hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 149409065.fa
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Query sequence: gi|149409065|ref|XP_001508970.1|
Accession: [none]
Description: PREDICTED: similar to IGF-II mRNA-binding protein 1 [Ornithorhynchus anatinus]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RhoGEF RhoGEF domain 121.2 1.7e-35 1
F-box F-box domain 30.1 1.4e-07 1
PH PH domain 11.7 0.011 1
Birna_VP2 Birnavirus VP2 protein 3.6 0.25 1
LRR_2 Leucine Rich Repeat 6.2 0.27 1
Pkinase_Tyr Protein tyrosine kinase 2.1 1.8 1
ARID ARID/BRIGHT DNA binding domain 3.9 1.8 1
Hormone_3 Pancreatic hormone peptide 3.8 1.9 1
Spore_YpjB Sporulation protein YpjB (SpoYpjB) 2.9 2.2 1
Trp_repressor Trp repressor protein 3.8 2.3 1
MutS_III MutS domain III 2.6 2.6 1
Kin17_mid Domain of Kin17 curved DNA-binding pr 2.8 3.2 1
PD40 WD40-like Beta Propeller Repeat 2.9 3.6 1
Reoviridae_Vp9 Reoviridae VP9 0.6 4.1 1
Apolipoprotein Apolipoprotein A1/A4/E domain 1.4 4.9 1
MNHE Na+/H+ ion antiporter subunit 1.8 5.5 1
GerE Bacterial regulatory proteins, luxR f 3.0 5.8 1
Ribosomal_L29e Ribosomal L29e protein family 1.9 5.9 1
LCM Leucine carboxyl methyltransferase -0.3 5.9 1
ORF11CD3 ORF11CD3 domain 2.7 6.2 1
DUF2103 Predicted metal-binding protein (DUF2 1.9 6.8 1
Androgen_recep Androgen receptor -1.4 7.4 1
Mo25 Mo25-like -0.3 7.6 1
DUF1160 Protein of unknown function (DUF1160) 1.7 7.6 1
Clp_N Clp amino terminal domain 2.5 7.8 1
DUF2077 Uncharacterized protein conserved in 0.5 8.2 1
DUF2131 Uncharacterized protein conserved in 1.5 8.4 1
DUF1891 Domain of unknown function (DUF1891) 3.1 8.6 1
P_C P protein C-terminus -0.0 9 1
Sas10_Utp3 Sas10/Utp3/C1D family 1.9 9.2 1
HSCB_C HSCB C-terminal oligomerisation domai 1.4 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
F-box 1/1 102 149 .. 1 46 [] 30.1 1.4e-07
Androgen_recep 1/1 126 146 .. 440 460 .] -1.4 7.4
LCM 1/1 169 178 .. 321 330 .] -0.3 5.9
GerE 1/1 178 187 .. 1 10 [. 3.0 5.8
Kin17_mid 1/1 197 217 .. 115 135 .] 2.8 3.2
DUF1891 1/1 207 222 .. 14 29 .. 3.1 8.6
MNHE 1/1 209 217 .. 108 116 .] 1.8 5.5
DUF2077 1/1 217 240 .. 170 196 .. 0.5 8.2
Sas10_Utp3 1/1 247 268 .. 75 91 .] 1.9 9.2
Mo25 1/1 267 280 .. 376 389 .] -0.3 7.6
DUF2103 1/1 275 289 .. 1 14 [. 1.9 6.8
DUF2131 1/1 338 347 .. 1 10 [. 1.5 8.4
Spore_YpjB 1/1 483 501 .. 1 19 [. 2.9 2.2
Apolipoprotein 1/1 491 513 .. 65 87 .. 1.4 4.9
Pkinase_Tyr 1/1 503 513 .. 260 270 .] 2.1 1.8
ORF11CD3 1/1 528 545 .. 41 58 .] 2.7 6.2
MutS_III 1/1 548 589 .. 173 196 .. 2.6 2.6
Ribosomal_L29e 1/1 550 589 .. 1 40 [] 1.9 5.9
Trp_repressor 1/1 589 611 .. 33 55 .. 3.8 2.3
RhoGEF 1/1 597 780 .. 1 207 [] 121.2 1.7e-35
P_C 1/1 681 687 .. 1 7 [. -0.0 9
Reoviridae_Vp9 1/1 744 751 .. 273 280 .] 0.6 4.1
Hormone_3 1/1 748 778 .. 1 34 [. 3.8 1.9
Clp_N 1/1 758 773 .. 38 53 .] 2.5 7.8
HSCB_C 1/1 760 787 .. 54 80 .] 1.4 9.7
ARID 1/1 768 793 .. 1 27 [. 3.9 1.8
PD40 1/1 789 830 .. 1 41 [] 2.9 3.6
LRR_2 1/1 795 802 .. 19 26 .] 6.2 0.27
DUF1160 1/1 835 852 .. 104 124 .] 1.7 7.6
PH 1/1 842 926 .. 21 92 .] 11.7 0.011
Birna_VP2 1/1 865 887 .. 1 23 [. 3.6 0.25
Alignments of top-scoring domains:
F-box: domain 1 of 1, from 102 to 149: score 30.1, E = 1.4e-07
CS -HHHHS-HHHHHHHHTTS-HHHHHHHTTT-HHHHHHHCT- HHH HH
*->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
+ LP + l I+s+L+pkdl+++++V+++w+ l ++lw++k+
gi|1494090 102 DFSTVLPRFISLFIFSFLNPKDLCAAAQVNWHWKFLTEQDgLWRpKC 148
CS H
l<-*
gi|1494090 149 V 149
Androgen_recep: domain 1 of 1, from 126 to 146: score -1.4, E = 7.4
CS XXXXXXXXXXXXXXXXXXXXX
*->AaAsssWHtLFtAEEGqLYGP<-*
AaA WH F E L+ P
gi|1494090 126 AAAQVNWHWKFLTEQDGLWRP 146
LCM: domain 1 of 1, from 169 to 178: score -0.3, E = 5.9
CS TTEEEEEEEE
*->qHYcLvhAss<-*
qHY+ ++A+
gi|1494090 169 QHYIACVATL 178
GerE: domain 1 of 1, from 178 to 187: score 3.0, E = 5.8
CS --SS-HHHHH
*->ldsLspREre<-*
ld+LspRE++
gi|1494090 178 LDWLSPREAS 187
Kin17_mid: domain 1 of 1, from 197 to 217: score 2.8, E = 3.2
*->kekqekddEereqklleeQIk<-*
k +qe+++E ++k+l+++I
gi|1494090 197 KAQQEEGEERQREKFLRKMIW 217
DUF1891: domain 1 of 1, from 207 to 222: score 3.1, E = 8.6
*->QRLyFLRkLkKanlpQ<-*
QR +FLRk ++ ++ Q
gi|1494090 207 QREKFLRKMIWKRMVQ 222
MNHE: domain 1 of 1, from 209 to 217: score 1.8, E = 5.5
*->EkylKkife<-*
Ek+l+k+ +
gi|1494090 209 EKFLRKMIW 217
DUF2077: domain 1 of 1, from 217 to 240: score 0.5, E = 8.2
*->wqgvaaarrrlrrlrrvPlWtvvaala<-*
w+ +++rr l r +P+W v ++++
gi|1494090 217 WKRMVQQRRELFR--IRPPW-VSGTCC 240
Sas10_Utp3: domain 1 of 1, from 247 to 268: score 1.9, E = 9.2
*->r.HP....vmeeLvrlRvyleK<-*
r HP+ +++mee ++l + leK
gi|1494090 247 RvHPrlsqAMEESMELSSALEK 268
Mo25: domain 1 of 1, from 267 to 280: score -0.3, E = 7.6
*->EKefiikqIesLpp<-*
EK ++++++e+Lp+
gi|1494090 267 EKRLVLESVEALPK 280
DUF2103: domain 1 of 1, from 275 to 289: score 1.9, E = 6.8
*->vekppkeK.lGGsHs<-*
ve++pk+K++ GsHs
gi|1494090 275 VEALPKRKnVAGSHS 289
DUF2131: domain 1 of 1, from 338 to 347: score 1.5, E = 8.4
*->VPkLieaTGM<-*
VP L e TGM
gi|1494090 338 VPLLYEHTGM 347
Spore_YpjB: domain 1 of 1, from 483 to 501: score 2.9, E = 2.2
*->swkELndLSDevLQLvKqq<-*
+w+ L +L e LQLv+ q
gi|1494090 483 TWNGLAELVEETLQLVRKQ 501
Apolipoprotein: domain 1 of 1, from 491 to 513: score 1.4, E = 4.9
CS TT---HHHHHHHHHHHHHHHHHH
*->vgqnleelRqklaPyaeeLrkrl<-*
v++ l+ +R++l P+ +eL+k l
gi|1494090 491 VEETLQLVRKQLRPHFKELQKNL 513
Pkinase_Tyr: domain 1 of 1, from 503 to 513: score 2.1, E = 1.8
CS S-HHHHHHHHH
*->RPtFselveeL<-*
RP F+el+ L
gi|1494090 503 RPHFKELQKNL 513
ORF11CD3: domain 1 of 1, from 528 to 545: score 2.7, E = 6.2
*->earieeledqlQitLpll<-*
+ar+++l++ + i+ ++l
gi|1494090 528 VARVKTLRETAGILVDGL 545
MutS_III: domain 1 of 1, from 548 to 589: score 2.6, E = 2.6
CS .-SSSTSSS-B-T HHHHHHHHHHH
RF xxxxxxxxxxxxx xxxxxxxxxxx
*->lPleireGglIks..................alalEkelfee<-*
l++e +eG++I ++++++++++++++ + + +++lE +l e+
gi|1494090 548 LSKEKSEGNVIEDhsrsrnrskrenelkfevLVELERKLQED 589
Ribosomal_L29e: domain 1 of 1, from 550 to 589: score 1.9, E = 5.9
*->KsKnHtnHnqnkKahRnGikkpkkkryeslkgvDaKflrn<-*
K K n + Rn k+ + ++e l + K+ ++
gi|1494090 550 KEKSEGNVIEDHSRSRNRSKRENELKFEVLVELERKLQED 589
Trp_repressor: domain 1 of 1, from 589 to 611: score 3.8, E = 2.3
*->eaLaqRlrvvkeLLrgeltqreI<-*
+a+ R +vv eLL+ e+t+ ++
gi|1494090 589 DAVEKRTKVVGELLKSERTYVQV 611
RhoGEF: domain 1 of 1, from 597 to 780: score 121.2, E = 1.7e-35
*->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
v+ Ell +E++Yv+ Lei+++vy +pL++a +s +++L++ i++iF
gi|1494090 597 VVGELLKSERTYVQVLEIVRDVYVAPLKAAVASNRAILNAANIHIIF 643
sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk
s+i i+e++++FL+ +L+ r++++ +aq++G +F ++
gi|1494090 644 SDILGILELNSHFLD-ELTGRLQEW-----------GPAQCVGEIFTKF- 680
aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd
++l Y+++++n+ + + ++k +++++p F+ fl++ + +t
gi|1494090 681 GRQLHTYTSFLNNYSVILKSIDK--CRERIPLFRAFLKRHDQTIATK--- 725
davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda
+Lq LLl+P R Y+ LL L +htp+ ++ ++edL a+++
gi|1494090 726 ---MMSLQELLLYPTKRFEEYINLLYALRLHTPS--EHADREDLTTAIEQ 770
lqdlaksiNe<-*
++ i++
gi|1494090 771 IRKYRGFIDQ 780
P_C: domain 1 of 1, from 681 to 687: score -0.0, E = 9
*->SRQIHTY<-*
RQ HTY
gi|1494090 681 GRQLHTY 687
Reoviridae_Vp9: domain 1 of 1, from 744 to 751: score 0.6, E = 4.1
CS HHHHHHHH
*->INlLYaLa<-*
INlLYaL
gi|1494090 744 INLLYALR 751
Hormone_3: domain 1 of 1, from 748 to 778: score 3.8, E = 1.9
CS .TTSSS-SSTTSTSSCCHSHHHHHHHHHHHHHHC
*->yPskdfPenPGddaspEeelaqYlraLrqYinli<-*
y ++ ++P++ a E+ l ++r+Y +i
gi|1494090 748 YALR--LHTPSEHADRED-LTTAIEQIRKYRGFI 778
Clp_N: domain 1 of 1, from 758 to 773: score 2.5, E = 7.8
CS TS-HHHHHHHHHHHHH
*->Gvdldalreaiekllg<-*
++d ++l +aie++++
gi|1494090 758 HADREDLTTAIEQIRK 773
HSCB_C: domain 1 of 1, from 760 to 787: score 1.4, E = 9.7
CS HTT-HHHHHHHHHHHH HHHHHHHHHHH
*->esqdwdaAadlvrkLr.FldKLeqeveq<-*
+++d+ A +++rk r+F+d L+q v++
gi|1494090 760 DREDLTTAIEQIRKYRgFIDQLKQNVNK 787
ARID: domain 1 of 1, from 768 to 793: score 3.9, E = 1.8
CS TSSTHHHHHHHHHHHHHHCCTTSTSSS
*->eaqtrerkeFldrLikFmekrgtpltk<-*
++q r++++F+d+L+ + +k+ ++k
gi|1494090 768 IEQIRKYRGFIDQLKQNVNKKDQ-MLK 793
PD40: domain 1 of 1, from 789 to 830: score 2.9, E = 3.6
*->grltntsg..eggPtwSPDGktivFssnrgdgddgsGsfd...iyv<
++++t++ +g+Pt++ D ++++ + ++ ++ d++ i+
gi|1494090 789 DQMLKTQRiiSGCPTLTEDNRYLIRVQDVA----QLRYCDediIFS 830
-*
gi|1494090 - -
LRR_2: domain 1 of 1, from 795 to 802: score 6.2, E = 0.27
*->ekLLSgCP<-*
++++SgCP
gi|1494090 795 QRIISGCP 802
DUF1160: domain 1 of 1, from 835 to 852: score 1.7, E = 7.6
*->deIndlaeFLVtEiNnAiiyq<-*
++I+dl+ FL +N+A+++
gi|1494090 835 EHIHDLSLFL---FNDALVVS 852
PH: domain 1 of 1, from 842 to 926: score 11.7, E = 0.011
CS EEEETTEEEEEESTT SSEEEEEEGGCEEEEEECST
*->fvLfddvLlyykdkk............skpkgsipLsgiqvtkvedn
++Lf+d L+ + ++++ ++ ++++++ s+ L + v++++d+
gi|1494090 842 LFLFNDALVVSSRGIshspferaskttYRFLASVALPRLFVEDIPDS 888
CS TSTTEEEEEE TSEEEEEECSSHHHHHHHHHHHHHHHH
.krknvFeirt.dretlllqaeseeerkeWikaiqsair<-*
+ kn+F + ++r +++ ++e e+++ +W++ +q+ai+
gi|1494090 889 qYVKNAFILQApTR-QWICSTEVEDDKFTWLSVLQRAIK 926
Birna_VP2: domain 1 of 1, from 865 to 887: score 3.6, E = 0.25
*->tnttveYLrSLLlPetGpaSIPD<-*
+tt ++L S lP + +IPD
gi|1494090 865 SKTTYRFLASVALPRLFVEDIPD 887
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