 to 769: score 4.0, E = 1.7
CS TSSTHHHHHHHHHHHHHHCCT
*->eaqtrerkeFldrLikFmekr<-*
++q++++k+++d+++++++ r
gi|1492606 749 IDQVKKYKGYIDQIKENLKMR 769
Rad50_zn_hook: domain 1 of 1, from 752 to 767: score 4.1, E = 3.4
CS HHHHHHHHHHHHHHHH
*->ikeykseldrlpeelk<-*
+k+yk ++d+++e+lk
gi|1492606 752 VKKYKGYIDQIKENLK 767
ELK: domain 1 of 1, from 753 to 767: score 4.5, E = 2.8
*->rKYsgylssLreEfs<-*
+KY+gy+ +++e +
gi|1492606 753 KKYKGYIDQIKENLK 767
Ribosomal_S4e: domain 1 of 1, from 772 to 809: score 1.6, E = 9.5
*->lhDGRtliikyddpsKAEedlikvgDsilislpeqeIv<-*
l D tli + +s A +li++ D++++ + +
gi|1492606 772 LSDVQTLICGCPTLSEANRYLIRTQDVVQLHCCDEKMD 809
LRR_2: domain 1 of 1, from 775 to 783: score 5.4, E = 0.56
*->lekLLSgCP<-*
+++L++gCP
gi|1492606 775 VQTLICGCP 783
ANATO: domain 1 of 1, from 799 to 804: score 3.0, E = 0.33
CS HHHHHH
*->AFlqCC<-*
++l+CC
gi|1492606 799 VQLHCC 804
PH: domain 1 of 1, from 825 to 907: score 8.1, E = 0.12
CS EETTEEEEEESTT SSEEEEEEGGCEEEEEECST T
*->LfddvLlyykdkk............skpkgsipLsgiqvtkvedn.k
Lf+dvLl ++++++ ++++++++ s+ L + +++++d++
gi|1492606 825 LFNDVLLVSSRSTshtpfektskttYQFTASVALPRLLIEDIPDSkY 871
CS STTEEEEEE TSEEEEEECSSHHHHHHHHHHHHHHHH
rknvFeirt.dretlllqaeseeerkeWikaiqsair<-*
kn+F +r + r +++ ++e ++++ W++ +q air
gi|1492606 872 IKNAFILRGsKR-EWICATEVSDDKFLWLSVLQHAIR 907
//