hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 153949079.fa
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Query sequence: gi|153949079|ref|YP_001399808.1|
Accession: [none]
Description: putative phage minor structural protein [Yersinia pseudotuberculosis IP 31758]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FG-GAP FG-GAP repeat 41.6 3.6e-11 4
HemolysinCabind Hemolysin-type calcium-binding repeat 27.8 2.9e-07 3
DUF885 Bacterial protein of unknown function 3.7 0.4 1
DUF1970 Domain of unknown function (DUF1970) 3.0 0.49 1
Glyco_hydro_26 Glycosyl hydrolase family 26 3.8 0.61 1
RecO Recombination protein O 3.6 0.84 1
SDH_beta Serine dehydratase beta chain 4.2 0.84 1
SH2 SH2 domain 3.9 0.9 1
zf-DBF DBF zinc finger 5.6 1 1
MAM1 Monopolin complex protein MAM1 3.1 1 1
Phage_Gp15 Bacteriophage Gp15 protein 1.9 1 1
CIA30 Complex I intermediate-associated pro 3.1 1.3 1
Gtr1_RagA Gtr1/RagA G protein conserved region 3.1 1.3 1
Orthopox_F7 Orthopoxvirus F7 protein 3.0 1.4 1
DUF1974 Domain of unknown function (DUF1974) 1.3 1.5 1
DUF1767 Domain of unknown function (DUF1767) 3.8 1.6 1
DUF1666 Protein of unknown function (DUF1666) 0.1 1.7 1
eIF-4B Plant specific eukaryotic initiation -1.7 1.9 1
PepSY_TM PepSY-associated TM helix 5.8 2 1
DUF1248 Protein of unknown function (DUF1248) 2.0 2.1 1
LNS2 LNS2 (Lipin/Ned1/Smp2) 2.3 2.3 1
DUF1814 Domain of unknown function (DUF1814) 2.0 2.3 1
DUF975 Protein of unknown function (DUF975) 1.9 2.3 1
ATP-synt ATP synthase 0.6 2.7 1
GPI Glucose-6-phosphate isomerase (GPI) 2.1 2.7 1
UBA_2 Ubiquitin associated domain (UBA) 2.9 2.8 1
DUF2072 Zn-ribbon containing protein (DUF2072 1.6 2.8 1
IpaC_SipC Salmonella-Shigella invasin protein C 1.1 2.9 1
UPF0149 Uncharacterised protein family (UPF01 2.3 3 1
DUF867 Protein of unknown function (DUF867) 2.2 3.1 1
DUF2002 Protein of unknown function (DUF2002) 1.9 3.1 1
T-box T-box 1.1 3.4 1
KNOX2 KNOX2 domain 3.5 3.6 1
PC_rep Proteasome/cyclosome repeat 3.6 3.7 1
Toprim_N DNA primase catalytic core, N-termina 2.7 3.8 1
Sas10_Utp3_C Sas10 C-terminal domain 3.5 3.9 1
Mtr2 Nuclear pore RNA shuttling protein Mt 1.2 4 1
Nitr_red_assoc Conserved nitrate reductase-associate 0.8 4 1
WaaY Lipopolysaccharide core biosynthesis 1.6 4.1 1
UPF0147 Uncharacterised protein family (UPF01 3.7 4.2 1
UbiD 3-octaprenyl-4-hydroxybenzoate carbox 0.2 4.5 1
Cas_Csm6 CRISPR-associated protein (Cas_Csm6) 0.6 4.5 1
TFIIF_beta Transcription initiation factor IIF, 0.4 4.6 1
Cation_ATPase_N Cation transporter/ATPase, N-terminus 2.7 4.7 1
Cro Cro 2.7 4.8 1
DUF1113 Protein of unknown function (DUF1113) 1.5 4.9 1
CUT CUT domain 2.6 4.9 1
Pox_A32 Poxvirus A32 protein 1.0 4.9 1
Ninjurin Ninjurin 1.1 5.1 1
Mad3_BUB1_II Mad3/BUB1 homology region 2 2.6 5.2 1
VHS VHS domain 2.0 5.3 1
DUF1997 Protein of unknown function (DUF1997) 1.4 5.3 1
VP9 VP9 protein 2.0 5.4 1
PSP1 PSP1 C-terminal conserved region 1.8 5.4 1
DUF2328 Uncharacterized protein conserved in 0.4 5.4 1
DUF2213 Uncharacterized protein conserved in 1.4 5.5 1
RasGAP_C RasGAP C-terminus 1.7 5.5 1
SMI1_KNR4 SMI1 / KNR4 family 1.8 5.6 1
Phage_sheath_1 Phage tail sheath protein -0.8 5.6 1
VDRIP Vitamin-D-receptor interacting protei -0.6 5.7 1
Shigella_OspC Shigella flexneri OspC protein -0.1 5.7 1
GntP_permease GntP family permease 0.3 5.8 1
Formyl_trans_C Formyl transferase, C-terminal domain 2.0 5.8 1
Cas_Cas2CT1978 CRISPR-associated protein (Cas_Cas2CT 1.7 6.3 1
Botulinum_HA-17 Clostridium botulinum HA-17 protein 0.6 6.4 1
Pox_TAP Viral Trans-Activator Protein 0.6 6.6 1
Gp49 Phage derived protein Gp49-like (DUF8 2.7 6.9 1
DUF464 Protein of unknown function (DUF464) 0.8 6.9 1
essB Predicted membrane protein essB 0.7 7 1
RNase_H2-Ydr279 Ydr279p protein family (RNase H2 comp -0.5 7 1
DUF1954 Domain of unknown function (DUF1954) 1.1 7 1
PP2A_B_N Serine-threonine phosphatase 2A subun 1.0 7.1 1
FlgD Flagellar hook capping protein 1.0 7.2 1
Chordopox_E11 Chordopoxvirus E11 protein 0.4 7.4 1
GnsAB GnsA/GnsB family 1.9 7.4 1
DUF1002 Protein of unknown function (DUF1002) 1.0 7.6 1
PagP Antimicrobial peptide resistance and 1.3 7.7 1
RYDR_ITPR RIH domain 0.5 7.8 1
Peptidase_S55 SpoIVB peptidase S55 0.8 7.9 1
TYW3 Methyltransferase TYW3 0.6 8 1
Queuosine_synth Queuosine biosynthesis protein 0.3 8 1
Crp Bacterial regulatory proteins, crp fa 2.8 8.2 1
Peptidase_U57 YabG peptidase U57 0.2 8.4 1
Mqo Malate:quinone oxidoreductase (Mqo) -0.6 8.5 1
UspB Universal stress protein B (UspB) 1.6 8.5 1
ATG11 Autophagy-related protein 11 0.4 8.8 1
U3_assoc_6 U3 small nucleolar RNA-associated pro 1.7 8.8 1
Taxilin Myosin-like coiled-coil protein -0.5 8.9 1
SPC25 Microsomal signal peptidase 25 kDa su 0.3 8.9 1
DUF2599 Protein of unknown function (DUF2599) 0.0 9 1
TmoB Toluene-4-monooxygenase system protei 0.8 9.1 1
DUF1322 Protein of unknown function (DUF1322) 1.2 9.1 1
STAG STAG domain 0.7 9.3 1
DED Death effector domain 1.5 9.4 1
DUF480 Protein of unknown function, DUF480 1.3 9.4 1
aPHC Alkaline phytoceramidase (aPHC) -0.6 9.4 1
SIS SIS domain 1.6 9.6 1
SARS_lipid_bind SARS lipid binding protein 0.7 9.6 1
HTS Homoserine O-succinyltransferase -1.6 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Mad3_BUB1_II 1/1 8 32 .. 72 99 .] 2.6 5.2
TYW3 1/1 31 46 .. 211 226 .] 0.6 8
VDRIP 1/1 31 46 .. 1 18 [. -0.6 5.7
Cas_Csm6 1/1 81 101 .. 393 413 .] 0.6 4.5
GPI 1/1 194 225 .. 156 190 .] 2.1 2.7
Crp 1/1 230 240 .. 23 33 .] 2.8 8.2
Taxilin 1/1 231 238 .. 309 316 .] -0.5 8.9
Botulinum_HA-17 1/1 272 280 .. 1 9 [. 0.6 6.4
DUF1997 1/1 283 298 .. 175 189 .] 1.4 5.3
HTS 1/1 314 328 .. 1 15 [. -1.6 9.7
RNase_H2-Ydr279 1/1 325 349 .. 32 68 .. -0.5 7
KNOX2 1/1 330 343 .. 43 56 .] 3.5 3.6
TFIIF_beta 1/1 343 354 .. 302 313 .] 0.4 4.6
MAM1 1/1 380 393 .. 400 413 .] 3.1 1
LNS2 1/1 439 452 .. 1 11 [. 2.3 2.3
Cro 1/1 457 467 .. 37 47 .. 2.7 4.8
DUF464 1/1 462 475 .. 1 14 [. 0.8 6.9
DUF975 1/1 462 476 .. 1 18 [. 1.9 2.3
VP9 1/1 495 506 .. 1 12 [. 2.0 5.4
WaaY 1/1 524 541 .. 1 18 [. 1.6 4.1
Queuosine_synth 1/1 528 537 .. 1 10 [. 0.3 8
SMI1_KNR4 1/1 544 584 .. 111 142 .] 1.8 5.6
Gtr1_RagA 1/1 555 583 .. 215 238 .] 3.1 1.3
Peptidase_S55 1/1 604 623 .. 109 128 .. 0.8 7.9
UbiD 1/1 663 675 .. 1 13 [. 0.2 4.5
zf-DBF 1/1 685 699 .. 35 49 .] 5.6 1
DED 1/1 706 719 .. 1 14 [. 1.5 9.4
DUF1970 1/1 708 726 .. 91 109 .. 3.0 0.49
essB 1/1 708 724 .. 348 364 .] 0.7 7
VHS 1/1 708 738 .. 120 153 .] 2.0 5.3
DUF1002 1/1 710 728 .. 230 248 .] 1.0 7.6
DUF1322 1/1 710 731 .. 1 22 [. 1.2 9.1
Phage_Gp15 1/1 719 733 .. 173 187 .] 1.9 1
UBA_2 1/1 723 734 .. 44 55 .. 2.9 2.8
SARS_lipid_bind 1/1 902 926 .. 73 97 .] 0.7 9.6
RasGAP_C 1/1 930 941 .. 138 149 .] 1.7 5.5
ATP-synt 1/1 961 971 .. 1 13 [. 0.6 2.7
Pox_TAP 1/1 963 981 .. 1 20 [. 0.6 6.6
SH2 1/1 970 978 .. 74 82 .] 3.9 0.9
Mqo 1/1 1025 1040 .. 211 227 .. -0.6 8.5
SPC25 1/1 1054 1070 .. 1 18 [. 0.3 8.9
Pox_A32 1/1 1109 1131 .. 196 220 .. 1.0 4.9
Cation_ATPase_N 1/1 1126 1151 .. 1 30 [. 2.7 4.7
PagP 1/1 1126 1140 .. 1 15 [. 1.3 7.7
T-box 1/1 1137 1146 .. 172 181 .. 1.1 3.4
Formyl_trans_C 1/1 1145 1155 .. 1 11 [. 2.0 5.8
Phage_sheath_1 1/1 1179 1194 .. 681 696 .] -0.8 5.6
DUF480 1/1 1182 1199 .. 117 134 .. 1.3 9.4
Sas10_Utp3_C 1/1 1233 1244 .. 67 78 .] 3.5 3.9
aPHC 1/1 1280 1287 .. 1 8 [. -0.6 9.4
DUF2213 1/1 1288 1298 .. 1 11 [. 1.4 5.5
STAG 1/1 1289 1312 .. 105 130 .] 0.7 9.3
ATG11 1/1 1304 1325 .. 1 22 [. 0.4 8.8
DUF1113 1/1 1311 1336 .. 225 252 .] 1.5 4.9
PP2A_B_N 1/1 1376 1395 .. 54 73 .] 1.0 7.1
Cas_Cas2CT1978 1/1 1380 1393 .. 77 90 .] 1.7 6.3
GnsAB 1/1 1466 1480 .. 1 15 [. 1.9 7.4
eIF-4B 1/1 1483 1492 .. 1 12 [. -1.7 1.9
DUF867 1/1 1581 1595 .. 1 15 [. 2.2 3.1
GntP_permease 1/1 1603 1623 .. 444 465 .] 0.3 5.8
PC_rep 1/1 1609 1619 .. 1 11 [. 3.6 3.7
DUF2328 1/1 1617 1639 .. 166 188 .] 0.4 5.4
PepSY_TM 1/1 1622 1645 .. 1 34 [] 5.8 2
UPF0147 1/1 1646 1658 .. 75 87 .] 3.7 4.2
Orthopox_F7 1/1 1686 1701 .. 67 82 .] 3.0 1.4
DUF1666 1/1 1693 1700 .. 1 8 [. 0.1 1.7
Nitr_red_assoc 1/1 1805 1815 .. 136 146 .] 0.8 4
FG-GAP 1/4 1820 1845 .. 1 36 [] 8.8 0.14
DUF1974 1/1 1897 1904 .. 281 288 .] 1.3 1.5
FG-GAP 2/4 1906 1936 .. 1 36 [] 9.4 0.096
TmoB 1/1 1908 1924 .. 1 19 [. 0.8 9.1
Gp49 1/1 1917 1929 .. 1 13 [. 2.7 6.9
FG-GAP 3/4 1976 2001 .. 5 36 .] 11.4 0.025
IpaC_SipC 1/1 1996 2031 .. 276 311 .. 1.1 2.9
FG-GAP 4/4 2030 2057 .. 1 36 [] 12.1 0.016
DUF2072 1/1 2065 2079 .. 137 151 .] 1.6 2.8
FlgD 1/1 2067 2093 .. 124 155 .] 1.0 7.2
SIS 1/1 2154 2167 .. 1 14 [. 1.6 9.6
HemolysinCabind 1/3 2192 2202 .. 8 18 .] 7.6 0.4
DUF1767 1/1 2212 2227 .. 90 106 .] 3.8 1.6
DUF2002 1/1 2260 2272 .. 104 116 .] 1.9 3.1
HemolysinCabind 2/3 2263 2280 .. 1 18 [] 14.9 0.0023
U3_assoc_6 1/1 2296 2311 .. 73 88 .] 1.7 8.8
Chordopox_E11 1/1 2322 2330 .. 1 9 [. 0.4 7.4
DUF1954 1/1 2337 2358 .. 10 32 .. 1.1 7
DUF1248 1/1 2341 2350 .. 1 10 [. 2.0 2.1
Ninjurin 1/1 2362 2380 .. 138 156 .. 1.1 5.1
Shigella_OspC 1/1 2367 2385 .. 1 20 [. -0.1 5.7
Mtr2 1/1 2439 2448 .. 1 10 [. 1.2 4
RYDR_ITPR 1/1 2547 2573 .. 198 229 .] 0.5 7.8
UspB 1/1 2574 2587 .. 60 73 .. 1.6 8.5
HemolysinCabind 3/3 2670 2679 .. 9 18 .] 5.3 1.9
SDH_beta 1/1 2680 2696 .. 143 159 .] 4.2 0.84
UPF0149 1/1 2768 2784 .. 1 19 [. 2.3 3
DUF885 1/1 2841 2853 .. 568 580 .] 3.7 0.4
DUF2599 1/1 2866 2873 .. 1 9 [. 0.0 9
CUT 1/1 2872 2886 .. 6 20 .. 2.6 4.9
Toprim_N 1/1 2889 2924 .. 47 81 .. 2.7 3.8
PSP1 1/1 2916 2929 .. 83 96 .] 1.8 5.4
CIA30 1/1 2958 2969 .. 199 210 .] 3.1 1.3
Peptidase_U57 1/1 2973 2984 .. 147 158 .. 0.2 8.4
RecO 1/1 2990 3023 .. 226 259 .] 3.6 0.84
DUF1814 1/1 2992 3070 .. 238 299 .] 2.0 2.3
Glyco_hydro_26 1/1 3045 3057 .. 347 359 .] 3.8 0.61
Alignments of top-scoring domains:
Mad3_BUB1_II: domain 1 of 1, from 8 to 32: score 2.6, E = 5.2
*->KSSlsRnvyKVSLGYkeqqnkvKRHtre<-*
K Sls +++ VS Y +++++ K e
gi|1539490 8 KLSLSQRLSIVSETYDRVNKNNK---KE 32
TYW3: domain 1 of 1, from 31 to 46: score 0.6, E = 8
*->keKLkRLedrleklkk<-*
keKLk +d +e +kk
gi|1539490 31 KEKLKYSYDDIEMIKK 46
VDRIP: domain 1 of 1, from 31 to 46: score -0.6, E = 5.7
*->STkerLLeslDDlElivK<-*
ke+L s DD+E+i K
gi|1539490 31 --KEKLKYSYDDIEMIKK 46
Cas_Csm6: domain 1 of 1, from 81 to 101: score 0.6, E = 4.5
*->leieeedyNyYdrkNkEiikl<-*
l i+ + +N Y+r N+ ii
gi|1539490 81 LAIDAAFFNDYERFNELIIYI 101
GPI: domain 1 of 1, from 194 to 225: score 2.1, E = 2.7
*->agsdYdtI.akagGmayyiiedGeqlrerknddypr<-*
a+s+Y t++a++gG y + dG r+n++ ++
gi|1539490 194 ASSFYATYsAERGGTVYLSSPDG----LRINNYFWN 225
Crp: domain 1 of 1, from 230 to 240: score 2.8, E = 8.2
*->lLtrLrekgLI<-*
+L L+++gLI
gi|1539490 230 VLRALQKQGLI 240
Taxilin: domain 1 of 1, from 231 to 238: score -0.5, E = 8.9
*->CRaLQaER<-*
+RaLQ+++
gi|1539490 231 LRALQKQG 238
Botulinum_HA-17: domain 1 of 1, from 272 to 280: score 0.6, E = 6.4
*->MsaERTFLP<-*
M+aE FLP
gi|1539490 272 MTAEYQFLP 280
DUF1997: domain 1 of 1, from 283 to 298: score 1.4, E = 5.3
*->ltrqLleD.Fhawiae<-*
l+++Ll D +++w +e
gi|1539490 283 LQEKLLVDiYQQWLDE 298
HTS: domain 1 of 1, from 314 to 328: score -1.6, E = 9.7
*->PIkIPddLPAveiLe<-*
+I I+++ P+ve+L+
gi|1539490 314 TIDIDRNAPEVELLR 328
RNase_H2-Ydr279: domain 1 of 1, from 325 to 349: score -0.5, E = 7
*->sptrylldsscpsdgqlyEltavkFskGcdyNraede<-*
++ ry+l + +gql+E+t++ +a++e
gi|1539490 325 ELLRYFL---SKIHGQLDEITEY---------KALKE 349
KNOX2: domain 1 of 1, from 330 to 343: score 3.5, E = 3.6
*->FLnkIEtQLqnLck<-*
FL+kI+ QL++++
gi|1539490 330 FLSKIHGQLDEITE 343
TFIIF_beta: domain 1 of 1, from 343 to 354: score 0.4, E = 4.6
*->EYkhykeEekke<-*
EYk +ke+e+
gi|1539490 343 EYKALKEAERIN 354
MAM1: domain 1 of 1, from 380 to 393: score 3.1, E = 1
*->sRKlfdEqllkrkk<-*
+RK++ E+ll++++
gi|1539490 380 ERKVILESLLQKES 393
LNS2: domain 1 of 1, from 439 to 452: score 2.3, E = 2.3
*->VViSD...IDGTIT<-*
V+iSD++ +DGT+T
gi|1539490 439 VIISDrslVDGTLT 452
Cro: domain 1 of 1, from 457 to 467: score 2.7, E = 4.8
CS TT-EEEEEEET
*->AGRkIeVtvke<-*
AGRkI+++v++
gi|1539490 457 AGRKIMIKVDT 467
DUF464: domain 1 of 1, from 462 to 475: score 0.8, E = 6.9
*->MIkvtfkrnndgkI<-*
MIkv+ rn+ ++I
gi|1539490 462 MIKVDTNRNQLKQI 475
DUF975: domain 1 of 1, from 462 to 476: score 1.9, E = 2.3
*->MeqNikvdysrsElKskA<-*
M ikvd +r +lK++A
gi|1539490 462 M---IKVDTNRNQLKQIA 476
VP9: domain 1 of 1, from 495 to 506: score 2.0, E = 5.4
*->LklrsgFllsGe<-*
L+l + F +sG+
gi|1539490 495 LQLIENFIMSGD 506
WaaY: domain 1 of 1, from 524 to 541: score 1.6, E = 4.1
*->MItekkikglsvFvkdNd<-*
MI + k ++ F k Nd
gi|1539490 524 MIEKVKLSEFDYFLKSND 541
Queuosine_synth: domain 1 of 1, from 528 to 537: score 0.3, E = 8
*->MklsdFDYeL<-*
kls+FDY L
gi|1539490 528 VKLSEFDYFL 537
SMI1_KNR4: domain 1 of 1, from 544 to 584: score 1.8, E = 5.6
*->lnkgeegqvivvfwdh.deivvv........AdSFeefLek<-*
++k+++g vi+++ d++d++ v+ +++++ + +S +f+e+
gi|1539490 544 IKKNDNGFVIYLISDPeDSRDVIinpnndynLNSIKDFIEN 584
Gtr1_RagA: domain 1 of 1, from 555 to 583: score 3.1, E = 1.3
*->vreDgneksgli.....lyNiknarkaie<-*
+++D++++ ++i +++++yN + + +ie
gi|1539490 555 LISDPEDSRDVIinpnnDYNLNSIKDFIE 583
Peptidase_S55: domain 1 of 1, from 604 to 623: score 0.8, E = 7.9
*->NKEFlvknisnkaipValrn<-*
NKE ++++ + +++ Va+r+
gi|1539490 604 NKECIFAHDEGETYQVAYRD 623
UbiD: domain 1 of 1, from 663 to 675: score 0.2, E = 4.5
*->idlLedeGeLirI<-*
+ lL+++++L++I
gi|1539490 663 LSLLKKHDRLVSI 675
zf-DBF: domain 1 of 1, from 685 to 699: score 5.6, E = 1
*->dnykalDdLiaqlaf<-*
+n+ ++D+L+ ++++
gi|1539490 685 ENFLDIDSLLKNSTH 699
DED: domain 1 of 1, from 706 to 719: score 1.5, E = 9.4
CS HHHHHHHHHCTSCH
*->yrvlLleisenLds<-*
yr+lL +is+++ +
gi|1539490 706 YRKLLNSISNDINK 719
DUF1970: domain 1 of 1, from 708 to 726: score 3.0, E = 0.49
*->KLtdsitsqLnnYAesLnD<-*
KL +si+ +n Y esLn+
gi|1539490 708 KLLNSISNDINKYMESLNE 726
essB: domain 1 of 1, from 708 to 724: score 0.7, E = 7
*->ekLdelekeldeYeker<-*
++L+++ ++++Y++++
gi|1539490 708 KLLNSISNDINKYMESL 724
VHS: domain 1 of 1, from 708 to 738: score 2.0, E = 5.3
CS HHHHHHHHH-.......TT-HHHHHHHHHHHHTT
*->eliqeWadafCKhdknkpdlkyisdvyklLKrkG<-*
+l+ + ++++ +k+ ++l+ i+d+y+lL+++
gi|1539490 708 KLLNSISNDI---NKYMESLNEIKDSYHLLPFDV 738
DUF1002: domain 1 of 1, from 710 to 728: score 1.0, E = 7.6
*->lnilnnDygafkkqLnslk<-*
ln ++nD++++ ++Ln +k
gi|1539490 710 LNSISNDINKYMESLNEIK 728
DUF1322: domain 1 of 1, from 710 to 731: score 1.2, E = 9.1
*->MsKRnRDiDKAiAsLaEiakkY<-*
++ Di K + sL+Ei+ Y
gi|1539490 710 LNSISNDINKYMESLNEIKDSY 731
Phage_Gp15: domain 1 of 1, from 719 to 733: score 1.9, E = 1
*->kYldsmrklqakYsL<-*
kY +s+ + ++ Y L
gi|1539490 719 KYMESLNEIKDSYHL 733
UBA_2: domain 1 of 1, from 723 to 734: score 2.9, E = 2.8
*->slNEIkDAYlLv<-*
slNEIkD Y L+
gi|1539490 723 SLNEIKDSYHLL 734
SARS_lipid_bind: domain 1 of 1, from 902 to 926: score 0.7, E = 9.6
*->PivvkmtKLAttEELPDEFvvvtaK<-*
Pi + tK+ E P E vv
gi|1539490 902 PILAYTTKVGVSVEYPGELVVFNSE 926
RasGAP_C: domain 1 of 1, from 930 to 941: score 1.7, E = 5.5
CS SSEEEESSS-TG
*->GVlleitgpqln<-*
GVl++i+++q+
gi|1539490 930 GVLKNIDDYQVL 941
ATP-synt: domain 1 of 1, from 961 to 971: score 0.6, E = 2.7
CS --HHHHHHHHHHH
*->AsLKeIrdRIkSV<-*
LK++r++IkS+
gi|1539490 961 --LKDVRNKIKSI 971
Pox_TAP: domain 1 of 1, from 963 to 981: score 0.6, E = 6.6
*->msvRiKiDKLRqivtYFsEF<-*
vR Ki + q+v Y+s +
gi|1539490 963 -DVRNKIKSIDQLVEYYSQY 981
SH2: domain 1 of 1, from 970 to 978: score 3.9, E = 0.9
CS SHHHHHHHH
*->sLpeLvehY<-*
s+ +Lve+Y
gi|1539490 970 SIDQLVEYY 978
Mqo: domain 1 of 1, from 1025 to 1040: score -0.6, E = 8.5
*->RnsDGtWtVtvkdlnng<-*
RnsD+ W+++v+++ +g
gi|1539490 1025 RNSDN-WQLVVANNATG 1040
SPC25: domain 1 of 1, from 1054 to 1070: score 0.3, E = 8.9
*->dkpVKviNkwDgpavKna<-*
VKv N wD pa+ n+
gi|1539490 1054 PDIVKV-NEWDLPAIANI 1070
Pox_A32: domain 1 of 1, from 1109 to 1131: score 1.0, E = 4.9
*->svmraarekSkrkvyCIIeDsVfae<-*
++++++ + ++++ II D+ +ae
gi|1539490 1109 IIIQLDVDN-NYRAF-IIDDNIHAE 1131
Cation_ATPase_N: domain 1 of 1, from 1126 to 1151: score 2.7, E = 4.7
CS SSS---SHHHCCSS-CCCCHHHTTT-SS--
*->eelkkevdldahkltvEevleklktdpeeG<-*
++ e +h+++ e++ klk pe+G
gi|1539490 1126 DNIHAE----WHEISHNELVTKLKIQPENG 1151
PagP: domain 1 of 1, from 1126 to 1140: score 1.3, E = 7.7
CS HHHHHHHHS-SEEEE
*->qnisqTWtepehqdL<-*
ni+ W+e h +L
gi|1539490 1126 DNIHAEWHEISHNEL 1140
T-box: domain 1 of 1, from 1137 to 1146: score 1.1, E = 3.4
*->QNeeITkLKI<-*
+Ne +TkLKI
gi|1539490 1137 HNELVTKLKI 1146
Formyl_trans_C: domain 1 of 1, from 1145 to 1155: score 2.0, E = 5.8
*->kitkedgrIDW<-*
ki +e g+I W
gi|1539490 1145 KIQPENGKIRW 1155
Phage_sheath_1: domain 1 of 1, from 1179 to 1194: score -0.8, E = 5.6
*->EyitFrfviTstylvd<-*
E +t r+ ++s+yl++
gi|1539490 1179 EQLTARLHQFSDYLQT 1194
DUF480: domain 1 of 1, from 1182 to 1199: score 1.3, E = 9.4
*->seRlhrFaDvaeVEavLe<-*
++Rlh+F+D ++E++ +
gi|1539490 1182 TARLHQFSDYLQTEHQIN 1199
Sas10_Utp3_C: domain 1 of 1, from 1233 to 1244: score 3.5, E = 3.9
*->GIkknvvKSvKl<-*
GI++nv+ S+K
gi|1539490 1233 GIRTNVSASTKA 1244
aPHC: domain 1 of 1, from 1280 to 1287: score -0.6, E = 9.4
*->pgrwgeqt<-*
++rwge+t
gi|1539490 1280 WNRWGEIT 1287
DUF2213: domain 1 of 1, from 1288 to 1298: score 1.4, E = 5.5
*->stRsitadGfL<-*
++R+++++G+L
gi|1539490 1288 TERKKDINGRL 1298
STAG: domain 1 of 1, from 1289 to 1312: score 0.7, E = 9.3
*->EkkKsrdnraneRvdsLnskLgirke<-*
E+kK ++r +dsL+ kL i+ +
gi|1539490 1289 ERKKDINGR-LNNIDSLLDKL-ITRQ 1312
ATG11: domain 1 of 1, from 1304 to 1325: score 0.4, E = 8.8
*->fedaVikrfkDvetLakkLqKe<-*
+ d+ i+r +v++L+kk+q++
gi|1539490 1304 LLDKLITRQLSVNQLNKKQQRK 1325
DUF1113: domain 1 of 1, from 1311 to 1336: score 1.5, E = 4.9
*->kelllfllnfnqrRllknsFpklkyslk<-*
++l+ ++ln+ q+R l+++Fp l k
gi|1539490 1311 RQLSVNQLNKKQQRKLAEIFPQLT--DK 1336
PP2A_B_N: domain 1 of 1, from 1376 to 1395: score 1.0, E = 7.1
*->LWKvsekk.lkkvesnfnlnr<-*
LW+v+++ ++ ++ +++ l++
gi|1539490 1376 LWRVTDRWrITEA-DGNTLQD 1395
Cas_Cas2CT1978: domain 1 of 1, from 1380 to 1393: score 1.7, E = 6.3
*->dnrrepVDfDGllL<-*
++r+++ ++DG +L
gi|1539490 1380 TDRWRITEADGNTL 1393
GnsAB: domain 1 of 1, from 1466 to 1480: score 1.9, E = 7.4
*->MniEelkkkaEeeIa<-*
M+ +l++k EeeI+
gi|1539490 1466 MSNGDLTEKQEEEIQ 1480
eIF-4B: domain 1 of 1, from 1483 to 1492: score -1.7, E = 1.9
*->MsKpWGGiGiGA<-*
++ +WGGi GA
gi|1539490 1483 LAMAWGGI--GA 1492
DUF867: domain 1 of 1, from 1581 to 1595: score 2.2, E = 3.1
*->YssFeELkenetegk<-*
Y+ F+ L+ ++++++
gi|1539490 1581 YHAFSQLATETDPHV 1595
GntP_permease: domain 1 of 1, from 1603 to 1623: score 0.3, E = 5.8
*->TvleTIlSvvGLifvLiLlsLv<-*
+v +TI++++GL++ + + +++
gi|1539490 1603 GVFSTINATIGLGVAF-AMAMG 1623
PC_rep: domain 1 of 1, from 1609 to 1619: score 3.6, E = 3.7
*->gAilaLGliha<-*
+A+++LG+++a
gi|1539490 1609 NATIGLGVAFA 1619
DUF2328: domain 1 of 1, from 1617 to 1639: score 0.4, E = 5.4
*->lLAreaGgtisveiteeavvlsa<-*
+ A ++Ggt + +++++++ l++
gi|1539490 1617 AFAMAMGGTAATAAGPAGIALAF 1639
PepSY_TM: domain 1 of 1, from 1622 to 1645: score 5.8, E = 2
*->lgdlHrgrfggvallglllglllllllltGlvlw<-*
+g+ ++ ++g+++++l++t+++++
gi|1539490 1622 MGG----------TAATAAGPAGIALAFTMIIVG 1645
UPF0147: domain 1 of 1, from 1646 to 1658: score 3.7, E = 4.2
*->dIWeiiSeLErik<-*
dI++ +S+ Eri+
gi|1539490 1646 DIYSAVSQIERIR 1658
Orthopox_F7: domain 1 of 1, from 1686 to 1701: score 3.0, E = 1.4
*->LDiKRRYRHaiEsvYF<-*
LD + RY ++EsvY
gi|1539490 1686 LDNQIRYNQTLESVYQ 1701
DUF1666: domain 1 of 1, from 1693 to 1700: score 0.1, E = 1.7
*->yqDLEtVY<-*
+q+LE+VY
gi|1539490 1693 NQTLESVY 1700
Nitr_red_assoc: domain 1 of 1, from 1805 to 1815: score 0.8, E = 4
*->NhNFlpAlqEF<-*
N+N+ A++E+
gi|1539490 1805 NKNLHQAFAEL 1815
FG-GAP: domain 1 of 4, from 1820 to 1845: score 8.8, E = 0.14
CS CCSCEEEC -TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaag.DlnGDGrpDlvvgaPgadggt.dgsvyll<-*
++s+ + D++++G++D++v +++ +
gi|1539490 1820 TYSPFILSaDVDRNGLNDFIV-------INeK-----Y 1845
DUF1974: domain 1 of 1, from 1897 to 1904: score 1.3, E = 1.5
*->dvIqVDDF<-*
++I VD+F
gi|1539490 1897 HAIEVDEF 1904
FG-GAP: domain 2 of 4, from 1906 to 1936: score 9.4, E = 0.096
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+ +++gD+nGD +lv+ +++d+ ++y++
gi|1539490 1906 EVVFPVLGDFNGDNVFELVI-------FHdDkMTTYHY 1936
TmoB: domain 1 of 1, from 1908 to 1924: score 0.8, E = 9.1
CS --EEEEEEEETT-SBEEEE
*->MAlFPiisnFegDFVlQLV<-*
FP+ + F gD V LV
gi|1539490 1908 --VFPVLGDFNGDNVFELV 1924
Gp49: domain 1 of 1, from 1917 to 1929: score 2.7, E = 6.9
*->GeGvfELRidygp<-*
G+ vfEL i +++
gi|1539490 1917 GDNVFELVIFHDD 1929
FG-GAP: domain 3 of 4, from 1976 to 2001: score 11.4, E = 0.025
CS EEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->vaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
+++gD+n+DG++D+++ +++g +l
gi|1539490 1976 SLVGDINNDGFDDVLL-------LNkSGDMLHL 2001
IpaC_SipC: domain 1 of 1, from 1996 to 2031: score 1.1, E = 2.9
*->GDkisikasNkklsaeHkavLsqrvesledkidlhq<-*
GD + + N+ ++Hk+ Ls+++ sl + + lh+
gi|1539490 1996 GDMLHLMGNNSGVFRQHKTKLSSELTSLLSSSNLHR 2031
FG-GAP: domain 4 of 4, from 2030 to 2057: score 12.1, E = 0.016
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
+ s++ ++Dln DG Dlv+ + +d + ++
gi|1539490 2030 HRSQLQLTDLNKDGGLDLVI-------ILnD--GNYY 2057
DUF2072: domain 1 of 1, from 2065 to 2079: score 1.6, E = 2.8
*->EGtYviDLpSalkkk<-*
+G Y+ D pS+++k
gi|1539490 2065 DGEYHFDTPSMVNKI 2079
FlgD: domain 1 of 1, from 2067 to 2093: score 1.0, E = 7.2
*->evgLpsaAdevtvtikDaaGqvvnvelVrtid<-*
e+ ++ ++ ++tik+++G+ Vr +
gi|1539490 2067 EYHFDTPSMVNKITIKNEGGDS-----VRYQQ 2093
SIS: domain 1 of 1, from 2154 to 2167: score 1.6, E = 9.6
CS HHHHSEEEEEE-CH
*->klakakrIyliGaG<-*
++k+k+I++iG+G
gi|1539490 2154 GYHKKKNIFTIGSG 2167
HemolysinCabind: domain 1 of 3, from 2192 to 2202: score 7.6, E = 0.4
CS EEEEESSCGEE
*->tLyGgaGnDtl<-*
+L+Gg+GnDt
gi|1539490 2192 ILSGGEGNDTV 2202
DUF1767: domain 1 of 1, from 2212 to 2227: score 3.8, E = 1.6
*->vnsirDIsqPlynqlLs<-*
++si+DIs +y+q+ +
gi|1539490 2212 IDSIIDISKGYYSQV-N 2227
DUF2002: domain 1 of 1, from 2260 to 2272: score 1.9, E = 3.1
*->ryLnrlFGDEKtd<-*
+yLn++ GD+K
gi|1539490 2260 NYLNGMGGDDKIW 2272
HemolysinCabind: domain 2 of 3, from 2263 to 2280: score 14.9, E = 0.0023
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G +G+D + G++GnD+l
gi|1539490 2263 NGMGGDDKIWGNGGNDLL 2280
U3_assoc_6: domain 1 of 1, from 2296 to 2311: score 1.7, E = 8.8
*->kkfknsisdysiqrrI<-*
+++ +s+++ s+q rI
gi|1539490 2296 YHILKSTHEKSLQIRI 2311
Chordopox_E11: domain 1 of 1, from 2322 to 2330: score 0.4, E = 7.4
*->MELvNIFLE<-*
M + NIFLE
gi|1539490 2322 MQVSNIFLE 2330
DUF1954: domain 1 of 1, from 2337 to 2358: score 1.1, E = 7
*->pSfElkNvtGykiykkygknfln<-*
+S+El N++ ++ +k+++ f++
gi|1539490 2337 TSIELDNIDVLI-NIKNDNGFMT 2358
DUF1248: domain 1 of 1, from 2341 to 2350: score 2.0, E = 2.1
*->rddVDvviNP<-*
+d++Dv+iN+
gi|1539490 2341 LDNIDVLINI 2350
Ninjurin: domain 1 of 1, from 2362 to 2380: score 1.1, E = 5.1
*->figrLnlnrvedqrrlnrl<-*
+ g +n+n++++q ln++
gi|1539490 2362 LVGVYNINNNQKQQVLNFT 2380
Shigella_OspC: domain 1 of 1, from 2367 to 2385: score -0.1, E = 5.7
*->vEisnHqkklPLnkkHHtvD<-*
i n qk+ Ln + tvD
gi|1539490 2367 -NINNNQKQQVLNFTIQTVD 2385
Mtr2: domain 1 of 1, from 2439 to 2448: score 1.2, E = 4
CS EECCTT....
*->ngqtQqQVTH<-*
ng +QqQVTH
gi|1539490 2439 NGYQQQQVTH 2448
RYDR_ITPR: domain 1 of 1, from 2547 to 2573: score 0.5, E = 7.8
CS XXXXXXXXXXX.....XXXXXXXXXXXXXXXX
*->lickevlnpGesVEENaDlLiqtnlraseasl<-*
l+c +v++++ DlL+++++ ++
gi|1539490 2547 LLC-DVIVERS----DDDLLLRYRDQPEKHQS 2573
UspB: domain 1 of 1, from 2574 to 2587: score 1.6, E = 8.5
*->vRLfhYIksqeYlh<-*
+RL++Y + ++Y h
gi|1539490 2574 IRLVNYMNDERYRH 2587
HemolysinCabind: domain 3 of 3, from 2670 to 2679: score 5.3, E = 1.9
CS EEEESSCGEE
*->LyGgaGnDtl<-*
L Gg+G+Dt+
gi|1539490 2670 LKGGGGDDTY 2679
SDH_beta: domain 1 of 1, from 2680 to 2696: score 4.2, E = 0.84
*->YySiGGGfIvdeehfGl<-*
YyS G G+I + +++Gl
gi|1539490 2680 YYSAGSGAINIADTSGL 2696
UPF0149: domain 1 of 1, from 2768 to 2784: score 2.3, E = 3
CS ---HHHHHHHHHHTT-S--
*->lpaYsalsqeLkqaGlgvs<-*
+Y l q+Lk++Gl+++
gi|1539490 2768 --EYYQLCQQLKSMGLSLT 2784
DUF885: domain 1 of 1, from 2841 to 2853: score 3.7, E = 0.4
*->PLdvLEqkvdrwI<-*
PL++ Eqk+d+++
gi|1539490 2841 PLPLIEQKIDAFF 2853
DUF2599: domain 1 of 1, from 2866 to 2873: score 0.0, E = 9
*->IdhatWaqw<-*
+h+tW+q+
gi|1539490 2866 -EHVTWIQR 2873
CUT: domain 1 of 1, from 2872 to 2886: score 2.6, E = 4.9
CS XXX---SHHHHHHHH
*->mneeldTaeIarrVk<-*
+ ee dT++Ia++Vk
gi|1539490 2872 QREEFDTVDIAKWVK 2886
Toprim_N: domain 1 of 1, from 2889 to 2924: score 2.7, E = 3.8
CS HHHHHT-HHHHHTTT-EE-SST..T--EET TTTEE
*->fLkkkgfdeelLleaGLlsknenggkfyDr.FrnRi<-*
+L++++ + lL+++GLl+++ +k D++F+nRi
gi|1539490 2889 HLRSQNEINYLLEQLGLLKESPLSDKALDFtFKNRI 2924
PSP1: domain 1 of 1, from 2916 to 2929: score 1.8, E = 5.4
*->LakvfktRIELRQI<-*
L ++fk RI L+Q
gi|1539490 2916 LDFTFKNRIDLAQA 2929
CIA30: domain 1 of 1, from 2958 to 2969: score 3.1, E = 1.3
*->GpFeLeidsIka<-*
G+FeL+i I++
gi|1539490 2958 GHFELLISNIQV 2969
Peptidase_U57: domain 1 of 1, from 2973 to 2984: score 0.2, E = 8.4
*->vGvhvsEkEqPE<-*
+Gv+vsE EqP+
gi|1539490 2973 YGVVVSESEQPL 2984
RecO: domain 1 of 1, from 2990 to 3023: score 3.6, E = 0.84
*->akLkplldskleesslvERlyelsrsflprrelL<-*
+ L +++ +k +++ v Rl e + sf++ +lL
gi|1539490 2990 IDLRQYFNQKNLTKDHVGRLAEHDMSFDELTLLL 3023
DUF1814: domain 1 of 1, from 2992 to 3070: score 2.0, E = 2.3
*->ikrtflerllalhkflfysrkdedfdgil.aeaa.gllllapwlefl
++ f +++l++++ +++++d fd+ + ++ + ++a+++++
gi|1539490 2992 LRQYFNQKNLTKDHVGRLAEHDMSFDELTlLLDKnIPIEQAFTQRLQ 3038
kei.la..............ltedyeeflesl<-*
++++++ ++++ ++++ + +d++ ++e +
gi|1539490 3039 TQLgPLklfndervlnqgdiFDQDISQLAEAM 3070
Glyco_hydro_26: domain 1 of 1, from 3045 to 3057: score 3.8, E = 0.61
CS H..........ST
*->alynsswVlnkDE<-*
+l+n+++Vln +
gi|1539490 3045 KLFNDERVLNQGD 3057
//