hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 149722980.fa
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Query sequence: gi|149722980|ref|XP_001504475.1|
Accession: [none]
Description: PREDICTED: similar to F-box only protein 16 [Equus caballus]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RhoGEF RhoGEF domain 122.0 9.8e-36 1
F-box F-box domain 31.5 5.5e-08 2
NikR_C NikR C terminal nickel binding domain 8.1 0.14 1
SMI1_KNR4 SMI1 / KNR4 family 6.5 0.25 1
ANATO Anaphylotoxin-like domain 3.3 0.27 1
Jnk-SapK_ap_N JNK_SAPK-associated protein-1 5.7 0.28 1
PH PH domain 6.3 0.36 1
DUF2227 Uncharacterized metal-binding protein 4.1 0.4 1
DUF444 Protein of unknown function (DUF444) 4.0 0.55 1
Stb3 Putative Sin3 binding protein 4.7 0.57 1
Alum_res Aluminium resistance protein 1.8 1.1 1
RPN7 26S proteasome subunit RPN7 3.6 1.5 1
PsbI Photosystem II reaction centre I prot 3.9 2.3 1
MipZ ATPase MipZ 1.7 2.4 1
Ribosomal_L29e Ribosomal L29e protein family 3.1 2.5 1
TolA TolA protein 1.0 2.6 1
ELK ELK domain 4.1 3.5 1
Stk19 Serine-threonine protein kinase 19 1.1 3.5 1
Rcd1 Cell differentiation family, Rcd1-lik 0.9 3.7 1
HTH_3 Helix-turn-helix 3.9 3.8 1
eRF1_2 eRF1 domain 2 2.7 3.8 1
DUF1284 Protein of unknown function (DUF1284) 1.4 3.8 1
tRNA_int_endo_N tRNA intron endonuclease, N-terminal 3.5 3.8 1
NIF3 NIF3 (NGG1p interacting factor 3) 1.6 4.4 1
IL6 Interleukin-6/G-CSF/MGF family 1.5 4.7 1
Neisseria_PilC Neisseria PilC protein -1.7 4.7 1
PLA2_inh Phospholipase A2 inhibitor 0.6 4.9 1
DUF1601 Protein of unknown function (DUF1601) 3.3 4.9 1
Baculo_helicase Baculovirus DNA helicase -2.0 5.6 1
GerE Bacterial regulatory proteins, luxR f 3.0 5.6 1
Rod-binding Rod binding protein 2.8 5.8 1
Mgm101p Mitochondrial genome maintenance MGM1 -1.0 6.3 1
DUF593 Protein of unknown function, DUF593 2.8 6.3 1
APH Phosphotransferase enzyme family 0.7 6.5 1
Ribosomal_L18p Ribosomal L18p/L5e family 1.7 7.5 1
DWNN DWNN domain 1.4 8.6 1
Amidase_3 N-acetylmuramoyl-L-alanine amidase -0.1 8.9 1
TSP_C Thrombospondin C-terminal region -0.5 9 1
Phospholip_A2_1 Phospholipase A2 1.0 9.1 1
Rad50_zn_hook Rad50 zinc hook motif 2.5 9.2 1
GSH_synth_ATP Eukaryotic glutathione synthase, ATP -1.2 9.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Neisseria_PilC 1/1 16 24 .. 1 10 [. -1.7 4.7
PsbI 1/1 70 93 .. 1 24 [. 3.9 2.3
Baculo_helicase 1/1 74 86 .. 1271 1283 .] -2.0 5.6
F-box 1/2 76 123 .. 1 46 [] 30.2 1.3e-07
Mgm101p 1/1 103 109 .. 240 246 .] -1.0 6.3
DUF1284 1/1 114 123 .. 106 115 .] 1.4 3.8
GerE 1/1 152 160 .. 1 9 [. 3.0 5.6
Stk19 1/1 163 189 .. 69 96 .. 1.1 3.5
NIF3 1/1 218 237 .. 1 20 [. 1.6 4.4
Rod-binding 1/1 229 243 .. 40 54 .] 2.8 5.8
MipZ 1/1 231 255 .. 183 207 .. 1.7 2.4
eRF1_2 1/1 232 251 .. 125 144 .] 2.7 3.8
tRNA_int_endo_N 1/1 307 327 .. 58 81 .] 3.5 3.8
NikR_C 1/1 309 319 .. 1 11 [. 8.1 0.14
Ribosomal_L18p 1/1 398 406 .. 137 145 .] 1.7 7.5
DUF2227 1/1 423 443 .. 169 189 .. 4.1 0.4
SMI1_KNR4 1/1 452 467 .. 127 142 .] 6.5 0.25
IL6 1/1 459 473 .. 140 154 .] 1.5 4.7
DUF593 1/1 462 483 .. 1 22 [. 2.8 6.3
Alum_res 1/1 465 487 .. 1 23 [. 1.8 1.1
Rcd1 1/1 470 486 .. 249 265 .] 0.9 3.7
DUF1601 1/1 506 515 .. 28 37 .] 3.3 4.9
Amidase_3 1/1 511 521 .. 255 265 .] -0.1 8.9
HTH_3 1/1 545 567 .. 37 59 .] 3.9 3.8
TSP_C 1/1 545 555 .. 1 11 [. -0.5 9
RhoGEF 1/1 571 754 .. 1 207 [] 122.0 9.8e-36
GSH_synth_ATP 1/1 621 647 .. 1 27 [. -1.2 9.4
APH 1/1 629 641 .. 244 256 .] 0.7 6.5
DWNN 1/1 650 662 .. 1 13 [. 1.4 8.6
Phospholip_A2_1 1/1 654 678 .. 100 127 .] 1.0 9.1
RPN7 1/1 664 682 .. 85 103 .. 3.6 1.5
DUF444 1/1 682 694 .. 445 457 .] 4.0 0.55
Stb3 1/1 696 708 .. 1 16 [. 4.7 0.57
Jnk-SapK_ap_N 1/1 745 759 .. 145 159 .] 5.7 0.28
Rad50_zn_hook 1/1 745 760 .. 42 57 .] 2.5 9.2
ELK 1/1 746 760 .. 8 22 .] 4.1 3.5
ANATO 1/1 792 797 .. 33 38 .] 3.3 0.27
PLA2_inh 1/1 792 804 .. 91 103 .] 0.6 4.9
PH 1/1 816 900 .. 21 92 .] 6.3 0.36
Ribosomal_L29e 1/1 828 867 .. 1 40 [] 3.1 2.5
TolA 1/1 836 856 .. 1 22 [. 1.0 2.6
F-box 2/2 837 857 .. 28 46 .] 1.3 24
Alignments of top-scoring domains:
Neisseria_PilC: domain 1 of 1, from 16 to 24: score -1.7, E = 4.7
*->mnKtlKRqvF<-*
nKtl Rq F
gi|1497229 16 -NKTLNRQLF 24
PsbI: domain 1 of 1, from 70 to 93: score 3.9, E = 2.3
*->mltLkifvYavvilFvsLFiFGfL<-*
m + k+ +v+ F+sL iF fL
gi|1497229 70 MHVAKVDFSTVLPRFLSLHIFSFL 93
Baculo_helicase: domain 1 of 1, from 74 to 86: score -2.0, E = 5.6
*->kkDFntnvPkFKc<-*
k DF t+ P+F +
gi|1497229 74 KVDFSTVLPRFLS 86
F-box: domain 1 of 2, from 76 to 123: score 30.2, E = 1.3e-07
CS -HHHHS-HHHHHHHHTTS-HHHHHHHTTT-HHHHHHHCT- HHH HH
*->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
+ LP l l+I+s+L+pkdl+++++VS+ w+ l + lw +k+
gi|1497229 76 DFSTVLPRFLSLHIFSFLNPKDLCVAAQVSWPWKFLTEQDcLWMpKC 122
CS H
l<-*
+
gi|1497229 123 I 123
Mgm101p: domain 1 of 1, from 103 to 109: score -1.0, E = 6.3
*->qveYPYK<-*
qv+ P+K
gi|1497229 103 QVSWPWK 109
DUF1284: domain 1 of 1, from 114 to 123: score 1.4, E = 3.8
*->ggCeWlelGy<-*
++C W+++++
gi|1497229 114 QDCLWMPKCI 123
GerE: domain 1 of 1, from 152 to 160: score 3.0, E = 5.6
CS --SS-HHHH
*->ldsLspREr<-*
ld+L+pRE+
gi|1497229 152 LDWLTPREA 160
Stk19: domain 1 of 1, from 163 to 189: score 1.1, E = 3.5
*->LYslvqrdrTqVdReLedlqkkGeiRlv<-*
+Y+ ++ +++ d+eL++ q+++ +R+v
gi|1497229 163 VYGTLN-EPKTGDEELQERQREKCLRKV 189
NIF3: domain 1 of 1, from 218 to 237: score 1.6, E = 4.4
*->leefappelaefdwDnnGLq<-*
le+ + p+l +++ ++GLq
gi|1497229 218 LESRYQPRLSQTSRGRVGLQ 237
Rod-binding: domain 1 of 1, from 229 to 243: score 2.8, E = 5.8
*->akggGiGLAdmlyrQ<-*
+++g +GL +++++Q
gi|1497229 229 TSRGRVGLQEAVEKQ 243
MipZ: domain 1 of 1, from 231 to 255: score 1.7, E = 2.4
*->RNRLstleARNkrrvedaLneLSKR<-*
R R++ +eA+ k++v+++L++L +R
gi|1497229 231 RGRVGLQEAVEKQLVSASLEALPRR 255
eRF1_2: domain 1 of 1, from 232 to 251: score 2.7, E = 3.8
CS XXXXXXXXXXXX--S-----
*->geaGlnEvlekptvadvLsd<-*
g++Gl E++ek v+ L+
gi|1497229 232 GRVGLQEAVEKQLVSASLEA 251
tRNA_int_endo_N: domain 1 of 1, from 307 to 327: score 3.5, E = 3.8
CS HHT.TSEEEE..CTTCCE-HHHHH
*->lerLGkLevvdtdegdelsfeell<-*
++ G+++vv +e +l+ e ll
gi|1497229 307 VRA-GVISVV--YEHSGLTLESLL 327
NikR_C: domain 1 of 1, from 309 to 319: score 8.1, E = 0.14
CS EEEEEEEEETT
*->vGtitlVYDHh<-*
+G+i++VY H+
gi|1497229 309 AGVISVVYEHS 319
Ribosomal_L18p: domain 1 of 1, from 398 to 406: score 1.7, E = 7.5
CS HHHCCHB--
*->gArEaGLnf<-*
gA EaG+++
gi|1497229 398 GASEAGMEV 406
DUF2227: domain 1 of 1, from 423 to 443: score 4.1, E = 0.4
*->GLelGawlHsIaDwvvsawkr<-*
G +G+ H+++Dw++ +w+r
gi|1497229 423 GIATGSYQHILSDWLGRPWER 443
SMI1_KNR4: domain 1 of 1, from 452 to 467: score 6.5, E = 0.25
*->deivvvAdSFeefLek<-*
+++ +v++S+++fLe+
gi|1497229 452 ESKLQVWSSLTDFLED 467
IL6: domain 1 of 1, from 459 to 473: score 1.5, E = 4.7
CS HHHHHHHHHHHHHHH
*->rsLeeFLefslRAlR<-*
+sL +FLe +l + R
gi|1497229 459 SSLTDFLEDTLKSAR 473
DUF593: domain 1 of 1, from 462 to 483: score 2.8, E = 6.3
*->verLrealeaerkaladLykEL<-*
++ L+ +l+++rk l+ L+kEL
gi|1497229 462 TDFLEDTLKSARKQLSPLFKEL 483
Alum_res: domain 1 of 1, from 465 to 487: score 1.8, E = 1.1
*->veelleqAeqdilpifkeiDeiv<-*
+e++l++A ++++p+fke+++++
gi|1497229 465 LEDTLKSARKQLSPLFKELQKNI 487
Rcd1: domain 1 of 1, from 470 to 486: score 0.9, E = 3.7
*->ettkrwLaqLlknLskn<-*
+++++ L L k L+kn
gi|1497229 470 KSARKQLSPLFKELQKN 486
DUF1601: domain 1 of 1, from 506 to 515: score 3.3, E = 4.9
*->FnpqeIaNtL<-*
+n q+Ia++L
gi|1497229 506 LNNQGIAQAL 515
Amidase_3: domain 1 of 1, from 511 to 521: score -0.1, E = 8.9
CS HHHHHHHHHHH
*->lAeAIakGIlr<-*
+A+A+a+G+++
gi|1497229 511 IAQALAEGLTE 521
HTH_3: domain 1 of 1, from 545 to 567: score 3.9, E = 3.8
CS SSTSBHHHHHHHHHHTTSHHHHH
*->krePsletlkklaeaLgvsldel<-*
+++P+ e+l++l++ L+v+ +e
gi|1497229 545 QNDPNFEVLVQLEKKLQVDSAEK 567
TSP_C: domain 1 of 1, from 545 to 555: score -0.5, E = 9
CS S----EE----
*->QaDPNWvVraq<-*
Q+DPN V+ q
gi|1497229 545 QNDPNFEVLVQ 555
RhoGEF: domain 1 of 1, from 571 to 754: score 122.0, E = 9.8e-36
*->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
v++Ell++E+ Yv+ Le+l++vy pLr+a +s +++L++ i++iF
gi|1497229 571 VVRELLQSERRYVQMLEMLRDVYVTPLRAALSSNRAILSAANIQIIF 617
sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk
s+i i++++r+FL+ L +r++++ +a ++G +F ++
gi|1497229 618 SDILQILSLNRQFLD-NLRDRLREW-----------GPAHCVGEIFTKF- 654
aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd
++l+ Y+ + +n+p++ +++ek +++ p+F+ fl+++ + + t
gi|1497229 655 GSQLNTYTNFFNNYPVVLKTIEK--CREMMPAFRAFLKRRDKTVVTK--- 699
davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda
l+L+ LLl+P R Y LL L +htp+ ++ ++ L a+d
gi|1497229 700 ---MLSLPELLLYPSRRFEEYLNLLYALRLHTPA--EHVDRGTLTTAIDH 744
lqdlaksiNe<-*
++ +i++
gi|1497229 745 IKKYKDYIDQ 754
GSH_synth_ATP: domain 1 of 1, from 621 to 647: score -1.2, E = 9.4
CS SGGGGS-HHHHHHHHHHHHHHHHHCT-
RF xxxxxxxxxxxxxxxxxxxxxxxxxxx
*->mdylkldkklLeeLaydaldwAllnGL<-*
+l+l ++L++L ++ w ++++
gi|1497229 621 LQILSLNRQFLDNLRDRLREWGPAHCV 647
APH: domain 1 of 1, from 629 to 641: score 0.7, E = 6.5
CS ....-------HH
*->qfaapgparlrel<-*
qf++ +++rlre+
gi|1497229 629 QFLDNLRDRLREW 641
DWNN: domain 1 of 1, from 650 to 662: score 1.4, E = 8.6
*->vyYKFkSqkdysr<-*
++ KF+Sq+++++
gi|1497229 650 IFTKFGSQLNTYT 662
Phospholip_A2_1: domain 1 of 1, from 654 to 678: score 1.0, E = 9.1
CS HHHTG-GG--GGGBTCGGCGSHSSHHHT
*->FarnlpnTYNkkywaYpsnicteeserC<-*
F l nTY + +Yp + t e+C
gi|1497229 654 FGSQL-NTYTNFFNNYPVVLKT--IEKC 678
RPN7: domain 1 of 1, from 664 to 682: score 3.6, E = 1.5
*->ffnDwdlVskyiekAksli<-*
ffn++++V+k iek+++++
gi|1497229 664 FFNNYPVVLKTIEKCREMM 682
DUF444: domain 1 of 1, from 682 to 694: score 4.0, E = 0.55
*->ypVfrelFqkeea<-*
+p+fr +++++++
gi|1497229 682 MPAFRAFLKRRDK 694
Stb3: domain 1 of 1, from 696 to 708: score 4.7, E = 0.57
*->iTPamLaKfhLPelLl<-*
++ +mL+ LPelLl
gi|1497229 696 VVTKMLS---LPELLL 708
Jnk-SapK_ap_N: domain 1 of 1, from 745 to 759: score 5.7, E = 0.28
*->LkkyvEyvErqkdei<-*
+kky++y+++ k i
gi|1497229 745 IKKYKDYIDQMKQDI 759
Rad50_zn_hook: domain 1 of 1, from 745 to 760: score 2.5, E = 9.2
CS HHHHHHHHHHHHHHHH
*->ikeykseldrlpeelk<-*
ik+yk+++d+ + +++
gi|1497229 745 IKKYKDYIDQMKQDIN 760
ELK: domain 1 of 1, from 746 to 760: score 4.1, E = 3.5
*->rKYsgylssLreEfs<-*
+KY++y+ ++++++
gi|1497229 746 KKYKDYIDQMKQDIN 760
ANATO: domain 1 of 1, from 792 to 797: score 3.3, E = 0.27
CS HHHHHH
*->AFlqCC<-*
A+l+CC
gi|1497229 792 AQLHCC 797
PLA2_inh: domain 1 of 1, from 792 to 804: score 0.6, E = 4.9
*->griaCCdeeeCet<-*
++ +CCdee+
gi|1497229 792 AQLHCCDEERSSS 804
PH: domain 1 of 1, from 816 to 900: score 6.3, E = 0.36
CS EEEETTEEEEEESTT SSEEEEEEGGCEEEEEECST
*->fvLfddvLlyykdkk............skpkgsipLsgiqvtkvedn
++Lf+d Ll ++++++ ++++++++ s+ L + +++++d+
gi|1497229 816 LFLFNDALLVSNRSTshtpfertskstHQFIASVALHRLLIEDISDT 862
CS TSTTEEEEEE TSEEEEEECSSHHHHHHHHHHHHHHHH
.krknvFeirt.dretlllqaeseeerkeWikaiqsair<-*
+ kn+F + + +++ ++e e+++ W++ +q+air
gi|1497229 863 kYIKNAFILQGpKC-EWICATEGEDDKFLWLSVLQNAIR 900
Ribosomal_L29e: domain 1 of 1, from 828 to 867: score 3.1, E = 2.5
*->KsKnHtnHnqnkKahRnGikkpkkkryeslkgvDaKflrn<-*
+s Ht + K i +r D+K+++n
gi|1497229 828 RSTSHTPFERTSKSTHQFIASVALHRLLIEDISDTKYIKN 867
TolA: domain 1 of 1, from 836 to 856: score 1.0, E = 2.6
CS XXXXXXXXXXXXXXXXXXXXXX
*->keqndklkrAiiISvvLHiiLi<-*
e+ +k + +i Sv+LH +Li
gi|1497229 836 -ERTSKSTHQFIASVALHRLLI 856
F-box: domain 2 of 2, from 837 to 857: score 1.3, E = 24
CS TT-HHHHHHHCT- HHH HHH
*->lVSkrwrslvdsl.lwk.kll<-*
++Sk+ ++++ s+ l++ +
gi|1497229 837 RTSKSTHQFIASVaLHRlLIE 857
//