hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 150384637.fa
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Query sequence: gi|150384637|ref|ZP_01923318.1|
Accession: [none]
Description: polymorphic outer membrane protein [Victivallis vadensis ATCC BAA-548]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Chlam_PMP Chlamydia polymorphic membrane protei 214.9 2.1e-61 22
OmpA_membrane OmpA-like transmembrane domain 10.4 0.021 1
Fil_haemagg Haemagluttinin repeat 9.1 0.069 2
DUF547 Protein of unknown function, DUF547 6.4 0.29 1
SGL SMP-30/Gluconolaconase/LRE-like regio 3.8 0.8 1
A2M_N_2 Alpha-2-macroglobulin family N-termin 5.1 0.81 1
Chlorovi_GP_rpt Chlorovirus glycoprotein repeat 5.2 1.1 3
MucBP MucBP domain 5.1 1.2 1
PSGP Apopolysialoglycoprotein (PSGP) 5.9 1.3 1
Glug The GLUG motif 4.6 1.6 1
CLP_protease Clp protease 2.5 2.4 1
YbbR YbbR-like protein 3.4 2.5 1
PAAR_motif PAAR motif 4.9 2.6 1
MAP MAP domain 3.6 2.7 1
DUF2341 Domain of unknown function (DUF2341) 2.4 2.8 1
FliX Class II flagellar assembly regulator 1.4 2.9 1
TSGP1 Tick salivary peptide group 1 2.4 3.2 1
FBA F-box associated region 1.6 3.3 1
ABC_ATPase Predicted ATPase of the ABC class 1.5 3.3 1
Cerato-platanin Cerato-platanin 2.5 3.4 1
Flagellin_C Bacterial flagellin C-terminus 3.7 3.4 1
DUF239 Arabidopsis proteins of unknown funct 1.8 3.8 1
FlaE Flagellar basal body protein FlaE 2.1 4.2 1
UPF0164 Uncharacterised protein family (UPF01 0.6 4.3 1
Hep_Hag Hep_Hag 4.6 4.3 1
Aa_trans Transmembrane amino acid transporter 1.3 4.4 1
5_3_exonuc 5'-3' exonuclease, C-terminal SAM fol 2.2 5 1
SecG Preprotein translocase SecG subunit 3.1 5.5 1
Spore_III_AE Stage III sporulation protein AE (spo 1.0 6.2 1
Rsd_AlgQ Regulator of RNA polymerase sigma(70) 0.8 6.2 1
DUF1180 Protein of unknown function (DUF1180) 0.7 6.3 1
DUF1495 Winged helix DNA-binding domain (DUF1 1.4 6.5 1
ACP53EA Drosophila ACP53EA protein 0.2 6.7 1
Tweety Tweety -0.0 6.7 1
DegV Uncharacterised protein, DegV family 1.0 6.9 1
Cu_amine_oxidN2 Copper amine oxidase, N2 domain 2.2 7.1 1
PilN Fimbrial assembly protein (PilN) 0.6 7.8 1
DUF1869 Domain of unknown function (DUF1869) -0.7 7.9 1
DUF1265 Protein of unknown function (DUF1265) 1.6 8 1
PD-C2-AF1 POU domain, class 2, associating fact -0.7 8 1
DUF1281 Protein of unknown function (DUF1281) 1.0 8 2
DUF1597 Protein of unknown function (DUF1597) 0.6 8 1
Recep_L_domain Receptor L domain 0.9 8.3 1
DUF678 Protein of unknown function (DUF678) 1.2 8.3 1
Attacin_N Attacin, N-terminal region 2.3 8.5 1
DUF1200 Protein of unknown function (DUF1200) 2.0 8.9 1
TT_ORF2a pORF2a truncated protein 0.9 9 1
AbfB Alpha-L-arabinofuranosidase B (ABFB) 0.5 9.1 1
CdhD CO dehydrogenase/acetyl-CoA synthase -0.3 9.3 1
DUF2431 Domain of unknown function (DUF2431) -0.6 9.4 1
S1-P1_nuclease S1/P1 Nuclease -1.4 9.5 1
A2M_comp A-macroglobulin complement component -0.5 9.5 1
TniQ TniQ -1.5 9.6 1
PuR_N Bacterial purine repressor, N-termina 2.2 9.6 1
FTP Fungalysin/Thermolysin Propeptide Mot 2.2 9.6 1
Toluene_X Outer membrane protein transport prot -1.0 9.7 1
EMP70 Endomembrane protein 70 -1.7 9.7 1
DUF728 Protein of unknown function (DUF728) 0.1 9.8 1
Allantoicase Allantoicase repeat 0.1 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF1281 1/2 73 92 .. 1 20 [. 0.3 13
ABC_ATPase 1/1 167 184 .. 1 18 [. 1.5 3.3
Tweety 1/1 167 188 .. 1 23 [. -0.0 6.7
Rsd_AlgQ 1/1 242 259 .. 150 170 .] 0.8 6.2
MucBP 1/1 248 301 .. 13 80 .. 5.1 1.2
PSGP 1/1 253 265 .. 1 13 [] 5.9 1.3
MAP 1/1 280 300 .. 1 24 [. 3.6 2.7
Fil_haemagg 1/2 332 400 .. 1 75 [] 6.6 0.35
Chlorovi_GP_rpt 1/3 348 361 .. 1 14 [. 1.9 12
Chlam_PMP 1/22 380 399 .. 1 19 [] 12.3 0.047
Attacin_N 1/1 383 395 .. 1 13 [. 2.3 8.5
Chlam_PMP 2/22 437 456 .. 1 19 [] 9.5 0.27
PuR_N 1/1 445 456 .. 59 70 .] 2.2 9.6
DUF239 1/1 460 471 .. 1 12 [. 1.8 3.8
Chlam_PMP 3/22 471 490 .. 1 19 [] 9.0 0.36
Chlam_PMP 4/22 500 517 .. 1 19 [] 12.6 0.039
Chlam_PMP 5/22 524 543 .. 1 19 [] 6.5 1.8
DUF1180 1/1 524 534 .. 181 192 .] 0.7 6.3
FTP 1/1 535 560 .. 23 51 .] 2.2 9.6
Chlam_PMP 6/22 551 569 .. 1 19 [] 11.5 0.076
Chlam_PMP 7/22 576 604 .. 1 19 [] 15.6 0.0061
Chlam_PMP 8/22 616 644 .. 1 19 [] 6.4 1.9
TSGP1 1/1 636 655 .. 1 21 [. 2.4 3.2
Chlam_PMP 9/22 646 663 .. 1 19 [] 12.5 0.043
Fil_haemagg 2/2 655 719 .. 1 75 [] 2.5 5.6
PilN 1/1 662 684 .. 154 176 .] 0.6 7.8
FlaE 1/1 669 686 .. 85 102 .] 2.1 4.2
EMP70 1/1 690 705 .. 414 429 .. -1.7 9.7
SecG 1/1 690 706 .. 62 78 .] 3.1 5.5
Hep_Hag 1/1 692 706 .. 14 28 .] 4.6 4.3
DUF1200 1/1 714 725 .. 46 59 .. 2.0 8.9
A2M_comp 1/1 763 769 .. 278 284 .] -0.5 9.5
Chlorovi_GP_rpt 2/3 790 796 .. 1 7 [. 0.0 45
AbfB 1/1 801 812 .. 1 13 [. 0.5 9.1
DUF547 1/1 810 827 .. 136 153 .] 6.4 0.29
DUF1597 1/1 857 861 .. 123 127 .] 0.6 8
Spore_III_AE 1/1 905 914 .. 319 328 .] 1.0 6.2
Toluene_X 1/1 910 949 .. 1 41 [. -1.0 9.7
Chlam_PMP 10/22 926 946 .. 1 19 [] 7.5 0.93
Chlam_PMP 11/22 958 976 .. 1 19 [] 4.7 5.3
UPF0164 1/1 973 1001 .. 313 345 .] 0.6 4.3
Chlam_PMP 12/22 978 995 .. 1 19 [] 14.0 0.016
Chlam_PMP 13/22 1002 1020 .. 1 19 [] 12.7 0.035
Glug 1/1 1009 1038 .. 1 38 [] 4.6 1.6
Chlam_PMP 14/22 1028 1045 .. 1 19 [] 11.0 0.11
Chlam_PMP 15/22 1052 1066 .. 1 15 [. 5.8 2.8
ACP53EA 1/1 1072 1083 .. 45 56 .. 0.2 6.7
DUF678 1/1 1097 1110 .. 72 85 .] 1.2 8.3
SGL 1/1 1169 1206 .. 49 95 .. 3.8 0.8
DUF2431 1/1 1182 1191 .. 1 10 [. -0.6 9.4
Cu_amine_oxidN2 1/1 1212 1225 .. 78 91 .] 2.2 7.1
Flagellin_C 1/1 1374 1392 .. 31 49 .. 3.7 3.4
Recep_L_domain 1/1 1397 1411 .. 1 15 [. 0.9 8.3
Chlam_PMP 16/22 1404 1428 .. 1 19 [] 8.4 0.53
Chlam_PMP 17/22 1506 1524 .. 1 19 [] 11.6 0.072
Chlam_PMP 18/22 1558 1577 .. 1 17 [. 11.9 0.06
Chlorovi_GP_rpt 3/3 1560 1569 .. 1 10 [. 3.3 4.4
TniQ 1/1 1583 1592 .. 396 405 .] -1.5 9.6
Chlam_PMP 19/22 1596 1613 .. 1 17 [. 11.8 0.062
Allantoicase 1/1 1627 1639 .. 78 90 .. 0.1 9.9
Chlam_PMP 20/22 1635 1650 .. 4 19 .] 8.3 0.59
DUF2341 1/1 1643 1655 .. 1 12 [. 2.4 2.8
Chlam_PMP 21/22 1710 1726 .. 3 19 .] 8.3 0.56
Chlam_PMP 22/22 1738 1756 .. 1 19 [] 2.9 17
Aa_trans 1/1 1776 1792 .. 1 17 [. 1.3 4.4
CdhD 1/1 1790 1807 .. 1 22 [. -0.3 9.3
CLP_protease 1/1 1804 1817 .. 1 13 [. 2.5 2.4
S1-P1_nuclease 1/1 1832 1839 .. 305 312 .] -1.4 9.5
OmpA_membrane 1/1 1854 1878 .. 1 25 [. 10.4 0.021
DUF1495 1/1 1911 1924 .. 63 76 .. 1.4 6.5
Cerato-platanin 1/1 1912 1929 .. 76 93 .. 2.5 3.4
TT_ORF2a 1/1 1929 1955 .. 1 27 [. 0.9 9
A2M_N_2 1/1 1977 2035 .. 1 58 [. 5.1 0.81
DUF1869 1/1 2040 2046 .. 54 60 .] -0.7 7.9
YbbR 1/1 2079 2114 .. 47 93 .] 3.4 2.5
PAAR_motif 1/1 2128 2139 .. 1 12 [. 4.9 2.6
FBA 1/1 2144 2164 .. 143 164 .. 1.6 3.3
DUF728 1/1 2233 2244 .. 129 140 .] 0.1 9.8
DUF1265 1/1 2351 2365 .. 10 24 .. 1.6 8
PD-C2-AF1 1/1 2386 2397 .. 247 258 .] -0.7 8
DegV 1/1 2397 2409 .. 208 220 .] 1.0 6.9
DUF1281 2/2 2450 2460 .. 105 115 .. 0.8 9.5
5_3_exonuc 1/1 2480 2498 .. 63 81 .. 2.2 5
FliX 1/1 2486 2497 .. 137 150 .] 1.4 2.9
Alignments of top-scoring domains:
DUF1281: domain 1 of 2, from 73 to 92: score 0.3, E = 13
*->LeITGqpvqvD.elqrWvsGe<-*
I+G+p+ +D el ++++Ge
gi|1503846 73 -NIPGEPAGIDaELDKLINGE 92
ABC_ATPase: domain 1 of 1, from 167 to 184: score 1.5, E = 3.3
*->medLekkLkslDgrgYkA<-*
me+ +++++Dg +Y A
gi|1503846 167 MEQINDYFNRHDGVKYEA 184
Tweety: domain 1 of 1, from 167 to 188: score -0.0, E = 6.7
*->lhptNsvFapewdeeYlQaLllv<-*
++ +N+ F+ d+ +aL ++
gi|1503846 167 MEQINDYFNRH-DGVKYEALHIL 188
Rsd_AlgQ: domain 1 of 1, from 242 to 259: score 0.8, E = 6.2
*->LIelvldAHsqsGAEGaaVpv<-*
LI l++dA sGA+ aa
gi|1503846 242 LIGLIADA---SGADVAASDD 259
MucBP: domain 1 of 1, from 248 to 301: score 5.1, E = 1.2
*->DedGnelapdvvQtvtFtRtiyRgtvDkvTGkvtikytgdWtagdtY
D+ G +a++ D TG ++ gdW +
gi|1503846 248 DASGADVAAS----------------DDATG--VS---GDWELEYRF 273
aavtsptI..kGY....adktkvag.it<-*
++v++ +I +GY ++ +++ +v+++ +
gi|1503846 274 GTVEAESIavDGYmhnlTNYLVVNEnSS 301
PSGP: domain 1 of 1, from 253 to 265: score 5.9, E = 1.3
*->DdAtsEAAtGPsg<-*
D A s+ AtG sg
gi|1503846 253 DVAASDDATGVSG 265
MAP: domain 1 of 1, from 280 to 300: score 3.6, E = 2.7
CS EEEEEEETTEESSCCEEEEEETT-
*->VPYTIaVNGtstlilSeLkFsnds<-*
+IaV+G + + ++L+ +++s
gi|1503846 280 ---SIAVDGYMHNLTNYLVVNENS 300
Fil_haemagg: domain 1 of 2, from 332 to 400: score 6.6, E = 0.35
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EE ESSE...
*->vaaGaltlnaaalggldlnnggtlsagggltltaaglln.nggtlia
++Galt++ + + +g ls +g +t +++ ++ ++++
gi|1503846 332 RLSGALTIDDS------VTISGYLSGDGENIVTITAAASrRIFSIDS 372
CS ................EEEEESS-EEEEE
ggdlllaagalrnggdltltaaGdLdnsg<-*
g++++l++ + ++g ++ +++G++ nsg
gi|1503846 373 GANVVLENLNFEGNG-TVNSNGGAIYNSG 400
Chlorovi_GP_rpt: domain 1 of 3, from 348 to 361: score 1.9, E = 12
*->yFiGNGsfLtGvta<-*
y++G+G ++ +ta
gi|1503846 348 YLSGDGENIVTITA 361
Chlam_PMP: domain 1 of 22, from 380 to 399: score 12.3, E = 0.047
*->ditFsgNsa.aggGGAiyas<-*
++ F+gN++ +++GGAiy+s
gi|1503846 380 NLNFEGNGTvNSNGGAIYNS 399
Attacin_N: domain 1 of 1, from 383 to 395: score 2.3, E = 8.5
*->qhGsvtvNsdGgs<-*
++G tvNs+Gg+
gi|1503846 383 FEGNGTVNSNGGA 395
Chlam_PMP: domain 2 of 22, from 437 to 456: score 9.5, E = 0.27
*->ditFsgNsa.aggGGAiyas<-*
d++F +Ns++++gGG++y++
gi|1503846 437 DSVFHDNSTsGAGGGVLYNT 456
PuR_N: domain 1 of 1, from 445 to 456: score 2.2, E = 9.6
CS E-STT-EEEEEE
*->ipGAAGGVkYiP<-*
++GA+GGV Y
gi|1503846 445 TSGAGGGVLYNT 456
DUF239: domain 1 of 1, from 460 to 471: score 1.8, E = 3.8
*->yyGaeAtINvwk<-*
+yG AtIN+ +
gi|1503846 460 WYGGYATINITD 471
Chlam_PMP: domain 3 of 22, from 471 to 490: score 9.0, E = 0.36
*->ditFsgNsa.aggGGAiyas<-*
d+ F +N+a++ GGAiy +
gi|1503846 471 DSLFFDNHAsGHAGGAIYLN 490
Chlam_PMP: domain 4 of 22, from 500 to 517: score 12.6, E = 0.039
*->ditFsgNsaaggGGAiyas<-*
+++F +Nsa gGGAi +
gi|1503846 500 GCIFRENSA-DGGGAIANY 517
Chlam_PMP: domain 5 of 22, from 524 to 543: score 6.5, E = 1.8
*->ditFsgNsa.aggGGAiyas<-*
d+ F++N+a+++ G+ i++s
gi|1503846 524 DTLFESNHAdSYAGALISGS 543
DUF1180: domain 1 of 1, from 524 to 534: score 0.7, E = 6.3
*->DNTLFDANqpRr<-*
D TLF +N+ +
gi|1503846 524 D-TLFESNHADS 534
FTP: domain 1 of 1, from 535 to 560: score 2.2, E = 9.6
*->ynGipVlGgeliVhvskdGkvksvsGdfs<-*
y+G + G++++V++s+ v+++ +++
gi|1503846 535 YAGALISGSSATVTASG---VRFAGNSAT 560
Chlam_PMP: domain 6 of 22, from 551 to 569: score 11.5, E = 0.076
*->ditFsgNsaaggGGAiyas<-*
++ F gNsa+g+GGA+ +
gi|1503846 551 GVRFAGNSATGDGGAVMNY 569
Chlam_PMP: domain 7 of 22, from 576 to 604: score 15.6, E = 0.0061
*->ditFsgNsa..........aggGGAiyas<-*
++F+gN+a +++++ + + gGGAi+++
gi|1503846 576 QCVFEGNIAyegssglfdaTCGGGAIFNQ 604
Chlam_PMP: domain 8 of 22, from 616 to 644: score 6.4, E = 1.9
*->ditFsgNsa..........aggGGAiyas<-*
d+ F +N+++++++ ++ ++ GGA++
gi|1503846 616 DCLFADNRVdggshaggaiNNYGGATLVV 644
TSGP1: domain 1 of 1, from 636 to 655: score 2.4, E = 3.2
*->mgltGitLvLvslAFFGsAAA<-*
++ G tLv+v F G AA
gi|1503846 636 -NYGGATLVVVNTTFHGNGAA 655
Chlam_PMP: domain 9 of 22, from 646 to 663: score 12.5, E = 0.043
*->ditFsgNsaaggGGAiyas<-*
++tF gN+a ++GGA+y+
gi|1503846 646 NTTFHGNGA-ASGGAVYND 663
Fil_haemagg: domain 2 of 2, from 655 to 719: score 2.5, E = 5.6
CS EEESSEEEETT TT--EE-SEEEEEE-STT-EEEE-S-EEESSE.
*->vaaGaltlnaa...alggldlnnggtlsagggltltaagllnnggtl
+++Ga+ ++a+++ ++++++ + + +++ +g++ +++ n +
gi|1503846 655 ASGGAVYNDAKskfYAANSTFAFNEAVQGDGAIRSLGTAFVLNSIAV 701
CS ..................EEEEESS-EEEEE
iaggdlllaagalrnggdltltaaGdLdnsg<-*
+g++ + +t++G+L+ +
gi|1503846 702 GNGSG-------------ADITNSGKLEIRY 719
PilN: domain 1 of 1, from 662 to 684: score 0.6, E = 7.8
*->nLeaSklltapelssvlakaqgk<-*
n+++Sk++ a+++ ++ +++qg
gi|1503846 662 NDAKSKFYAANSTFAFNEAVQGD 684
FlaE: domain 1 of 1, from 669 to 686: score 2.1, E = 4.2
*->fag.stfstvsavsaQ.DGy<-*
+a++stf+ +++ Q+DG+
gi|1503846 669 YAAnSTFA-FNEAV-QgDGA 686
EMP70: domain 1 of 1, from 690 to 705: score -1.7, E = 9.7
*->FliffvLNfvlWgkgS<-*
++++fvLN+++ g+gS
gi|1503846 690 LGTAFVLNSIAVGNGS 705
SecG: domain 1 of 1, from 690 to 706: score 3.1, E = 5.5
*->LavlFfilslvLallns<-*
L+++F ++s+++++ +
gi|1503846 690 LGTAFVLNSIAVGNGSG 706
Hep_Hag: domain 1 of 1, from 692 to 706: score 4.6, E = 4.3
CS EE-STTEEEESTTTE
*->kAsgensvAlGgnal<-*
+A+ ns+A+G++++
gi|1503846 692 TAFVLNSIAVGNGSG 706
DUF1200: domain 1 of 1, from 714 to 725: score 2.0, E = 8.9
*->RLeIrYktGkygtI<-*
+LeIrY ++yg+I
gi|1503846 714 KLEIRY--SAYGSI 725
A2M_comp: domain 1 of 1, from 763 to 769: score -0.5, E = 9.5
*->ALseYaa<-*
ALseYaa
gi|1503846 763 ALSEYAA 769
Chlorovi_GP_rpt: domain 2 of 3, from 790 to 796: score 0.0, E = 45
*->yFiGNGs<-*
+F+G+G+
gi|1503846 790 FFYGDGT 796
AbfB: domain 1 of 1, from 801 to 812: score 0.5, E = 9.1
CS EE.EEE-STT-TT
*->vsPlrvtSvnYpd<-*
v+ +rv++ +Y +
gi|1503846 801 VT-VRVSTPGYST 812
DUF547: domain 1 of 1, from 810 to 827: score 6.4, E = 0.29
*->YtaenieeqLdeAareFi<-*
Y+ + +e+qLd +r ++
gi|1503846 810 YSTATTERQLDHDQRGYL 827
DUF1597: domain 1 of 1, from 857 to 861: score 0.6, E = 8
*->HFYTi<-*
HFYT+
gi|1503846 857 HFYTV 861
Spore_III_AE: domain 1 of 1, from 905 to 914: score 1.0, E = 6.2
*->tIivgaGNit<-*
tI+v+aGN++
gi|1503846 905 TILVSAGNGI 914
Toluene_X: domain 1 of 1, from 910 to 949: score -1.0, E = 9.7
CS XXXXXXXXXXXX-TTC---S-CCHHHTTT-STTT-.-SSCC
*->lllasgqalAagfqlneqSagGlGRAmgGeaaaadidaasv<-*
+ +++ q +A+ + + + +G GR+m+G++ a +++++
gi|1503846 910 AGNGIFQIQAGDVTISDLAMTGNGRSMSGDGGAVV-NRGTL 949
Chlam_PMP: domain 10 of 22, from 926 to 946: score 7.5, E = 0.93
*->ditFsgNsa..aggGGAiyas<-*
d+ ++gN+ + +g+GGA++++
gi|1503846 926 DLAMTGNGRsmSGDGGAVVNR 946
Chlam_PMP: domain 11 of 22, from 958 to 976: score 4.7, E = 5.3
*->ditFsgNsaaggGGAiyas<-*
++t +gN++a++++++++
gi|1503846 958 GLTVTGNGGAVWNAGVLTA 976
UPF0164: domain 1 of 1, from 973 to 1001: score 0.6, E = 4.3
*->vaFsssvategnasqlvrasaGaEiqilsvrld<-*
v+ ++v gna as+Ga + +s ++d
gi|1503846 973 VLTAVNVLFAGNAA----ASGGAVFNRGSLSID 1001
Chlam_PMP: domain 12 of 22, from 978 to 995: score 14.0, E = 0.016
*->ditFsgNsaaggGGAiyas<-*
++ F gN+a ++GGA++++
gi|1503846 978 NVLFAGNAA-ASGGAVFNR 995
Chlam_PMP: domain 13 of 22, from 1002 to 1020: score 12.7, E = 0.035
*->ditFsgNsaaggGGAiyas<-*
+F+gN+a+g+GGAi +
gi|1503846 1002 KGIFTGNKASGSGGAIANA 1020
Glug: domain 1 of 1, from 1009 to 1038: score 4.6, E = 1.6
*->gnsavGGLvGgaegggrGeqenpgsienctatgnvtvt<-*
+s+ GG +++a+g+ +i+n+++++n++v
gi|1503846 1009 KASGSGGAIANAAGT--------VRIDNSYFSANAAVD 1038
Chlam_PMP: domain 14 of 22, from 1028 to 1045: score 11.0, E = 0.11
*->ditFsgNsaaggGGAiyas<-*
+++Fs N+a ++GGA+++
gi|1503846 1028 NSYFSANAA-VDGGAVWNA 1045
Chlam_PMP: domain 15 of 22, from 1052 to 1066: score 5.8, E = 2.8
*->ditFsgNsaaggGGA<-*
++tF+gN+aag+G A
gi|1503846 1052 NSTFDGNTAAGKGSA 1066
ACP53EA: domain 1 of 1, from 1072 to 1083: score 0.2, E = 6.7
*->AlasLientIPA<-*
+++sL++ntI+A
gi|1503846 1072 GVSSLVNNTITA 1083
DUF678: domain 1 of 1, from 1097 to 1110: score 1.2, E = 8.3
*->aACGSsLrpLrDlv<-*
aA GS L L+ l+
gi|1503846 1097 AASGSKLLALNNLA 1110
SGL: domain 1 of 1, from 1169 to 1206: score 3.8, E = 0.8
*->nepvGaialIrvddrggrlivalkdGiallrwdpdtsiGeveltpla
++++Ga+a ++ liv++kdG +++++ dt G +++a
gi|1503846 1169 RVLPGAFAS---QE--RNLIVGEKDGSFYFTTGRDT--G--QMQWIA 1206
<-*
gi|1503846 - -
DUF2431: domain 1 of 1, from 1182 to 1191: score -0.6, E = 9.4
*->LLVGEGDFSF<-*
L+VGE D SF
gi|1503846 1182 LIVGEKDGSF 1191
Cu_amine_oxidN2: domain 1 of 1, from 1212 to 1225: score 2.2, E = 7.1
CS EETTTTEEEEEEEE
*->VDLttGkvvswril<-*
+DL tG+v +++++
gi|1503846 1212 TDLVTGSVAEAEAM 1225
Flagellin_C: domain 1 of 1, from 1374 to 1392: score 3.7, E = 3.4
*->RlestinNlnntveNlsAA<-*
++ ti+N++ t eN+sAA
gi|1503846 1374 QVVVTIENVAMTRENVSAA 1392
Recep_L_domain: domain 1 of 1, from 1397 to 1411: score 0.9, E = 8.3
CS T-SEEESBEEEESHH
*->nCtvIeGnLeItlrs<-*
+C +eGn+++tl +
gi|1503846 1397 GCIYVEGNVVLTLNE 1411
Chlam_PMP: domain 16 of 22, from 1404 to 1428: score 8.4, E = 0.53
*->ditFsgNsa......aggGGAiyas<-*
+++++ N+ + +++a++GGA+y+s
gi|1503846 1404 NVVLTLNECefygssASFGGAVYGS 1428
Chlam_PMP: domain 17 of 22, from 1506 to 1524: score 11.6, E = 0.072
*->ditFsgNsaaggGGAiyas<-*
+++F+gNsa + GGAi
gi|1503846 1506 GSVFDGNSAEKAGGAIAVA 1524
Chlam_PMP: domain 18 of 22, from 1558 to 1577: score 11.9, E = 0.06
*->ditFsgNsa...aggGGAiy<-*
d++FsgN+a+ +a+gGGAi+
gi|1503846 1558 DSVFSGNAAtltASGGGAIF 1577
Chlorovi_GP_rpt: domain 3 of 3, from 1560 to 1569: score 3.3, E = 4.4
*->yFiGNGsfLt<-*
+F+GN+++Lt
gi|1503846 1560 VFSGNAATLT 1569
TniQ: domain 1 of 1, from 1583 to 1592: score -1.5, E = 9.6
*->RlnDGLsDsF<-*
R+nDG +F
gi|1503846 1583 RQNDGAGKNF 1592
Chlam_PMP: domain 19 of 22, from 1596 to 1613: score 11.8, E = 0.062
*->ditFsgNsa.aggGGAiy<-*
d+tFsgN+a+++gGGA++
gi|1503846 1596 DSTFSGNTAgTYGGGAVF 1613
Allantoicase: domain 1 of 1, from 1627 to 1639: score 0.1, E = 9.9
CS EEEEE-TT-SSSB
*->gieIDTahFkGNy<-*
++eID ++F GN+
gi|1503846 1627 DVEIDGNFFSGNS 1639
Chlam_PMP: domain 20 of 22, from 1635 to 1650: score 8.3, E = 0.59
*->FsgNsaaggGGAiyas<-*
FsgNs+ag+GGAi +
gi|1503846 1635 FSGNSTAGDGGAIRLT 1650
DUF2341: domain 1 of 1, from 1643 to 1655: score 2.4, E = 2.8
*->DfgDIRFtD.sdG<-*
D+g IR t++s+G
gi|1503846 1643 DGGAIRLTEdSNG 1655
Chlam_PMP: domain 21 of 22, from 1710 to 1726: score 8.3, E = 0.56
*->tFsgNsaaggGGAiyas<-*
tFs+Nsa++ GGA+++s
gi|1503846 1710 TFSENSALRAGGAFSSS 1726
Chlam_PMP: domain 22 of 22, from 1738 to 1756: score 2.9, E = 17
*->ditFsgNsaaggGGAiyas<-*
++t+ N+a+ +GGAi ++
gi|1503846 1738 NSTLAFNAAGTNGGAIDTR 1756
Aa_trans: domain 1 of 1, from 1776 to 1792: score 1.3, E = 4.4
*->rtisalqavfnlikaiv<-*
++isa +v n+i++iv
gi|1503846 1776 GGISADAVVVNVINSIV 1792
CdhD: domain 1 of 1, from 1790 to 1807: score -0.3, E = 9.3
*->EVvlGatkadGggekaVkiGGe<-*
+vlG+ Ggge aV GGe
gi|1503846 1790 SIVLGN----GGGEFAVANGGE 1807
CLP_protease: domain 1 of 1, from 1804 to 1817: score 2.5, E = 2.4
CS -SSS .-CHHHHHH
*->sgge.arayDiYsR<-*
+gge ++ay iY+R
gi|1503846 1804 NGGEiHTAYSIYGR 1817
S1-P1_nuclease: domain 1 of 1, from 1832 to 1839: score -1.4, E = 9.5
CS HHHHHH-X
*->aiLNrifs<-*
a+LN++f+
gi|1503846 1832 AVLNEVFG 1839
OmpA_membrane: domain 1 of 1, from 1854 to 1878: score 10.4, E = 0.021
CS XXXXXXXXXXXXXXXX---TTEEEE
*->iallVAlasAAsvAqAApaantfYv<-*
a+++A+++++s++q A ++fY+
gi|1503846 1854 LAISAAGLAFTSGTQVAKVGDDFYF 1878
DUF1495: domain 1 of 1, from 1911 to 1924: score 1.4, E = 6.5
*->GLVevEkgknGlKi<-*
G V+vE +++G+++
gi|1503846 1911 GIVRVETSRGGFNV 1924
Cerato-platanin: domain 1 of 1, from 1912 to 1929: score 2.5, E = 3.4
*->vlAiDsaggGFNiaktAM<-*
++ + ++gGFN++ AM
gi|1503846 1912 IVRVETSRGGFNVGAHAM 1929
TT_ORF2a: domain 1 of 1, from 1929 to 1955: score 0.9, E = 9
*->mAEFstPvRseeAtEGiqrvPRAGAeG<-*
m E s+ v e +G P G +G
gi|1503846 1929 MVEISVEVSTEKSYDGTTAAPVDGNGG 1955
A2M_N_2: domain 1 of 1, from 1977 to 2035: score 5.1, E = 0.81
*->Lkl.sldkkeykvGetakvtvt.g.spfpagkfaylvve.rGkilas
++l++l+ + +G ++ ++v++ f +g ++ ++ +++G i+++
gi|1503846 1977 VELeQLEYTDKNAGRDIPLNVKgVlGGFEDGSLYIVTFSgKGDIHKA 2023
gwvevpeggstvttl<-*
+ ++v+ +++t+ +
gi|1503846 2024 Q-LTVTGNTDTQ--I 2035
DUF1869: domain 1 of 1, from 2040 to 2046: score -0.7, E = 7.9
*->EtdVCGW<-*
E+ V GW
gi|1503846 2040 EHAVVGW 2046
YbbR: domain 1 of 1, from 2079 to 2114: score 3.4, E = 2.5
*->katvpiDlsglkeGehsvsvtvsllapdgnvevevnvtiPstvtVti
+a+v +D +g ++s++ + dg+ +++ P++v Vt+
gi|1503846 2079 DAVV-VDADGN-----DMSGNYEISYIDGKLTIN-----PAKVIVTV 2114
<-*
gi|1503846 - -
PAAR_motif: domain 1 of 1, from 2128 to 2139: score 4.9, E = 2.6
*->iieGspnvkvnG<-*
+++G+++v+vn+
gi|1503846 2128 VASGNHTVTVNS 2139
FBA: domain 1 of 1, from 2144 to 2164: score 1.6, E = 3.3
*->LLsAdGetVLaeFsapPveilq<-*
LL+Ad +VL +F+++ + q
gi|1503846 2144 LLDAD-DFVLESFEYGGKNVGQ 2164
DUF728: domain 1 of 1, from 2233 to 2244: score 0.1, E = 9.8
*->DDvdFGldqLFa<-*
DDvdF +d L a
gi|1503846 2233 DDVDFDMDSLQA 2244
DUF1265: domain 1 of 1, from 2351 to 2365: score 1.6, E = 8
*->lmYVknLLivAedak<-*
l+YV+nLL ++e+ +
gi|1503846 2351 LHYVENLLHITENPR 2365
PD-C2-AF1: domain 1 of 1, from 2386 to 2397: score -0.7, E = 8
*->YvLnHaLsvEGl<-*
Y Ln ++s E l
gi|1503846 2386 YNLNYTMSTEAL 2397
DegV: domain 1 of 1, from 2397 to 2409: score 1.0, E = 6.9
CS H-TT-EEEEEEEE
*->tGpGalgvaiipk<-*
+GpG+ g+ ++p+
gi|1503846 2397 LGPGSAGFYWEPR 2409
DUF1281: domain 2 of 2, from 2450 to 2460: score 0.8, E = 9.5
*->iaerKWEtlPd<-*
i+ ++WEt+++
gi|1503846 2450 IGGVRWETILN 2460
5_3_exonuc: domain 1 of 1, from 2480 to 2498: score 2.2, E = 5
*->klnekLlagkedAflSkkL<-*
+++e+ +a+ e+A++S+ L
gi|1503846 2480 AFYENARAEAEMAKFSRAL 2498
FliX: domain 1 of 1, from 2486 to 2497: score 1.4, E = 2.9
*->RAeVELAKlgqarg<-*
RAe E AK+++ +
gi|1503846 2486 RAEAEMAKFSR--A 2497
//