hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 156392480.fa
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Query sequence: gi|156392480|ref|XP_001636076.1|
Accession: [none]
Description: predicted protein [Nematostella vectensis]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RhoGEF RhoGEF domain 36.1 2.5e-10 2
F-box F-box domain 28.9 3e-07 1
PH PH domain 13.0 0.0047 1
FAD_syn FAD synthetase 11.0 0.019 1
PTPA Phosphotyrosyl phosphate activator (P 5.5 0.23 1
HrpB4 Bacterial type III secretion protein 1.7 1.1 1
Complex1_24kDa Respiratory-chain NADH dehydrogenase 4.0 1.2 2
HypD Hydrogenase formation hypA family 3.2 1.3 1
PNP_UDP_1 Phosphorylase superfamily 3.7 1.3 1
7TM_GPCR_Sri Serpentine type 7TM GPCR chemorecepto 2.5 1.4 1
zf-Dof Dof domain, zinc finger 3.8 1.6 1
Pyr_redox_2 Pyridine nucleotide-disulphide oxidor 2.5 1.7 2
ANATO Anaphylotoxin-like domain 0.5 2.7 1
Nucleoplasmin Nucleoplasmin 2.0 2.8 1
Cg6151-P Uncharacterized conserved protein CG6 0.0 3.4 1
PemK PemK-like protein 3.1 3.6 2
Hep_core_N Hepatitis core protein, putative zinc 2.3 3.8 1
DUF370 Domain of unknown function (DUF370) 2.4 4.1 1
DUF965 Bacterial protein of unknown function 1.6 4.3 1
DUF1444 Protein of unknown function (DUF1444) 0.9 4.6 1
DHC Dihaem cytochrome c 1.5 5.1 1
Fil_haemagg Haemagluttinin repeat 2.6 5.2 1
2CSK_N Two-component sensor kinase N-termina 1.6 5.6 1
Tfb2 Transcription factor Tfb2 -2.6 5.7 1
TAT_ubiq Aminotransferase ubiquitination site 2.0 5.9 1
Transglut_prok Microbial transglutaminase -1.9 6.2 1
DUF2149 Uncharacterized conserved protein (DU 2.1 6.3 1
DUF1196 Protein of unknown function (DUF1196) 2.5 6.4 1
Trp_repressor Trp repressor protein 2.2 6.4 1
Cas_TM1802 CRISPR-associated protein TM1802 (cas -0.7 6.5 1
DRY_EERY Alternative splicing regulator 1.9 6.6 2
DUF2319 Predicted membrane protein (DUF2319) -0.6 6.7 1
Androgen_recep Androgen receptor -1.4 7.7 1
DUF2044 Conserved membrane protein (DUF2044) -1.9 8 1
Sporozoite_P67 Sporozoite P67 surface antigen -3.0 8.1 1
SNARE SNARE domain 2.6 8.2 1
Nic96 Nup93/Nic96 -0.3 8.4 1
RsbU_N Phosphoserine phosphatase RsbU, N-ter 1.7 8.9 1
MerR-DNA-bind MerR, DNA binding 2.3 9 2
Birna_VP2 Birnavirus VP2 protein -1.3 9.1 1
RBDV_coat Raspberry bushy dwarf virus coat prot -1.1 9.4 1
YdjC YdjC-like protein 0.0 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TAT_ubiq 1/1 3 20 .. 37 55 .] 2.0 5.9
Fil_haemagg 1/1 20 31 .. 64 75 .] 2.6 5.2
F-box 1/1 137 184 .. 1 46 [] 28.9 3e-07
Androgen_recep 1/1 158 181 .. 437 460 .] -1.4 7.7
Cg6151-P 1/1 165 173 .. 1 9 [. 0.0 3.4
PTPA 1/1 185 198 .. 338 352 .] 5.5 0.23
HrpB4 1/1 276 301 .. 1 30 [. 1.7 1.1
DUF2044 1/1 296 306 .. 609 619 .] -1.9 8
DUF2319 1/1 315 332 .. 556 574 .] -0.6 6.7
zf-Dof 1/1 320 333 .. 50 63 .] 3.8 1.6
FAD_syn 1/1 333 358 .. 138 162 .] 11.0 0.019
DUF965 1/1 340 363 .. 1 23 [. 1.6 4.3
Transglut_prok 1/1 373 381 .. 406 414 .] -1.9 6.2
ANATO 1/1 391 407 .. 12 31 .. 0.5 2.7
Birna_VP2 1/1 422 430 .. 445 453 .] -1.3 9.1
DRY_EERY 1/2 473 482 .. 146 155 .] 0.9 12
PemK 1/2 481 495 .. 100 114 .] 1.5 9.5
Complex1_24kDa 1/2 482 491 .. 152 161 .] 2.0 4.2
MerR-DNA-bind 1/2 487 499 .. 1 13 [. 1.1 19
Pyr_redox_2 1/2 505 515 .. 275 285 .] 1.3 3.8
DUF1196 1/1 543 555 .. 39 51 .] 2.5 6.4
Tfb2 1/1 622 635 .. 1 14 [. -2.6 5.7
DHC 1/1 623 629 .. 1 7 [. 1.5 5.1
RsbU_N 1/1 655 663 .. 74 82 .] 1.7 8.9
DUF2149 1/1 667 674 .. 1 8 [. 2.1 6.3
Sporozoite_P67 1/1 670 688 .. 638 656 .. -3.0 8.1
Nic96 1/1 671 725 .. 1 76 [. -0.3 8.4
Cas_TM1802 1/1 673 711 .. 670 711 .. -0.7 6.5
Nucleoplasmin 1/1 713 758 .. 235 282 .] 2.0 2.8
PNP_UDP_1 1/1 725 761 .. 236 277 .] 3.7 1.3
RBDV_coat 1/1 741 753 .. 262 274 .] -1.1 9.4
2CSK_N 1/1 750 760 .. 143 153 .] 1.6 5.6
RhoGEF 1/2 755 803 .. 1 49 [. 13.6 0.0011
DUF1444 1/1 811 828 .. 1 20 [. 0.9 4.6
DUF370 1/1 828 843 .. 55 70 .. 2.4 4.1
DRY_EERY 2/2 843 852 .. 146 155 .] 0.9 12
PemK 2/2 851 865 .. 100 114 .] 1.5 9.5
Complex1_24kDa 2/2 852 861 .. 152 161 .] 2.0 4.2
MerR-DNA-bind 2/2 857 869 .. 1 13 [. 1.1 19
Pyr_redox_2 2/2 875 885 .. 275 285 .] 1.3 3.8
RhoGEF 2/2 918 995 .. 122 207 .] 22.4 2.7e-06
Trp_repressor 1/1 920 934 .. 74 88 .] 2.2 6.4
7TM_GPCR_Sri 1/1 923 932 .. 300 309 .] 2.5 1.4
YdjC 1/1 924 933 .. 277 286 .] 0.0 9.8
HypD 1/1 975 997 .. 1 30 [. 3.2 1.3
SNARE 1/1 1001 1015 .. 1 15 [. 2.6 8.2
Hep_core_N 1/1 1059 1069 .. 1 11 [. 2.3 3.8
PH 1/1 1061 1161 .. 23 92 .] 13.0 0.0047
Alignments of top-scoring domains:
TAT_ubiq: domain 1 of 1, from 3 to 20: score 2.0, E = 5.9
*->VnigGrssvpgkiKsrKaR<-*
Vn + s+ k+Ks K R
gi|1563924 3 VNLNSSSAFS-KKKSSKSR 20
Fil_haemagg: domain 1 of 1, from 20 to 31: score 2.6, E = 5.2
CS EEEESS-EEEEE
*->tltaaGdLdnsg<-*
++t++Gd+ n++
gi|1563924 20 RITSKGDINNNS 31
F-box: domain 1 of 1, from 137 to 184: score 28.9, E = 3e-07
CS -HHHHS-HHHHHHHHTTS-HHHHHHHTTT-HHHHHHHCT- HHH HH
*->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
+ LP + + I+s+Ldp++l r+++VS++w+ l+ +++w +k+
gi|1563924 137 DFTTVLPRFISMYIFSFLDPRSLSRAAMVSWHWKFLCEQDeIWMpKC 183
CS H
l<-*
gi|1563924 184 Q 184
Androgen_recep: domain 1 of 1, from 158 to 181: score -1.4, E = 7.7
CS XXXXXXXXXXXXXXXXXXXXXXXX
*->sPsAaAsssWHtLFtAEEGqLYGP<-*
s s aA sWH F E ++ P
gi|1563924 158 SLSRAAMVSWHWKFLCEQDEIWMP 181
Cg6151-P: domain 1 of 1, from 165 to 173: score 0.0, E = 3.4
*->mpWwlryLc<-*
+ W+ ++Lc
gi|1563924 165 VSWHWKFLC 173
PTPA: domain 1 of 1, from 185 to 198: score 5.5, E = 0.23
*->yFGteLmpfepvvsg<-*
+FG +++p p+v++
gi|1563924 185 RFG-WFLPYKPDVNK 198
HrpB4: domain 1 of 1, from 276 to 301: score 1.7, E = 1.1
*->ddarhdnvAFGLArrLqrYqanlrgLadwl<-*
+++ +d++ ++L++Y+ n +++ d+l
gi|1563924 276 PKDLDDAR----KALLDGYDPNHSTALDSL 301
DUF2044: domain 1 of 1, from 296 to 306: score -1.9, E = 8
*->keLEreRkeRl<-*
++L+ +R++Rl
gi|1563924 296 TALDSLRRKRL 306
DUF2319: domain 1 of 1, from 315 to 332: score -0.6, E = 6.7
*->gsdlqiPeGWtpedterlr<-*
+s + P+G + +ter+r
gi|1563924 315 RSQTA-PVGGSTRKTERAR 332
zf-Dof: domain 1 of 1, from 320 to 333: score 3.8, E = 1.6
*->PvGggrRknkksss<-*
PvGg++Rk ++++s
gi|1563924 320 PVGGSTRKTERARS 333
FAD_syn: domain 1 of 1, from 333 to 358: score 11.0, E = 0.019
*->gaklGFeVtvvppvt.ldgekISSTr<-*
+a GF+V++++ + +d+e+ SSTr
gi|1563924 333 SASAGFSVEETQRFDlDDKEPLSSTR 358
DUF965: domain 1 of 1, from 340 to 363: score 1.6, E = 4.3
*->ldkTmkFkfdkek.ekdvkeiLkt<-*
++T++F++d++++ +++ +L++
gi|1563924 340 VEETQRFDLDDKEpLSSTRMTLSE 363
Transglut_prok: domain 1 of 1, from 373 to 381: score -1.9, E = 6.2
*->PakvkqGWP<-*
P v+q WP
gi|1563924 373 PSVVEQAWP 381
ANATO: domain 1 of 1, from 391 to 407: score 0.5, E = 2.7
CS TCCHHHHHTS-..SS-HHHH
*->grtCeeRaaridktdgkeCv<-*
+r+C ++ +++ dg++Cv
gi|1563924 391 SRSCRSNVKLG---DGERCV 407
Birna_VP2: domain 1 of 1, from 422 to 430: score -1.3, E = 9.1
*->fkDllrgIR<-*
+kDl rgI
gi|1563924 422 WKDLTRGIH 430
DRY_EERY: domain 1 of 2, from 473 to 482: score 0.9, E = 12
*->avGFsYgdse<-*
a+++ Y++++
gi|1563924 473 AIPYEYESTT 482
PemK: domain 1 of 2, from 481 to 495: score 1.5, E = 9.5
CS HHHHHHHHHHHCCCT
*->aemnevdeaLrvald<-*
+++++++e+L+++ld
gi|1563924 481 TTLEALLERLKLVLD 495
Complex1_24kDa: domain 1 of 2, from 482 to 491: score 2.0, E = 4.2
*->kieeLLdrlk<-*
++e+LL+rlk
gi|1563924 482 TLEALLERLK 491
MerR-DNA-bind: domain 1 of 2, from 487 to 499: score 1.1, E = 19
CS HHHHHHHHHHHHT
*->leRLaFIrrarrL<-*
leRL++++ +r++
gi|1563924 487 LERLKLVLDGREA 499
Pyr_redox_2: domain 1 of 2, from 505 to 515: score 1.3, E = 3.8
CS EECGGGGCESS
RF xxxxxxxxxxx
*->yAaGDvaeggp<-*
+A+GD+ ++++
gi|1563924 505 FAVGDCGTIRL 515
DUF1196: domain 1 of 1, from 543 to 555: score 2.5, E = 6.4
*->iHKtKmLHvDiFR<-*
+HK + HvDiF
gi|1563924 543 VHKSRGGHVDIFI 555
Tfb2: domain 1 of 1, from 622 to 635: score -2.6, E = 5.7
*->dFLetipspvlqRL<-*
d+Le+ s v+++L
gi|1563924 622 DYLEECSSLVRDKL 635
DHC: domain 1 of 1, from 623 to 629: score 1.5, E = 5.1
*->YleeCgs<-*
YleeC+s
gi|1563924 623 YLEECSS 629
RsbU_N: domain 1 of 1, from 655 to 663: score 1.7, E = 8.9
*->vmvGYGLAY<-*
v +++GL+Y
gi|1563924 655 VFKFFGLSY 663
DUF2149: domain 1 of 1, from 667 to 674: score 2.1, E = 6.3
*->msgVANLf<-*
+sgVANL+
gi|1563924 667 LSGVANLI 674
Sporozoite_P67: domain 1 of 1, from 670 to 688: score -3.0, E = 8.1
*->iANDfVEItekLkKnnkdh<-*
+AN VE t+kL+K++ ++
gi|1563924 670 VANLIVEATNKLRKETTEY 688
Nic96: domain 1 of 1, from 671 to 725: score -0.3, E = 8.4
*->apnLvelfaslseesfepnrfnndrqlsdewqilqamtdegpvsndk
a+++ve+ +l +e+ +++ qi++++ ++++
gi|1563924 671 ANLIVEATNKLRKETT------EYGKNELLEQIIEQLQAAKEGR--- 708
qkqlLeawrssdaiklrkqspkymlvegs<-*
+ + k+rk++++ +e+s
gi|1563924 709 ----------ASPKKSRKTTQE--SLEQS 725
Cas_TM1802: domain 1 of 1, from 673 to 711: score -0.7, E = 6.5
*->llnevinKLeeYkvsikkyneelfsemkellleeinnWkLsk<-*
l+ e++nKL+++ +++++el ++++e l ++++ ++s+
gi|1563924 673 LIVEATNKLRKET--TEYGKNELLEQIIEQL-QAAKEGRASP 711
Nucleoplasmin: domain 1 of 1, from 713 to 758: score 2.0, E = 2.8
CS ....SSS....S ....XXXXXXXXXXXXX......XXXXXXXXXXX
*->kkrkvtkksded.dedDDdEDEeeeEdapikDEEeeeeAaegakkks
k rk t+ s e +ded d +ee+ p++ ++ A+e + + +
gi|1563924 713 KSRKTTQESLEQsDEDESDGNDEEKHKFPVG---TGKSAGERRTALA 756
CS XX
nk<-*
++
gi|1563924 757 QE 758
PNP_UDP_1: domain 1 of 1, from 725 to 761: score 3.7, E = 1.3
CS .E.....E-GGGTT--...------HHHHHHHHHHHHH HHHH
*->sDlaagdgadeelthelRReeveefleeaaeraaalal.alla<-*
sD++ + ++++e h + +++ a er +al ++++l+
gi|1563924 725 SDEDES-DGNDEEKH----KFPVGTGKSAGERRTAL-AqEILS 761
RBDV_coat: domain 1 of 1, from 741 to 753: score -1.1, E = 9.4
*->PvGtGKsstivLt<-*
PvGtGKs+ t
gi|1563924 741 PVGTGKSAGERRT 753
2CSK_N: domain 1 of 1, from 750 to 760: score 1.6, E = 5.6
*->eaRqalAaeil<-*
e R alA+eil
gi|1563924 750 ERRTALAQEIL 760
RhoGEF: domain 1 of 2, from 755 to 803: score 13.6, E = 0.0011
*->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
++ E+l +E Y ++L il v+ pL++a +s +++++ i+++F
gi|1563924 755 LAQEILSSEVSYMQTLNILKEVFKTPLQAALASNRAIISLPNINALF 801
sN<-*
++
gi|1563924 802 AD 803
DUF1444: domain 1 of 1, from 811 to 828: score 0.9, E = 4.6
*->MtsrkmrdkLkkrLqhpewt<-*
sr m d+L krL++ +w+
gi|1563924 811 --SRVMVDELSKRLANNNWD 828
DUF370: domain 1 of 1, from 828 to 843: score 2.4, E = 4.1
*->DSnHvILSalqpETIa<-*
DS +v LS++ ET+a
gi|1563924 828 DSHQVLLSSVLFETVA 843
DRY_EERY: domain 2 of 2, from 843 to 852: score 0.9, E = 12
*->avGFsYgdse<-*
a+++ Y++++
gi|1563924 843 AIPYEYESTT 852
PemK: domain 2 of 2, from 851 to 865: score 1.5, E = 9.5
CS HHHHHHHHHHHCCCT
*->aemnevdeaLrvald<-*
+++++++e+L+++ld
gi|1563924 851 TTLEALLERLKLVLD 865
Complex1_24kDa: domain 2 of 2, from 852 to 861: score 2.0, E = 4.2
*->kieeLLdrlk<-*
++e+LL+rlk
gi|1563924 852 TLEALLERLK 861
MerR-DNA-bind: domain 2 of 2, from 857 to 869: score 1.1, E = 19
CS HHHHHHHHHHHHT
*->leRLaFIrrarrL<-*
leRL++++ +r++
gi|1563924 857 LERLKLVLDGREA 869
Pyr_redox_2: domain 2 of 2, from 875 to 885: score 1.3, E = 3.8
CS EECGGGGCESS
RF xxxxxxxxxxx
*->yAaGDvaeggp<-*
+A+GD+ ++++
gi|1563924 875 FAVGDCGTIRL 885
RhoGEF: domain 2 of 2, from 918 to 995: score 22.4, E = 2.7e-06
*->rqaasnpqFaefldeveassntgAkddavkltLqsLLlkPvqRilrY
r++++npqF+ fl + e+ +nt +L L l+P R+ Y
gi|1563924 918 RCKEQNPQFRAFLRRHENQPNTK------MQSLAELFLEPGKRLKSY 958
pLLLkeLLkhtpegedssesedLkkaldalqdlaksiNe<-*
+ LL++LL +tp+ d+ ++ + +a++ +qd+a + +
gi|1563924 959 IDLLQKLLRYTPA--DHVDRRNVTQAIARIQDIADIFKQ 995
Trp_repressor: domain 1 of 1, from 920 to 934: score 2.2, E = 6.4
*->kygsdgykavLerll<-*
k +++++a+L+r++
gi|1563924 920 KEQNPQFRAFLRRHE 934
7TM_GPCR_Sri: domain 1 of 1, from 923 to 932: score 2.5, E = 1.4
*->tPpYRkfllr<-*
+P++R fl+r
gi|1563924 923 NPQFRAFLRR 932
YdjC: domain 1 of 1, from 924 to 933: score 0.0, E = 9.8
*->pevkaaLaen<-*
p+++a+L+++
gi|1563924 924 PQFRAFLRRH 933
HypD: domain 1 of 1, from 975 to 997: score 3.2, E = 1.3
*->DkalaPvkrliekIkelAekigaTAErpvk<-*
D++ + ++i++I+ +A+++ ++++
gi|1563924 975 DRRNV--TQAIARIQDIADIF-----KQYN 997
SNARE: domain 1 of 1, from 1001 to 1015: score 2.6, E = 8.2
CS HHHHHHHHHHHHHHH
*->eRdeeleelessige<-*
+R++ l+el+++i +
gi|1563924 1001 DRERSLQELQKTILN 1015
Hep_core_N: domain 1 of 1, from 1059 to 1069: score 2.3, E = 3.8
*->mqLFHLCLvis<-*
m+LF CLv +
gi|1563924 1059 MYLFNDCLVAA 1069
PH: domain 1 of 1, from 1061 to 1161: score 13.0, E = 0.0047
CS EETTEEEEEESTT SSEEEEEEGGCEEEEEECST
*->LfddvLlyykdkk............skpkgsipLsgiqvtkvedn..
Lf+d+L+ k + + ++ ++++k + +++L++++v v+d+++
gi|1563924 1061 LFNDCLVAAVLKYnfvpfkrlvrrsYKFQACVSLKKLKVQNVVDTkh 1107
CS TSTTEEEEEE TSEEEEEECSSHHHHHHHHHHH
.................krknvFeirt.dretlllqaeseeerkeWikai
+++ ++++ + + + kn+F+++++ r +l qa+s +++ +Wi+ +
gi|1563924 1108 kpellrpkryvgaylefDLKNAFVLVSsKR-MWLCQASSWDQKIRWITVL 1156
CS HHHHH
qsair<-*
++ i
gi|1563924 1157 ENTIV 1161
//