hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 153817921.fa
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Query sequence: gi|153817921|ref|ZP_01970588.1|
Accession: [none]
Description: RTX toxin RtxA [Vibrio cholerae NCTC 8457]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RtxA RtxA repeat 756.6 8.7e-225 48
HemolysinCabind Hemolysin-type calcium-binding repeat 30.8 3.7e-08 7
Abhydrolase_1 alpha/beta hydrolase fold 21.4 1e-05 1
M M protein repeat 15.7 0.0064 3
Glyco_hydro_16 Glycosyl hydrolases family 16 9.1 0.028 2
SOR Sulphur oxygenase reductase 8.1 0.036 1
Adeno_shaft Adenoviral fibre protein (repeat/shaf 10.8 0.081 3
DUF2190 Uncharacterized conserved protein (DU 7.5 0.12 1
Hydrolase haloacid dehalogenase-like hydrolase 5.2 0.47 3
Abhydrolase_3 alpha/beta hydrolase fold 5.0 0.5 1
Flp_Fap Flp/Fap pilin component 7.6 0.5 1
TraH_2 TraH_2 2.8 0.54 1
Spore_III_AE Stage III sporulation protein AE (spo 4.8 0.56 1
CBM_4_9 Carbohydrate binding domain 4.9 0.63 1
LTV Low temperature viability protein 3.4 0.66 1
DUF2019 Domain of unknown function (DUF2019) 4.6 0.68 1
53-BP1_Tudor Tumour suppressor p53-binding protein 3.3 0.76 1
DUF2159 Predicted secreted (periplasmic) prot 4.4 1 1
TPD52 Tumour protein D52 family 3.7 1 1
EsxB Virulence factor EsxB 4.0 1.1 1
Autotransporter Autotransporter beta-domain 3.9 1.1 2
DNA_mis_repair DNA mismatch repair protein, C-termin 4.3 1.1 1
DegV Uncharacterised protein, DegV family 3.6 1.2 1
PGAP1 PGAP1-like protein 3.4 1.2 1
Peptidase_M6 Immune inhibitor A peptidase M6 1.1 1.3 1
DUF1940 Domain of unknown function (DUF1940) 1.6 1.4 1
DUF411 Protein of unknown function, DUF 1.0 1.4 1
L27_1 L27_1 3.0 1.4 1
Abhydrolase_2 Phospholipase/Carboxylesterase 3.5 1.6 2
CBM49 Carbohydrate binding domain CBM49 4.1 1.6 1
Terminase_1 Phage Terminase 1.1 1.6 1
PKD PKD domain 3.4 1.7 1
Gp_dh_N Glyceraldehyde 3-phosphate dehydrogen 0.4 1.8 1
DUF1732 Domain of unknown function (DUF1732) 3.8 1.9 1
XLF XLF (XRCC4-like factor) 3.0 2.1 1
OmpA OmpA family 3.9 2.4 1
PilN Fimbrial assembly protein (PilN) 2.3 2.4 1
Thioesterase Thioesterase domain 2.4 2.4 1
DUF2134 Predicted membrane protein (DUF2134) 3.0 2.6 1
BAT2_N BAT2 N-terminus 1.9 2.7 1
DUF918 Nucleopolyhedrovirus protein of unkno 3.1 2.7 1
zf-CHC2 CHC2 zinc finger 3.6 2.7 1
Ada3 Histone acetyltransferases subunit 3 2.5 2.9 1
DUF1814 Domain of unknown function (DUF1814) 1.6 2.9 1
Vif Retroviral Vif (Viral infectivity) pr 2.2 2.9 1
HisKA_2 Histidine kinase 2.9 3.1 1
DUF936 Plant protein of unknown function (DU -0.1 3.1 1
Sec_GG SecD/SecF GG Motif 3.8 3.2 1
Peptidase_C9 Peptidase family C9 0.4 3.3 1
DUF556 Protein of unknown function (DUF556) 1.4 3.4 1
CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISP 1.1 3.4 1
DUF1417 Protein of unknown function (DUF1417) 3.1 3.5 1
TM_helix Conserved TM helix 3.6 3.7 1
PalH PalH/RIM21 0.7 3.8 1
IgG_binding_B B domain 3.0 4 1
Bombolitin Bombolitin family 3.7 4 1
FTP Fungalysin/Thermolysin Propeptide Mot 3.5 4.1 1
DUF1623 Protein of unknown function (DUF1623) 2.2 4.3 1
Leuk-A4-hydro_C Leukotriene A4 hydrolase, C-terminal 1.5 4.5 1
Big_2 Bacterial Ig-like domain (group 2) 2.6 4.5 2
TIM21 TIM21 2.0 4.5 1
VWA_CoxE VWA domain containing CoxE-like prote 1.7 4.6 1
SCO1-SenC SCO1/SenC 1.5 4.7 1
Homo_sperm_syn Homospermidine synthase -0.7 4.7 1
Fil_haemagg Haemagluttinin repeat 2.6 5.1 1
Tir_receptor_C Translocated intimin receptor (Tir) C 0.7 5.2 1
DUF2286 Uncharacterized protein conserved in 2.2 5.7 1
SURF4 SURF4 family 0.5 5.7 1
Hep_Hag Hep_Hag 4.1 6 2
Alpha_adaptin_C Alpha adaptin AP2, C-terminal domain 2.2 6 1
Alpha_kinase Alpha-kinase family -0.1 6.1 1
Phage-tail_2 Baseplate structural protein, domain 1.9 6.3 1
ANF_receptor Receptor family ligand binding region 0.1 6.4 1
DUF679 Protein of unknown function (DUF679) 0.7 6.6 1
Strep_SA_rep Streptococcal surface antigen repeat 3.2 6.7 1
Cast RIM-binding protein of the cytomatrix -2.1 6.8 1
Cas_TM1812 CRISPR-associated protein (cas_TM1812 0.6 6.8 1
ubiquitin Ubiquitin family 2.4 6.8 1
Sigma54_DBD Sigma-54, DNA binding domain 1.5 7.4 1
DIRP DIRP 2.1 7.5 1
RPAP1_C RPAP1-like, C-terminal 1.9 7.5 1
DUF842 Eukaryotic protein of unknown functio 1.4 7.8 1
zf-dskA_traR Prokaryotic dksA/traR C4-type zinc fi 1.5 7.9 1
Chlor_dismutase Chlorite dismutase 1.0 7.9 1
DUF523 Protein of unknown function (DUF523) 1.0 8.1 1
Saf-Nte_pilin Saf-pilin pilus formation protein 0.9 8.2 1
SecA_PP_bind SecA preprotein cross-linking domain 1.3 8.5 1
Enhancin Viral enhancin protein -0.4 8.6 1
Vinculin Vinculin family -1.4 8.6 1
DUF469 Protein with unknown function (DUF469 -0.5 8.8 1
DUF1786 Putative pyruvate format-lyase activa -1.0 8.8 1
H-kinase_dim Signal transducing histidine kinase, 2.1 8.9 1
Spc24 Spc24 subunit of Ndc80 1.7 9 1
CDC37_C Cdc37 C terminal domain 1.5 9 1
YiaAB yiaA/B two helix domain 1.9 9 1
Arch_fla_DE Archaeal flagella protein 0.6 9.1 1
CHASE3 CHASE3 domain 1.6 9.1 1
GET2 GET complex subunit GET2 -0.8 9.2 1
Phge_rel_HI1409 Phage-related protein (Phge_rel_HI140 1.2 9.3 1
Herpes_MCP Herpes virus major capsid protein -2.6 9.4 1
DUF1655 Protein of unknown function (DUF1655) 1.8 9.4 1
Fimbrial Fimbrial protein 0.5 9.6 1
Tat Transactivating regulatory protein (T 2.0 9.7 1
DUF1970 Domain of unknown function (DUF1970) -0.6 9.8 1
DUF627 Protein of unknown function (DUF627) 1.2 9.8 1
Ins_P5_2-kin Inositol-pentakisphosphate 2-kinase -1.3 9.8 1
DUF642 Protein of unknown function, DUF642 -1.3 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Homo_sperm_syn 1/1 23 33 .. 1 11 [. -0.7 4.7
HemolysinCabind 1/7 54 66 .. 1 13 [. 4.4 3.6
RtxA 1/48 82 99 .. 1 19 [] 14.8 0.0032
ANF_receptor 1/1 96 119 .. 382 410 .. 0.1 6.4
RtxA 2/48 101 119 .. 1 19 [] 14.0 0.0056
RtxA 3/48 121 139 .. 1 19 [] 18.3 0.00029
RtxA 4/48 141 159 .. 1 19 [] 17.7 0.00044
RtxA 5/48 161 185 .. 1 19 [] 16.2 0.0012
Fil_haemagg 1/1 178 255 .. 1 75 [] 2.6 5.1
RtxA 6/48 187 205 .. 1 19 [] 17.5 0.0005
RtxA 7/48 207 225 .. 1 19 [] 17.1 0.00065
RtxA 8/48 255 273 .. 1 19 [] 15.9 0.0015
RtxA 9/48 275 293 .. 1 19 [] 15.2 0.0025
SOR 1/1 340 360 .. 1 21 [. 8.1 0.036
ubiquitin 1/1 398 419 .. 58 78 .] 2.4 6.8
Peptidase_M6 1/1 481 497 .. 687 703 .] 1.1 1.3
SURF4 1/1 549 566 .. 1 18 [. 0.5 5.7
DUF2190 1/1 567 580 .. 99 112 .] 7.5 0.12
RtxA 10/48 581 599 .. 1 19 [] 15.4 0.0021
Fimbrial 1/1 595 601 .. 1 7 [. 0.5 9.6
RtxA 11/48 601 619 .. 1 19 [] 16.9 0.00075
RtxA 12/48 621 639 .. 1 19 [] 25.1 2.7e-06
RtxA 13/48 641 659 .. 1 19 [] 16.9 0.00079
RtxA 14/48 661 679 .. 1 19 [] 14.0 0.0055
YiaAB 1/1 680 694 .. 39 53 .] 1.9 9
RtxA 15/48 699 717 .. 1 19 [] 6.9 0.75
RtxA 16/48 718 735 .. 1 19 [] 18.5 0.00024
DUF523 1/1 729 761 .. 61 94 .. 1.0 8.1
RtxA 17/48 738 754 .. 2 19 .] 13.9 0.0059
RtxA 18/48 756 774 .. 1 19 [] 16.9 0.00077
RtxA 19/48 779 797 .. 1 19 [] 22.7 1.4e-05
DUF1786 1/1 798 804 .. 1 7 [. -1.0 8.8
RtxA 20/48 798 816 .. 1 19 [] 21.0 4.6e-05
RtxA 21/48 817 834 .. 1 19 [] 16.9 0.00078
Sec_GG 1/1 818 833 .. 19 34 .] 3.8 3.2
Bombolitin 1/1 831 846 .. 1 17 [] 3.7 4
RtxA 22/48 837 854 .. 2 19 .] 14.0 0.0057
RtxA 23/48 855 873 .. 1 19 [] 17.1 0.00068
Spore_III_AE 1/1 870 881 .. 317 328 .] 4.8 0.56
RtxA 24/48 874 892 .. 1 19 [] 17.4 0.00052
RtxA 25/48 893 911 .. 1 19 [] 15.2 0.0024
RPAP1_C 1/1 896 907 .. 69 80 .] 1.9 7.5
DUF1623 1/1 903 920 .. 37 55 .. 2.2 4.3
Herpes_MCP 1/1 910 922 .. 1 13 [. -2.6 9.4
RtxA 26/48 912 930 .. 1 19 [] 16.4 0.0011
Hydrolase 1/3 921 945 .. 160 184 .] 3.7 1.2
RtxA 27/48 931 949 .. 1 19 [] 15.2 0.0025
RtxA 28/48 950 968 .. 1 19 [] 12.0 0.022
RtxA 29/48 969 987 .. 1 19 [] 18.3 0.00029
RtxA 30/48 988 1006 .. 1 19 [] 21.4 3.5e-05
Phge_rel_HI1409 1/1 989 1003 .. 1 15 [. 1.2 9.3
RtxA 31/48 1008 1025 .. 2 19 .] 13.1 0.01
RtxA 32/48 1026 1043 .. 1 19 [] 16.0 0.0015
DegV 1/1 1032 1048 .. 204 220 .] 3.6 1.2
Hydrolase 2/3 1035 1059 .. 160 184 .] 1.3 6.1
RtxA 33/48 1045 1062 .. 1 19 [] 10.1 0.079
RtxA 34/48 1064 1082 .. 1 19 [] 17.1 0.00066
RtxA 35/48 1084 1101 .. 2 19 .] 14.9 0.0031
RtxA 36/48 1107 1121 .. 5 19 .] 7.7 0.43
Big_2 1/2 1120 1142 .. 67 90 .] 1.4 10
RtxA 37/48 1122 1140 .. 1 19 [] 17.9 0.00039
Adeno_shaft 1/3 1127 1139 .. 18 30 .] 4.9 3.6
RtxA 38/48 1141 1159 .. 1 19 [] 11.6 0.029
RtxA 39/48 1160 1178 .. 1 19 [] 20.2 7.9e-05
RtxA 40/48 1181 1197 .. 3 19 .] 11.9 0.023
Glyco_hydro_16 1/2 1191 1216 .. 1 30 [. 4.3 0.74
RtxA 41/48 1198 1216 .. 1 19 [] 21.2 3.9e-05
Ins_P5_2-kin 1/1 1215 1224 .. 1 10 [. -1.3 9.8
RtxA 42/48 1217 1235 .. 1 19 [] 15.9 0.0015
Glyco_hydro_16 2/2 1229 1256 .. 1 34 [. 4.9 0.48
Adeno_shaft 2/3 1239 1272 .. 1 30 [] 3.7 7.6
RtxA 43/48 1239 1254 .. 4 19 .] 7.0 0.7
Autotransporter 1/2 1252 1302 .. 240 296 .] 1.0 6.5
Big_2 2/2 1255 1275 .. 69 90 .] 1.2 11
RtxA 44/48 1255 1273 .. 1 19 [] 15.4 0.0021
RtxA 45/48 1274 1292 .. 1 19 [] 15.2 0.0024
RtxA 46/48 1293 1311 .. 1 19 [] 23.0 1.1e-05
Adeno_shaft 3/3 1298 1310 .. 18 30 .] 2.3 19
Hydrolase 3/3 1312 1345 .. 146 184 .] 0.2 13
RtxA 47/48 1312 1330 .. 1 19 [] 14.8 0.0033
Flp_Fap 1/1 1350 1373 .. 26 50 .] 7.6 0.5
DUF411 1/1 1432 1450 .. 1 20 [. 1.0 1.4
CBM_4_9 1/1 1458 1483 .. 1 30 [. 4.9 0.63
Vif 1/1 1460 1483 .. 68 93 .. 2.2 2.9
Cas_TM1812 1/1 1502 1519 .. 232 249 .] 0.6 6.8
EsxB 1/1 1502 1517 .. 87 102 .] 4.0 1.1
DUF918 1/1 1613 1632 .. 129 151 .. 3.1 2.7
zf-dskA_traR 1/1 1616 1635 .. 1 21 [. 1.5 7.9
M 1/3 1622 1640 .. 1 19 [. 1.1 54
Spc24 1/1 1631 1655 .. 1 25 [. 1.7 9
DUF1814 1/1 1639 1689 .. 263 299 .] 1.6 2.9
Tir_receptor_C 1/1 1660 1668 .. 1 9 [. 0.7 5.2
DUF556 1/1 1662 1679 .. 221 238 .] 1.4 3.4
M 2/3 1673 1693 .. 1 21 [] 9.2 0.38
Alpha_adaptin_C 1/1 1675 1685 .. 104 114 .] 2.2 6
CHASE3 1/1 1707 1739 .. 110 142 .] 1.6 9.1
DUF1970 1/1 1709 1739 .. 87 117 .] -0.6 9.8
M 3/3 1735 1755 .. 1 21 [] 5.5 3.7
DUF627 1/1 1736 1747 .. 109 121 .] 1.2 9.8
DUF1940 1/1 1738 1754 .. 54 70 .. 1.6 1.4
Strep_SA_rep 1/1 1752 1776 .. 1 25 [] 3.2 6.7
BAT2_N 1/1 1761 1776 .. 185 200 .] 1.9 2.7
TPD52 1/1 1858 1891 .. 1 37 [. 3.7 1
Phage-tail_2 1/1 1915 1937 .. 149 173 .] 1.9 6.3
LTV 1/1 2002 2020 .. 1 20 [. 3.4 0.66
CBM49 1/1 2007 2015 .. 83 91 .] 4.1 1.6
SCO1-SenC 1/1 2088 2111 .. 165 188 .] 1.5 4.7
Vinculin 1/1 2147 2164 .. 1002 1019 .] -1.4 8.6
PilN 1/1 2154 2178 .. 152 176 .] 2.3 2.4
DUF679 1/1 2197 2205 .. 1 9 [. 0.7 6.6
zf-CHC2 1/1 2202 2216 .. 84 98 .] 3.6 2.7
H-kinase_dim 1/1 2329 2342 .. 1 14 [. 2.1 8.9
Chlor_dismutase 1/1 2345 2359 .. 1 16 [. 1.0 7.9
DUF469 1/1 2364 2368 .. 101 105 .] -0.5 8.8
CDC37_C 1/1 2402 2429 .. 84 110 .] 1.5 9
DUF842 1/1 2443 2460 .. 1 18 [. 1.4 7.8
TIM21 1/1 2494 2502 .. 149 157 .] 2.0 4.5
DIRP 1/1 2521 2541 .. 87 110 .] 2.1 7.5
IgG_binding_B 1/1 2550 2567 .. 39 56 .] 3.0 4
Peptidase_C9 1/1 2594 2614 .. 189 209 .] 0.4 3.3
VWA_CoxE 1/1 2599 2627 .. 1 33 [. 1.7 4.6
DUF936 1/1 2606 2635 .. 767 796 .] -0.1 3.1
DUF642 1/1 2645 2654 .. 330 339 .] -1.3 9.9
Ada3 1/1 2653 2673 .. 159 179 .] 2.5 2.9
PKD 1/1 2714 2732 .. 72 92 .] 3.4 1.7
SecA_PP_bind 1/1 2755 2759 .. 124 128 .] 1.3 8.5
Arch_fla_DE 1/1 2875 2883 .. 103 111 .] 0.6 9.1
Cast 1/1 2935 2959 .. 712 736 .. -2.1 6.8
DUF1732 1/1 2939 2950 .. 1 12 [. 3.8 1.9
CRISPR_Cse1 1/1 2941 2973 .. 522 557 .] 1.1 3.4
HisKA_2 1/1 2942 2956 .. 17 36 .. 2.9 3.1
DUF2286 1/1 2953 2973 .. 17 37 .. 2.2 5.7
L27_1 1/1 2962 2993 .. 1 35 [. 3.0 1.4
Leuk-A4-hydro_C 1/1 3021 3030 .. 148 157 .] 1.5 4.5
TM_helix 1/1 3023 3040 .. 36 53 .] 3.6 3.7
Abhydrolase_2 1/2 3167 3193 .. 1 27 [. 1.0 7.7
PGAP1 1/1 3177 3194 .. 1 21 [. 3.4 1.2
Abhydrolase_1 1/1 3209 3319 .. 1 103 [. 21.4 1e-05
Abhydrolase_3 1/1 3232 3284 .. 50 128 .. 5.0 0.5
Gp_dh_N 1/1 3238 3254 .. 138 156 .. 0.4 1.8
OmpA 1/1 3240 3265 .. 65 90 .. 3.9 2.4
Abhydrolase_2 2/2 3245 3262 .. 103 132 .. 2.5 3
Thioesterase 1/1 3257 3284 .. 78 108 .. 2.4 2.4
DUF2159 1/1 3370 3388 .. 112 130 .] 4.4 1
FTP 1/1 3486 3506 .. 31 51 .] 3.5 4.1
TraH_2 1/1 3655 3662 .. 202 209 .] 2.8 0.54
53-BP1_Tudor 1/1 3698 3717 .. 14 33 .. 3.3 0.76
Hep_Hag 1/2 3733 3746 .. 1 14 [. 3.4 9.2
Autotransporter 2/2 3740 3787 .. 1 62 [. 2.8 2.1
RtxA 48/48 3740 3757 .. 1 19 [] 4.7 3.3
Saf-Nte_pilin 1/1 3759 3766 .. 139 146 .] 0.9 8.2
Enhancin 1/1 3793 3805 .. 1 13 [. -0.4 8.6
DUF2134 1/1 3898 3938 .. 1 51 [. 3.0 2.6
GET2 1/1 3955 3961 .. 324 330 .] -0.8 9.2
DUF1417 1/1 4013 4028 .. 154 169 .. 3.1 3.5
DNA_mis_repair 1/1 4025 4048 .. 1 29 [. 4.3 1.1
Alpha_kinase 1/1 4062 4075 .. 225 238 .. -0.1 6.1
Sigma54_DBD 1/1 4134 4153 .. 1 20 [. 1.5 7.4
Tat 1/1 4138 4157 .. 1 20 [. 2.0 9.7
XLF 1/1 4146 4176 .. 161 207 .] 3.0 2.1
HemolysinCabind 2/7 4211 4228 .. 1 18 [] 8.6 0.19
PalH 1/1 4215 4226 .. 420 431 .] 0.7 3.8
HemolysinCabind 3/7 4229 4235 .. 1 7 [. 1.8 22
HemolysinCabind 4/7 4247 4254 .. 1 8 [. 4.0 4.9
Hep_Hag 2/2 4294 4317 .. 9 28 .] 0.7 50
DUF1655 1/1 4311 4322 .. 43 55 .] 1.8 9.4
HemolysinCabind 5/7 4334 4345 .. 7 18 .] 3.7 5.8
HemolysinCabind 6/7 4353 4363 .. 8 18 .] 5.9 1.3
HemolysinCabind 7/7 4375 4392 .. 1 18 [] 2.3 16
Terminase_1 1/1 4496 4510 .. 516 530 .] 1.1 1.6
DUF2019 1/1 4507 4523 .. 89 106 .] 4.6 0.68
Alignments of top-scoring domains:
Homo_sperm_syn: domain 1 of 1, from 23 to 33: score -0.7, E = 4.7
*->dgpilmIGfGS<-*
+ i+ IGfG+
gi|1538179 23 NNNIVAIGFGG 33
HemolysinCabind: domain 1 of 7, from 54 to 66: score 4.4, E = 3.6
CS E--SSS-EEEEES
*->yGGaGnDtLyGga<-*
y G GnDt Gg+
gi|1538179 54 YTGSGNDTVVGGS 66
RtxA: domain 1 of 48, from 82 to 99: score 14.8, E = 0.0032
*->GaGgaNvitkvGdggdlaf<-*
Ga+g++ i+k+G +g+++f
gi|1538179 82 GAAGYADINKSG-DGNVSF 99
ANF_receptor: domain 1 of 1, from 96 to 119: score 0.1, E = 6.4
*->nkmvkvnfeGltGdvqfddnggrrpdysl<-*
n v+f G++G v++d g++ d s+
gi|1538179 96 N----VSFAGAAGGVSIDH-LGNHGDVSY 119
RtxA: domain 2 of 48, from 101 to 119: score 14.0, E = 0.0056
*->GaGgaNvitkvGdggdlaf<-*
Ga+g+ i++ G++gd+++
gi|1538179 101 GAAGGVSIDHLGNHGDVSY 119
RtxA: domain 3 of 48, from 121 to 139: score 18.3, E = 0.00029
*->GaGgaNvitkvGdggdlaf<-*
Ga+++N it++G +g+++f
gi|1538179 121 GAAAYNGITRKGLSGNVTF 139
RtxA: domain 4 of 48, from 141 to 159: score 17.7, E = 0.00044
*->GaGgaNvitkvGdggdlaf<-*
GaGg+N +++ ++g+l+f
gi|1538179 141 GAGGYNALWHETNQGNLSF 159
RtxA: domain 5 of 48, from 161 to 185: score 16.2, E = 0.0012
*->GaGgaNvitkv......Gdggdlaf<-*
GaG++N+++++ +++ +G++gd++f
gi|1538179 161 GAGAGNKLDRTwsnryqGSHGDVTF 185
Fil_haemagg: domain 1 of 1, from 178 to 255: score 2.6, E = 5.1
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE....
*->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtliag
+ G++t + a +++n + + + +g++t ++ag++n +
gi|1538179 178 GSHGDVTFDGA----GAANSISSRVETGNITFRGAGADNHLVRKGKV 220
CS .............. .EEEEESS-EEEEE
gdlllaagalrngg.......dltltaaGdLdnsg<-*
gd++l+++ ++n+ +++++ +d+ ++G+++ g
gi|1538179 221 GDITLQGAGASNRIerthqaeDVYTQTRGNIRFEG 255
RtxA: domain 6 of 48, from 187 to 205: score 17.5, E = 0.0005
*->GaGgaNvitkvGdggdlaf<-*
GaG+aN i ++++ g+++f
gi|1538179 187 GAGAANSISSRVETGNITF 205
RtxA: domain 7 of 48, from 207 to 225: score 17.1, E = 0.00065
*->GaGgaNvitkvGdggdlaf<-*
GaG+ N+++++G+ gd+++
gi|1538179 207 GAGADNHLVRKGKVGDITL 225
RtxA: domain 8 of 48, from 255 to 273: score 15.9, E = 0.0015
*->GaGgaNvitkvGdggdlaf<-*
G Gg+N +++ +++gd++f
gi|1538179 255 GVGGYNSLYSDVAHGDIHF 273
RtxA: domain 9 of 48, from 275 to 293: score 15.2, E = 0.0025
*->GaGgaNvitkvGdggdlaf<-*
G+G++N i ++G+g+d a
gi|1538179 275 GGGAYNTIIRKGSGNDFAK 293
SOR: domain 1 of 1, from 340 to 360: score 8.1, E = 0.036
*->pkpyvAINmakvkNePktlEL<-*
y IN+++++N+P+t EL
gi|1538179 340 DSTYTKINKVQLRNDPQTGEL 360
ubiquitin: domain 1 of 1, from 398 to 419: score 2.4, E = 6.8
CS BCGGCTTTTTE EEEEEEESSS
*->tLseYniqdgs.ftlhlvlrlr<-*
tLs+++++++ ++t+h v +
gi|1538179 398 TLSDLKVEHQQsVTVHAVEKSL 419
Peptidase_M6: domain 1 of 1, from 481 to 497: score 1.1, E = 1.3
*->LKikvlgQAkdgSagav<-*
+Ki v++ A+d ++ga+
gi|1538179 481 TKIVVVELANDPETGAL 497
SURF4: domain 1 of 1, from 549 to 566: score 0.5, E = 5.7
*->neviaraEDlAENtfvrk<-*
+e a +E++++ t++++
gi|1538179 549 SETVADIEEYTDQTLFKP 566
DUF2190: domain 1 of 1, from 567 to 580: score 7.5, E = 0.12
*->AagsGaatvaVkLn<-*
A++sG+ +++V++n
gi|1538179 567 ANDSGESSGDVRFN 580
RtxA: domain 10 of 48, from 581 to 599: score 15.4, E = 0.0021
*->GaGgaNvitkvGdggdlaf<-*
GaGg+Nvi + +++g+++f
gi|1538179 581 GAGGGNVIKSNVTRGNVHF 599
Fimbrial: domain 1 of 1, from 595 to 601: score 0.5, E = 9.6
*->GtvtFkG<-*
G+v+F+G
gi|1538179 595 GNVHFNG 601
RtxA: domain 11 of 48, from 601 to 619: score 16.9, E = 0.00075
*->GaGgaNvitkvGdggdlaf<-*
G+G aNvi ++++ g+++f
gi|1538179 601 GGGIANVILHSSQFGNTEF 619
RtxA: domain 12 of 48, from 621 to 639: score 25.1, E = 2.7e-06
*->GaGgaNvitkvGdggdlaf<-*
G+G+aNvi+k+G++gdl+f
gi|1538179 621 GGGAANVIVKSGEEGDLTF 639
RtxA: domain 13 of 48, from 641 to 659: score 16.9, E = 0.00079
*->GaGgaNvitkvGdggdlaf<-*
GaG aNv+++ +++g +++
gi|1538179 641 GAGLANVLVHQSEQGKMDV 659
RtxA: domain 14 of 48, from 661 to 679: score 14.0, E = 0.0055
*->GaGgaNvitkvGdggdlaf<-*
++G+ Nv+++ Gdg++la+
gi|1538179 661 AGGAVNVLVRLGDGQYLAH 679
YiaAB: domain 1 of 1, from 680 to 694: score 1.9, E = 9
*->lltfsavtlqKytrD<-*
ll+++++ +qK ++D
gi|1538179 680 LLAYGNISVQKGSGD 694
RtxA: domain 15 of 48, from 699 to 717: score 6.9, E = 0.75
*->GaGgaNvitkvGdggdlaf<-*
++Gg+N t++G+g+ l +
gi|1538179 699 MLGGYNTHTQIGSGNGLWL 717
RtxA: domain 16 of 48, from 718 to 735: score 18.5, E = 0.00024
*->GaGgaNvitkvGdggdlaf<-*
+aGg Nv+t+vG gd+a+
gi|1538179 718 AAGGFNVMTQVG-KGDVAA 735
DUF523: domain 1 of 1, from 729 to 761: score 1.0, E = 8.1
*->skGdGgdVLdGrarvvtskdtGeDVTeaflagAe<-*
+kGd ++VL+G a v+t+ + +T +l gA+
gi|1538179 729 GKGDVAAVLAGGANVLTK-MGEGELTSGMLGGAN 761
RtxA: domain 17 of 48, from 738 to 754: score 13.9, E = 0.0059
*->aGgaNvitkvGdggdlaf<-*
aGgaNv+tk+G +g+l+
gi|1538179 738 AGGANVLTKMG-EGELTS 754
RtxA: domain 18 of 48, from 756 to 774: score 16.9, E = 0.00077
*->GaGgaNvitkvGdggdlaf<-*
++GgaNvit+++++ l+
gi|1538179 756 MLGGANVITHISNDDQLSN 774
RtxA: domain 19 of 48, from 779 to 797: score 22.7, E = 1.4e-05
*->GaGgaNvitkvGdggdlaf<-*
++GgaN++tk+G+g++la+
gi|1538179 779 ALGGANILTKKGKGNTLAV 797
DUF1786: domain 1 of 1, from 798 to 804: score -1.0, E = 8.8
*->MGGGPvT<-*
MGGG+++
gi|1538179 798 MGGGANV 804
RtxA: domain 20 of 48, from 798 to 816: score 21.0, E = 4.6e-05
*->GaGgaNvitkvGdggdlaf<-*
++GgaNv+t+vGdg ++ +
gi|1538179 798 MGGGANVLTHVGDGTTTGV 816
RtxA: domain 21 of 48, from 817 to 834: score 16.9, E = 0.00078
*->GaGgaNvitkvGdggdlaf<-*
+ GgaN++tkvG +gd++
gi|1538179 817 MVGGANILTKVG-NGDTTG 834
Sec_GG: domain 1 of 1, from 818 to 833: score 3.8, E = 3.2
*->kGGtrillkvdksvtq<-*
+GG++il+kv + +t+
gi|1538179 818 VGGANILTKVGNGDTT 833
Bombolitin: domain 1 of 1, from 831 to 846: score 3.7, E = 4
*->iKitDiLAKLGKvLAHv<-*
t iL +G vL Hv
gi|1538179 831 -DTTGILLGVGNVLTHV 846
RtxA: domain 22 of 48, from 837 to 854: score 14.0, E = 0.0057
*->aGgaNvitkvGdggdlaf<-*
+G++Nv+t+vGdg++l +
gi|1538179 837 LGVGNVLTHVGDGQTLGV 854
RtxA: domain 23 of 48, from 855 to 873: score 17.1, E = 0.00068
*->GaGgaNvitkvGdggdlaf<-*
+++++N+ tkvGdg ++a+
gi|1538179 855 MGAAGNIFTKVGDGTSIAV 873
Spore_III_AE: domain 1 of 1, from 870 to 881: score 4.8, E = 0.56
*->aItIivgaGNit<-*
+I++++gaGNi
gi|1538179 870 SIAVMIGAGNIF 881
RtxA: domain 24 of 48, from 874 to 892: score 17.4, E = 0.00052
*->GaGgaNvitkvGdggdlaf<-*
++G++N+ t+vG+g+ a+
gi|1538179 874 MIGAGNIFTHVGEGNAWAL 892
RtxA: domain 25 of 48, from 893 to 911: score 15.2, E = 0.0024
*->GaGgaNvitkvGdggdlaf<-*
++G +Nv tkvG+g la+
gi|1538179 893 MGGLGNVFTKVGNGDALAL 911
RPAP1_C: domain 1 of 1, from 896 to 907: score 1.9, E = 7.5
*->LgrILyklgkge<-*
Lg+++ k+g+g+
gi|1538179 896 LGNVFTKVGNGD 907
DUF1623: domain 1 of 1, from 903 to 920: score 2.2, E = 4.3
*->CPcNGDCLAVvvssdnitt<-*
+ +NGD LA+ v ++n++t
gi|1538179 903 V-GNGDALALMVAEANVFT 920
Herpes_MCP: domain 1 of 1, from 910 to 922: score -2.6, E = 9.4
CS XXXXXXXXXXXXX
*->PylapsgnLLsqI<-*
+ +++++n++++I
gi|1538179 910 ALMVAEANVFTHI 922
RtxA: domain 26 of 48, from 912 to 930: score 16.4, E = 0.0011
*->GaGgaNvitkvGdggdlaf<-*
+ ++aNv t++Gdg ++a+
gi|1538179 912 MVAEANVFTHIGDGMSVAL 930
Hydrolase: domain 1 of 3, from 921 to 945: score 3.7, E = 1.2
CS EEESSCHHHHHHHHCTEEEEEESSH
*->mVGDgvnDapalaaAGvgvamgngg<-*
++GDg a +la+ +v++ gng+
gi|1538179 921 HIGDGMSVALMLAKGNVATKVGNGT 945
RtxA: domain 27 of 48, from 931 to 949: score 15.2, E = 0.0025
*->GaGgaNvitkvGdggdlaf<-*
+++++Nv tkvG+g +la+
gi|1538179 931 MLAKGNVATKVGNGTTLAA 949
RtxA: domain 28 of 48, from 950 to 968: score 12.0, E = 0.022
*->GaGgaNvitkvGdggdlaf<-*
+ G N+ t++G+g + a+
gi|1538179 950 MVGNVNIFTHIGHGSTFAA 968
RtxA: domain 29 of 48, from 969 to 987: score 18.3, E = 0.00029
*->GaGgaNvitkvGdggdlaf<-*
++G+aN++tkvG++ + a+
gi|1538179 969 MIGQANIMTKVGNDLTAAL 987
RtxA: domain 30 of 48, from 988 to 1006: score 21.4, E = 3.5e-05
*->GaGgaNvitkvGdggdlaf<-*
+ G+aN++t+vGdg +l +
gi|1538179 988 MVGKANIMTHVGDGTSLGL 1006
Phge_rel_HI1409: domain 1 of 1, from 989 to 1003: score 1.2, E = 9.3
*->DglqnflaglGtgrd<-*
g +n+++ +G+g++
gi|1538179 989 VGKANIMTHVGDGTS 1003
RtxA: domain 31 of 48, from 1008 to 1025: score 13.1, E = 0.01
*->aGgaNvitkvGdggdlaf<-*
aG+ Nv+tkvG+g +la+
gi|1538179 1008 AGEVNVMTKVGNGTTLAA 1025
RtxA: domain 32 of 48, from 1026 to 1043: score 16.0, E = 0.0015
*->GaGgaNvitkvGdggdlaf<-*
+ G+aN++t+vG +g + +
gi|1538179 1026 MFGKANIMTHVG-DGLTGV 1043
DegV: domain 1 of 1, from 1032 to 1048: score 3.6, E = 1.2
CS HHHHH-TT-EEEEEEEE
*->IgtHtGpGalgvaiipk<-*
I tH+G G gv+++++
gi|1538179 1032 IMTHVGDGLTGVLALGE 1048
Hydrolase: domain 2 of 3, from 1035 to 1059: score 1.3, E = 6.1
CS EEESSCHHHHHHHHCTEEEEEESSH
*->mVGDgvnDapalaaAGvgvamgngg<-*
+VGDg+ ++ al A++ + +g
gi|1538179 1035 HVGDGLTGVLALGEANIVTKLGDDF 1059
RtxA: domain 33 of 48, from 1045 to 1062: score 10.1, E = 0.079
*->GaGgaNvitkvGdggdlaf<-*
++G+aN++tk G + + +
gi|1538179 1045 ALGEANIVTKLG-DDFMGV 1062
RtxA: domain 34 of 48, from 1064 to 1082: score 17.1, E = 0.00066
*->GaGgaNvitkvGdggdlaf<-*
+a++aNv+t+vGd + a+
gi|1538179 1064 AAAKANVVTHVGDATTAAV 1082
RtxA: domain 35 of 48, from 1084 to 1101: score 14.9, E = 0.0031
*->aGgaNvitkvGdggdlaf<-*
aG++N++tkvG+g ++ +
gi|1538179 1084 AGKGNILTKVGEGTTVGL 1101
RtxA: domain 36 of 48, from 1107 to 1121: score 7.7, E = 0.43
*->aNvitkvGdggdlaf<-*
+Nv+t+vGdg ++
gi|1538179 1107 GNVMTHVGDGTTIGI 1121
Big_2: domain 1 of 2, from 1120 to 1142: score 1.4, E = 10
CS E-SSS-EEEEEEETT.TEEEEEEE
*->alakGtatItatsgdgnksasvtv<-*
++akG+a+ ++gd + ++ vt
gi|1538179 1120 GIAKGKANLITKVGD-GLGVNVTW 1142
RtxA: domain 37 of 48, from 1122 to 1140: score 17.9, E = 0.00039
*->GaGgaNvitkvGdggdlaf<-*
++G+aN itkvGdg +++
gi|1538179 1122 AKGKANLITKVGDGLGVNV 1140
Adeno_shaft: domain 1 of 3, from 1127 to 1139: score 4.9, E = 3.6
CS -EEE-B-TTEEEE
*->aLalklGagLtvd<-*
+L +k+G+gL+v+
gi|1538179 1127 NLITKVGDGLGVN 1139
RtxA: domain 38 of 48, from 1141 to 1159: score 11.6, E = 0.029
*->GaGgaNvitkvGdggdlaf<-*
+G+aNv t+vGdg +f
gi|1538179 1141 TWGQANVFTQVGDGDRYNF 1159
RtxA: domain 39 of 48, from 1160 to 1178: score 20.2, E = 7.9e-05
*->GaGgaNvitkvGdggdlaf<-*
++G+aN itkvGdg+++++
gi|1538179 1160 AKGEANLITKVGDGQEVSV 1178
RtxA: domain 40 of 48, from 1181 to 1197: score 11.9, E = 0.023
*->GgaNvitkvGdggdlaf<-*
G+aN+it+vG+g d +
gi|1538179 1181 GEANIITHVGNGDDYTG 1197
Glyco_hydro_16: domain 1 of 2, from 1191 to 1216: score 4.3, E = 0.74
CS SBTTBTTEE-GGGEEEE...TT...SEEEE
*->fgedfdvtwgggnvsvsedpndadGggLtL<-*
+g+d++ wg+ nv + +G++++L
gi|1538179 1191 NGDDYTGAWGKANVITK---VG-HGQNVVL 1216
RtxA: domain 41 of 48, from 1198 to 1216: score 21.2, E = 3.9e-05
*->GaGgaNvitkvGdggdlaf<-*
++G+aNvitkvG+g+++ +
gi|1538179 1198 AWGKANVITKVGHGQNVVL 1216
Ins_P5_2-kin: domain 1 of 1, from 1215 to 1224: score -1.3, E = 9.8
*->YlaEGgANiV<-*
la+G ANiV
gi|1538179 1215 VLAKGEANIV 1224
RtxA: domain 42 of 48, from 1217 to 1235: score 15.9, E = 0.0015
*->GaGgaNvitkvGdggdlaf<-*
++G+aN++t+vGdg + ++
gi|1538179 1217 AKGEANIVTQVGDGDSFNA 1235
Glyco_hydro_16: domain 2 of 2, from 1229 to 1256: score 4.9, E = 0.48
CS SBTTBTTEE-GGGEEEE...TT...SEEEEEEEE
*->fgedfdvtwgggnvsvsedpndadGggLtLtldk<-*
g+ f+++w++gn++ + +g++ t++k
gi|1538179 1229 DGDSFNALWSKGNIVTK---VG---DGMQVTAAK 1256
Adeno_shaft: domain 2 of 3, from 1239 to 1272: score 3.7, E = 7.6
CS S--EEE-B-TTEEE-TS- EEE-B-TTEEEE
*->nnsLtlntgpGLtvtnna....LalklGagLtvd<-*
+++ ++g+G++vt +++ ++++ +G+gL+v+
gi|1538179 1239 KGNIVTKVGDGMQVTAAKgqanITTTVGNGLNVT 1272
RtxA: domain 43 of 48, from 1239 to 1254: score 7.0, E = 0.7
*->gaNvitkvGdggdlaf<-*
++N++tkvGdg +++
gi|1538179 1239 KGNIVTKVGDGMQVTA 1254
Autotransporter: domain 1 of 2, from 1252 to 1302: score 1.0, E = 6.5
CS ---- ---- --.---------EEEEEEEEEEEEECTTEEEEEEEEE
*->vnsa.llaa.gslfgvasgtpldrtalslgaGlelklgsnlslflny
v++a+++a+ ++++g+ l+ ta+ a+ ++k+g+++s+++ +
gi|1538179 1252 VTAAkGQANiTTTVGNG----LNVTAAYGDANINTKVGDGVSVNVAW 1294
CS E....TTEEEEE
saefgsqlsdng<-*
+ ++ +++
gi|1538179 1295 G----KYNINTK 1302
Big_2: domain 2 of 2, from 1255 to 1275: score 1.2, E = 11
CS SSS-EEEEEEETT.TEEEEEEE
*->akGtatItatsgdgnksasvtv<-*
akG+a+It t+g+ + +++
gi|1538179 1255 AKGQANITTTVGN-GLNVTAAY 1275
RtxA: domain 44 of 48, from 1255 to 1273: score 15.4, E = 0.0021
*->GaGgaNvitkvGdggdlaf<-*
++G+aN+ t vG+g ++++
gi|1538179 1255 AKGQANITTTVGNGLNVTA 1273
RtxA: domain 45 of 48, from 1274 to 1292: score 15.2, E = 0.0024
*->GaGgaNvitkvGdggdlaf<-*
+ G aN+ tkvGdg ++++
gi|1538179 1274 AYGDANINTKVGDGVSVNV 1292
RtxA: domain 46 of 48, from 1293 to 1311: score 23.0, E = 1.1e-05
*->GaGgaNvitkvGdggdlaf<-*
++G++N+ tkvGdg ++a+
gi|1538179 1293 AWGKYNINTKVGDGLNVAV 1311
Adeno_shaft: domain 3 of 3, from 1298 to 1310: score 2.3, E = 19
CS -EEE-B-TTEEEE
*->aLalklGagLtvd<-*
++++k+G+gL+v
gi|1538179 1298 NINTKVGDGLNVA 1310
Hydrolase: domain 3 of 3, from 1312 to 1345: score 0.2, E = 13
CS HTSSGGGE.....EEEESSCHHHHHHHHCTEEEEEESSH
*->lgvkpeevakpevlmVGDgvnDapalaaAGvgvamgngg<-*
+++k + ++VGDg+n ++ a+ +v++ gng
gi|1538179 1312 MKGKANAN-----IHVGDGLNINASYAQNNVAIKVGNGD 1345
RtxA: domain 47 of 48, from 1312 to 1330: score 14.8, E = 0.0033
*->GaGgaNvitkvGdggdlaf<-*
++G+aN +vGdg ++++
gi|1538179 1312 MKGKANANIHVGDGLNINA 1330
Flp_Fap: domain 1 of 1, from 1350 to 1373: score 7.6, E = 0.5
*->AVayvttlgitaLktkFtkigtalt<-*
AVa ++t++ ++L+++F +i ++
gi|1538179 1350 AVASSNTSS-NKLSALFDNIKQTVL 1373
DUF411: domain 1 of 1, from 1432 to 1450: score 1.0, E = 1.4
*->eVtvhdtdqDlaavKqrlGv<-*
+Vt +dt Dl+ +l v
gi|1538179 1432 SVTKVDTP-DLNKMQHALNV 1450
CBM_4_9: domain 1 of 1, from 1458 to 1483: score 4.9, E = 0.63
*->gnlikngtFEdpgglsgWkarggstvkatv<-*
nli+ng+FE g gW+ + g v+a++
gi|1538179 1458 PNLIVNGDFEL--GEHGWQSTHG--VEASY 1483
Vif: domain 1 of 1, from 1460 to 1483: score 2.2, E = 2.9
*->levqgYWhLlTPErGWlStyaVgiqw<-*
l+v g + L +E GW St++V ++
gi|1538179 1460 LIVNGDFEL--GEHGWQSTHGVEASY 1483
Cas_TM1812: domain 1 of 1, from 1502 to 1519: score 0.6, E = 6.8
*->vdrFlntGdarplasLlk<-*
+d+++nt ++ la+L++
gi|1538179 1502 LDTYTNTSLYQDLANLAQ 1519
EsxB: domain 1 of 1, from 1502 to 1517: score 4.0, E = 1.1
*->iqkFdnlSevkeiKrL<-*
+++++n+S +++ +L
gi|1538179 1502 LDTYTNTSLYQDLANL 1517
DUF918: domain 1 of 1, from 1613 to 1632: score 3.1, E = 2.7
*->dqpgdtpayvepddkeRnelDRe<-*
++p +a++ ++dkeR+e DR+
gi|1538179 1613 QNP---AAQNALSDKERAEADRQ 1632
zf-dskA_traR: domain 1 of 1, from 1616 to 1635: score 1.5, E = 7.9
*->MADelDfaqeveeelrerkLa<-*
+A+++ + e+ e++r+r L+
gi|1538179 1616 AAQNALSDKERAEADRQR-LE 1635
M: domain 1 of 3, from 1622 to 1640: score 1.1, E = 54
*->eaKKeLEaelqeLeeelqk<-*
+ K+ Ea++q Le+e+qk
gi|1538179 1622 SDKERAEADRQRLEQEKQK 1640
Spc24: domain 1 of 1, from 1631 to 1655: score 1.7, E = 9
*->ileldnekfrlakelndLEseinsL<-*
+++l++ek++ ++++ +s+++s+
gi|1538179 1631 RQRLEQEKQKQLDAVAGSQSQLEST 1655
DUF1814: domain 1 of 1, from 1639 to 1689: score 1.6, E = 2.9
*->dgil.aeaa.gllllapwleflkei.la...........ltedyeef
+++l+a a ++++l++ +++ l+ +++a+++ +++++ +t++++++
gi|1538179 1639 QKQLdAVAGsQSQLESTDQQALENNgQAqrdavkeeseaVTAELAKL 1685
lesl<-*
++ l
gi|1538179 1686 AQGL 1689
Tir_receptor_C: domain 1 of 1, from 1660 to 1668: score 0.7, E = 5.2
*->iEsNAQAQq<-*
E+N QAQ+
gi|1538179 1660 LENNGQAQR 1668
DUF556: domain 1 of 1, from 1662 to 1679: score 1.4, E = 3.4
*->naGrIkReLVkeLkelvd<-*
n+G +R++Vke e+v
gi|1538179 1662 NNGQAQRDAVKEESEAVT 1679
M: domain 2 of 3, from 1673 to 1693: score 9.2, E = 0.38
*->eaKKeLEaelqeLeeelqkLe<-*
e+ ++++ael++L + l+ L+
gi|1538179 1673 EESEAVTAELAKLAQGLDVLD 1693
Alpha_adaptin_C: domain 1 of 1, from 1675 to 1685: score 2.2, E = 6
*->neaVsqtLlkl<-*
+eaV+++L+kl
gi|1538179 1675 SEAVTAELAKL 1685
CHASE3: domain 1 of 1, from 1707 to 1739: score 1.6, E = 9.1
*->rsdrGKtlmdeiRelldqmreeEerlLaqrnaa<-*
r+d + l+d +++ld+ ++ ++ +a++++
gi|1538179 1707 RNDFAGGLLDGVQSQLDDAKQLANDKIAAAKQT 1739
DUF1970: domain 1 of 1, from 1709 to 1739: score -0.6, E = 9.8
*->DLAsKLtdsitsqLnnYAesLnDYLAsqAGv<-*
D A+ L d + sqL + + nD +A+
gi|1538179 1709 DFAGGLLDGVQSQLDDAKQLANDKIAAAKQT 1739
M: domain 3 of 3, from 1735 to 1755: score 5.5, E = 3.7
*->eaKKeLEaelqeLeeelqkLe<-*
+aK++L +++ +e k+e
gi|1538179 1735 AAKQTLSDNNSKVKESVAKSE 1755
DUF627: domain 1 of 1, from 1736 to 1747: score 1.2, E = 9.8
*->AKqaLSvtspidk<-*
AKq+LS +++ +
gi|1538179 1736 AKQTLSDNNS-KV 1747
DUF1940: domain 1 of 1, from 1738 to 1754: score 1.6, E = 1.4
CS HTTT-------HHHHHH
*->nsLyDkeskLndfqeKr<-*
+ L+D +sk ++++ K+
gi|1538179 1738 QTLSDNNSKVKESVAKS 1754
Strep_SA_rep: domain 1 of 1, from 1752 to 1776: score 3.2, E = 6.7
*->adYeakLaqYqadLArvqkanaane<-*
a ea +aq ++ A v ++ a+++
gi|1538179 1752 AKSEAGVAQGEQNRAGVEQDIADAQ 1776
BAT2_N: domain 1 of 1, from 1761 to 1776: score 1.9, E = 2.7
*->Gdqdksgkekdatdes<-*
G+q ++g e+d++d+
gi|1538179 1761 GEQNRAGVEQDIADAQ 1776
TPD52: domain 1 of 1, from 1858 to 1891: score 3.7, E = 1
*->dedgLlvtdplvEtkedtnesssatkevLSEaEkeEL<-*
g +td+ v t+ tn++ ++ e L+E E+e L
gi|1538179 1858 --EGAGETDSHVNTDSQTNADGRFS-EGLTEQEQEAL 1891
Phage-tail_2: domain 1 of 1, from 1915 to 1937: score 1.9, E = 6.3
CS EEEEEEEEE-SS----S-----B-S
*->SiThLYMftNsekleeeePvKVKnE<-*
S+T+++ tNs+ + P KV E
gi|1538179 1915 SMTSMFSETNSKSIVV--PTKVSPE 1937
LTV: domain 1 of 1, from 2002 to 2020: score 3.4, E = 0.66
*->eKKkAqsFhLVHRsQrDPla<-*
K+ Aq+F VH sQ Pl+
gi|1538179 2002 -KNSAQTFGYVHDSQGNPLF 2020
CBM49: domain 1 of 1, from 2007 to 2015: score 4.1, E = 1.6
*->sFGYIhksq<-*
+FGY+h sq
gi|1538179 2007 TFGYVHDSQ 2015
SCO1-SenC: domain 1 of 1, from 2088 to 2111: score 1.5, E = 4.7
CS TT--EEEEE-TTSEEEEEE..ESS
*->dHSsffYLIdpdGkilkhYgrnld<-*
+H+s+ L++ dG++ + + ++
gi|1538179 2088 NHQSLPHLVSDDGRFTLVISNSKH 2111
Vinculin: domain 1 of 1, from 2147 to 2164: score -1.4, E = 8.6
CS XXXCGSXXXXBXSSXXXX
*->gtvssprlrWkrKaPwkq<-*
gt ssp +r + aPw+q
gi|1538179 2147 GTSSSPEVRLLESAPWYQ 2164
PilN: domain 1 of 1, from 2154 to 2178: score 2.3, E = 2.4
*->lrnLeaSklltapelssvlakaqgk<-*
+r Le+ ++++a + ++la+a++
gi|1538179 2154 VRLLESAPWYQAGLRDEFLANAKNT 2178
DUF679: domain 1 of 1, from 2197 to 2205: score 0.7, E = 6.6
*->LsstAnLak<-*
+s tA+Lak
gi|1538179 2197 YSKTADLAK 2205
zf-CHC2: domain 1 of 1, from 2202 to 2216: score 3.6, E = 2.7
*->kLAdragielpyekg<-*
+LA+++gi ++++++
gi|1538179 2202 DLAKEYGIYINDWDP 2216
H-kinase_dim: domain 1 of 1, from 2329 to 2342: score 2.1, E = 8.9
CS --EEEEEHHHHHHH
*->sqtIRVdverLDrL<-*
t++Vdv+ LD++
gi|1538179 2329 ASTVKVDVKALDHF 2342
Chlor_dismutase: domain 1 of 1, from 2345 to 2359: score 1.0, E = 7.9
*->eeReaiidEfsefvle<-*
+ R+aii+E++++ ++
gi|1538179 2345 ASRKAIITEVNAL-VS 2359
DUF469: domain 1 of 1, from 2364 to 2368: score -0.5, E = 8.8
*->vDaWy<-*
+DaWy
gi|1538179 2364 FDAWY 2368
CDC37_C: domain 1 of 1, from 2402 to 2429: score 1.5, E = 9
*->kkfkEleaey.dneeeaekeeeeeedge<-*
++++ + a+y+dn+e ++++ +d+e
gi|1538179 2402 EQWAKITAPYtDNHETLTSTKLASNDKE 2429
DUF842: domain 1 of 1, from 2443 to 2460: score 1.4, E = 7.8
*->erkqervqsavdsmlddl<-*
+++qe v s + +ml+d+
gi|1538179 2443 NKQQENVASIINTMLNDM 2460
TIM21: domain 1 of 1, from 2494 to 2502: score 2.0, E = 4.5
*->krIylednr<-*
k+I+led++
gi|1538179 2494 KTIILEDPE 2502
DIRP: domain 1 of 1, from 2521 to 2541: score 2.1, E = 7.5
*->lkdLPkklPlPLavgtrVtArlrg<-*
++++P++l l v+++V++ + g
gi|1538179 2521 FEQMPDELFL---VDNKVISHHEG 2541
IgG_binding_B: domain 1 of 1, from 2550 to 2567: score 3.0, E = 4
*->VdGewlydtatktftvte<-*
VdG w y + vte
gi|1538179 2550 VDGAWQYNATVELMSVTE 2567
Peptidase_C9: domain 1 of 1, from 2594 to 2614: score 0.4, E = 3.3
*->HsLVaehkekrgarveklvnk<-*
H+ +eh +++ vekl+n
gi|1538179 2594 HASITEHADYEPESVEKLLNL 2614
VWA_CoxE: domain 1 of 1, from 2599 to 2627: score 1.7, E = 4.6
*->arrdfaqlsaeelrrLaralaaLrRklllrlar<-*
++d+++ s+e l L+++++ + l++++
gi|1538179 2599 EHADYEPESVEKLLNLRKKIEG----YVLGHPD 2627
DUF936: domain 1 of 1, from 2606 to 2635: score -0.1, E = 3.1
*->etkEkiErLrkKIYgfLLtHVesaasales<-*
e++Ek +LrkKI g++L+H +s + +
gi|1538179 2606 ESVEKLLNLRKKIEGYVLGHPDSGRVEAMN 2635
DUF642: domain 1 of 1, from 2645 to 2654: score -1.3, E = 9.9
*->iDdVsvvsvg<-*
+D+Vs++sv+
gi|1538179 2645 LDEVSLLSVA 2654
Ada3: domain 1 of 1, from 2653 to 2673: score 2.5, E = 2.9
*->vkiqaaarpgendslktLldk<-*
v++q ++++ +++l+++l+
gi|1538179 2653 VAEQTIQAQNSFSRLYDQLEA 2673
PKD: domain 1 of 1, from 2714 to 2732: score 3.4, E = 1.7
CS EEEEEEETTCEEEEEEEEEEE
*->VtLtvsngvgsasattttvtV<-*
V+Ltvsn++g ++a t+
gi|1538179 2714 VKLTVSNEYGQTVA--DTIFA 2732
SecA_PP_bind: domain 1 of 1, from 2755 to 2759: score 1.3, E = 8.5
CS HHHHH
*->HQAIE<-*
HQAIE
gi|1538179 2755 HQAIE 2759
Arch_fla_DE: domain 1 of 1, from 2875 to 2883: score 0.6, E = 9.1
*->YIErLaGrk<-*
+IE+L++ k
gi|1538179 2875 FIEKLNAAK 2883
Cast: domain 1 of 1, from 2935 to 2959: score -2.1, E = 6.8
*->AHeaevelRanaesadrgsavdagt<-*
AH + elR++a+++d+++ +++ +
gi|1538179 2935 AHRFAQELRLQAQRSDDPELLEKRI 2959
DUF1732: domain 1 of 1, from 2939 to 2950: score 3.8, E = 1.9
*->aQEvalfAdKaD<-*
aQE+ l A+++D
gi|1538179 2939 AQELRLQAQRSD 2950
CRISPR_Cse1: domain 1 of 1, from 2941 to 2973: score 1.1, E = 3.4
*->d.qddggqpddppearaaWqqtArkalrrlAlrlFda<-*
+ ++ + ddp+ + + ++++r+ A+r++++
gi|1538179 2941 ElRLQAQRSDDPELLEKRI----GNVIRQFAERALEE 2973
HisKA_2: domain 1 of 1, from 2942 to 2956: score 2.9, E = 3.1
*->LrLQarkfkdeevikdEVle<-*
LrLQa++++d+e le
gi|1538179 2942 LRLQAQRSDDPEL-----LE 2956
DUF2286: domain 1 of 1, from 2953 to 2973: score 2.2, E = 5.7
*->dvvEGdlekVlrdvAarALeE<-*
+++E ++++V+r A+rALeE
gi|1538179 2953 ELLEKRIGNVIRQFAERALEE 2973
L27_1: domain 1 of 1, from 2962 to 2993: score 3.0, E = 1.4
*->MPvkkqdtqRALqlLEeyqskLSqt.gDraLRssiE<-*
v +q ++RAL+ +E ++ Sq+++ r +R E
gi|1538179 2962 --VIRQFAERALEEIETFKA--SQAdQGRVFRINLE 2993
Leuk-A4-hydro_C: domain 1 of 1, from 3021 to 3030: score 1.5, E = 4.5
*->icramVeKdL<-*
+c+++V+K+L
gi|1538179 3021 NCSSTVAKVL 3030
TM_helix: domain 1 of 1, from 3023 to 3040: score 3.6, E = 3.7
*->sdlvaklLkklgldslva<-*
s+ vak+Lk+ g d l++
gi|1538179 3023 SSTVAKVLKAGGADKLIG 3040
Abhydrolase_2: domain 1 of 2, from 3167 to 3193: score 1.0, E = 7.7
*->laypaivspakpaqalvIfLHGLGDtg<-*
+ p ++++p+ ++v+fLHG G+++
gi|1538179 3167 GTAPSEGETSSPSGKVVLFLHGSGSSA 3193
PGAP1: domain 1 of 1, from 3177 to 3194: score 3.4, E = 1.2
*->elsGiPVLFIPGldfNaGSyk<-*
+sG +VLF++G ++ S +
gi|1538179 3177 SPSGKVVLFLHG---SGSSAE 3194
Abhydrolase_1: domain 1 of 1, from 3209 to 3319: score 21.4, E = 1e-05
CS CEEEEECTTTSTTSSEE..GGCCGGGSHHHHHHHHHHHHHHHCTSSE
*->fdvialDlrGfGqSsrpkrgapdladyrfddlaedlealldalgldk
d +a++lrG+G+S+ + + + + d+ ++++l+ g+d
gi|1538179 3209 IDMLAVNLRGYGESD-G----GPSEKGLYQDARTMFNYLVNDKGIDP 3250
CS E EEEEEETHHHHHH HHHHHHCGGTCEEEEEEESSS HH
p.vnlvGhSmGGlia...layaakypelrvkalvlvgtv.........lp
++++ G+SmGG ia + ++yaa+ ++ v++l l+ ++++ ++ + ++
gi|1538179 3251 SnIIIHGYSMGGPIAadlARYAAQNGQ-AVSGLLLDRPMpsmtkaitaHE 3299
CS HCHCSTCHHHH HHHHHHHH
aglssplvprl.gnleglla<-*
++ ++ +v ++ + +g+++
gi|1538179 3300 VANPAGIVGAIaKAVNGQFS 3319
Abhydrolase_3: domain 1 of 1, from 3232 to 3284: score 5.0, E = 0.5
CS HHHHHHHHHHHHHTH.........H.HHTEEEEEEEEEEETHHHHHH
*->idDayaAlrWlaehavgsggeddpwlelgaDpsriavaGDSAGGNLA
+ Da + + +l+ g+Dps+i + G S GG +A
gi|1538179 3232 YQDARTMFNYLVNDK-------------GIDPSNIIIHGYSMGGPIA 3265
CS HHHH.HHHHHCTSS-...........EEEEEE
aavAqlrardrGgplaeldpdlspvrpagqvL<-*
a +A a + +g++ ++g++L
gi|1538179 3266 ADLA-RYAAQ-NGQA-----------VSGLLL 3284
Gp_dh_N: domain 1 of 1, from 3238 to 3254: score 0.4, E = 1.8
CS EETTTSGGGGGTTTTSEEE
*->TfVyGVNhddYdpekhkiV<-*
+f+y VN+ +dp+ +i+
gi|1538179 3238 MFNYLVNDKGIDPS--NII 3254
OmpA: domain 1 of 1, from 3240 to 3265: score 3.9, E = 2.4
*->dyLvskgGvpadrisavGyGeskPva<-*
+yLv+ G+++++i Gy + P+a
gi|1538179 3240 NYLVNDKGIDPSNIIIHGYSMGGPIA 3265
Abhydrolase_2: domain 2 of 2, from 3245 to 3262: score 2.5, E = 3
*->ktGkeALEeLIleLeIpssrIiiGGFSQGg<-*
++G I++s+Iii G S+Gg
gi|1538179 3245 DKG------------IDPSNIIIHGYSMGG 3262
Thioesterase: domain 1 of 1, from 3257 to 3284: score 2.4, E = 2.4
CS EETTHHHHHHHHHHHHHHT---T--CEEEEE
*->GhSmGGllAfEvArrLerrqdgGeepagLil<-*
G+SmGG +A +Ar ++ G +++gL l
gi|1538179 3257 GYSMGGPIAADLARYAAQN---GQAVSGLLL 3284
DUF2159: domain 1 of 1, from 3370 to 3388: score 4.4, E = 1
*->DAeeRaAreLAdqIvtrLa<-*
+A +R++++ AdqIv L
gi|1538179 3370 EASNRLMSQYADQIVSGLS 3388
FTP: domain 1 of 1, from 3486 to 3506: score 3.5, E = 4.1
*->geliVhvskdGkvksvsGdfs<-*
++++V +++dG + v+Gd s
gi|1538179 3486 SSVVVQLDSDGNYRVVYGDPS 3506
TraH_2: domain 1 of 1, from 3655 to 3662: score 2.8, E = 0.54
*->IDLSgIGa<-*
IDLS+IG
gi|1538179 3655 IDLSRIGV 3662
53-BP1_Tudor: domain 1 of 1, from 3698 to 3717: score 3.3, E = 0.76
CS STT--BEEEEEEEE-SSSEE
*->ssnGYFYsGkitkDaGeGky<-*
ssn + YsG i +GeG +
gi|1538179 3698 SSNQFSYSGNIQVNVGEGEF 3717
Hep_Hag: domain 1 of 2, from 3733 to 3746: score 3.4, E = 9.2
CS ECSTT-EEESTT-E
*->AtganStAiGsnak<-*
+ g++S+A+G+n++
gi|1538179 3733 TGGFKSLAFGDNNV 3746
Autotransporter: domain 2 of 2, from 3740 to 3787: score 2.8, E = 2.1
CS C CS--SSEEEEEEEEEEEEEE-SS-EEE....EEEEEEEEEEEEEE
*->p.gdngvWarglggrlkytdssggingfrfqtesrsgGlqlGidtkl
gdn+v + + g++k +s +i+g++ ++ G++++l
gi|1538179 3740 AfGDNNVMVHIGDGESK---HSVDIGGYQ---------ALEGAQMFL 3774
CS ..ETTEEEEEEEEEEE
tdgdglslGlafgygr<-*
++ ++++ fg+++
gi|1538179 3775 ---GNRNVSFNFGHSN 3787
RtxA: domain 48 of 48, from 3740 to 3757: score 4.7, E = 3.3
*->GaGgaNvitkvGdggdlaf<-*
+ G Nv++++G +g++ +
gi|1538179 3740 AFGDNNVMVHIG-DGESKH 3757
Saf-Nte_pilin: domain 1 of 1, from 3759 to 3766: score 0.9, E = 8.2
*->ldvvaYQa<-*
+d+ +YQa
gi|1538179 3759 VDIGGYQA 3766
Enhancin: domain 1 of 1, from 3793 to 3805: score -0.4, E = 8.6
*->msktleipvlplP<-*
m k++++p+l +P
gi|1538179 3793 MDKSIPTPPLVNP 3805
DUF2134: domain 1 of 1, from 3898 to 3938: score 3.0, E = 2.6
*->AAAqrlsdgsaaaanssaaaaaaAaaaaarngf..gggdlalslsve
++ +ls+++ + +A++ +a n + +g+g+ +++v+
gi|1538179 3898 SGTSQLSRADK---------LRQANEKLAFNFAvgGQGA---DIQVT 3932
cGywna<-*
+G+wn+
gi|1538179 3933 TGNWNF 3938
GET2: domain 1 of 1, from 3955 to 3961: score -0.8, E = 9.2
*->lfGLlsy<-*
lfGL+++
gi|1538179 3955 LFGLMTQ 3961
DUF1417: domain 1 of 1, from 4013 to 4028: score 3.1, E = 3.5
*->gvviDedGeivpGvev<-*
g++++ +G++v+Gv +
gi|1538179 4013 GQIVSRNGQAVDGVAI 4028
DNA_mis_repair: domain 1 of 1, from 4025 to 4048: score 4.3, E = 1.1
CS HHHHHCCE..EEEEEEET...TCCCCCCC
*->GdavaknllPlpiekedgraidfkisgfl<-*
G a++k++ l++ e++ ++++++f+
gi|1538179 4025 GVAILKEM--LEVIGEFS---GDQLQAFV 4048
Alpha_kinase: domain 1 of 1, from 4062 to 4075: score -0.1, E = 6.1
*->NLGeeGIekFfssH<-*
++G++GI+ F +H
gi|1538179 4062 DMGADGIKSFAETH 4075
Sigma54_DBD: domain 1 of 1, from 4134 to 4153: score 1.5, E = 7.4
CS XXXXXXXXXXXXXXXXXXXX
*->ksylkeklqeAkWLirsLeq<-*
+ + ++k++e+k L+++L+q
gi|1538179 4134 TIFSQDKQKEMKSLVENLKQ 4153
Tat: domain 1 of 1, from 4138 to 4157: score 2.0, E = 9.7
CS XXXXXXXXXXXX.XXXXXXX
*->edkeissedlltqlsgPlea<-*
+dk+++ + l + l+++l+a
gi|1538179 4138 QDKQKEMKSLVENLKQNLTA 4157
XLF: domain 1 of 1, from 4146 to 4176: score 3.0, E = 2.1
*->slalesqqvieeLidlLneKDaDDDFdDFQFFGiKreidkLqdkled
sl+ + +q + dlLn+K++ d+L ++++
gi|1538179 4146 SLVENLKQ--NLTADLLNMKEK--------------TFDFLRNSGHL 4176
<-*
gi|1538179 - -
HemolysinCabind: domain 2 of 7, from 4211 to 4228: score 8.6, E = 0.19
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG G+D+ y ++ +++
gi|1538179 4211 WGGRGDDVFYATGKSNIF 4228
PalH: domain 1 of 1, from 4215 to 4226: score 0.7, E = 3.8
*->GdDmlfvdptsn<-*
GdD++ ++++sn
gi|1538179 4215 GDDVFYATGKSN 4226
HemolysinCabind: domain 3 of 7, from 4229 to 4235: score 1.8, E = 22
CS E--SSS-
*->yGGaGnD<-*
+GG+GnD
gi|1538179 4229 TGGEGND 4235
HemolysinCabind: domain 4 of 7, from 4247 to 4254: score 4.0, E = 4.9
CS E--SSS-E
*->yGGaGnDt<-*
+GG+GnDt
gi|1538179 4247 FGGDGNDT 4254
Hep_Hag: domain 2 of 2, from 4294 to 4317: score 0.7, E = 50
CS ESTT-EE -STTEEEESTTTE
*->iGsnakA....sgensvAlGgnal<-*
+G+ ++++++++ ++sv +G+n++
gi|1538179 4294 SGNFNRVdtgdDQDYSVTIGNNNQ 4317
DUF1655: domain 1 of 1, from 4311 to 4322: score 1.8, E = 9.4
*->flgNgyQVEliea<-*
++gN QVEl a
gi|1538179 4311 TIGNNNQVEL-GA 4322
HemolysinCabind: domain 5 of 7, from 4334 to 4345: score 3.7, E = 5.8
CS -EEEEESSCGEE
*->DtLyGgaGnDtl<-*
++++ gaGnD+
gi|1538179 4334 NRINAGAGNDVV 4345
HemolysinCabind: domain 6 of 7, from 4353 to 4363: score 5.9, E = 1.3
CS EEEEESSCGEE
*->tLyGgaGnDtl<-*
+L+Gg+G+D l
gi|1538179 4353 VLNGGDGDDHL 4363
HemolysinCabind: domain 7 of 7, from 4375 to 4392: score 2.3, E = 16
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG+G+D + g+ +t+
gi|1538179 4375 NGGEGRDLMVLGGYQNTF 4392
Terminase_1: domain 1 of 1, from 4496 to 4510: score 1.1, E = 1.6
*->vALImAlgrAlyaee<-*
++ I+Al +A++++e
gi|1538179 4496 DSAIDALVQAMSGFE 4510
DUF2019: domain 1 of 1, from 4507 to 4523: score 4.6, E = 0.68
*->SkwfPQaGdAgmslrnLd<-*
S+++PQaGd g ++ L+
gi|1538179 4507 SGFEPQAGDNGF-IDSLE 4523
//